Wall clock time and date at job start Sat Apr 11 2020 06:05:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81397 * 1 3 3 C 1.81395 * 103.00330 * 2 1 4 4 C 1.50703 * 109.47392 * 180.02562 * 3 2 1 5 5 O 1.21278 * 119.99799 * 0.02562 * 4 3 2 6 6 N 1.34774 * 120.00082 * 180.02562 * 4 3 2 7 7 C 1.46928 * 120.60249 * 179.97438 * 6 4 3 8 8 C 1.53261 * 108.73992 * 234.12339 * 7 6 4 9 9 C 1.52506 * 109.42409 * 306.20327 * 8 7 6 10 10 C 1.54205 * 109.96499 * 181.76745 * 9 8 7 11 11 C 1.54574 * 101.66346 * 143.24632 * 10 9 8 12 12 N 1.46817 * 105.48870 * 334.96213 * 11 10 9 13 13 C 1.46500 * 124.36211 * 196.90174 * 12 11 10 14 14 C 1.53006 * 109.46998 * 89.99797 * 13 12 11 15 15 C 1.50699 * 109.46866 * 180.02562 * 14 13 12 16 16 H 1.08003 * 119.99962 * 359.97438 * 15 14 13 17 17 C 1.37874 * 120.00270 * 180.02562 * 15 14 13 18 18 N 1.31522 * 119.99834 * 359.97438 * 17 15 14 19 19 Si 1.86793 * 120.00496 * 180.02562 * 17 15 14 20 20 H 1.48494 * 109.47325 * 59.99531 * 19 17 15 21 21 H 1.48496 * 109.47425 * 179.97438 * 19 17 15 22 22 H 1.48505 * 109.47183 * 299.99726 * 19 17 15 23 23 C 1.34565 * 111.27675 * 17.16565 * 12 11 10 24 24 O 1.21284 * 125.02159 * 179.08718 * 23 12 11 25 25 C 1.52504 * 110.83248 * 59.97195 * 9 8 7 26 26 C 1.46934 * 120.60214 * 359.97438 * 6 4 3 27 27 H 1.08999 * 109.47315 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.47029 * 300.00201 * 1 2 3 29 29 H 1.09001 * 109.47335 * 59.99618 * 1 2 3 30 30 H 1.08997 * 109.46930 * 59.99956 * 3 2 1 31 31 H 1.09000 * 109.46920 * 300.00347 * 3 2 1 32 32 H 1.09006 * 109.58961 * 114.34538 * 7 6 4 33 33 H 1.08994 * 109.71316 * 353.97537 * 7 6 4 34 34 H 1.08996 * 109.48490 * 186.22247 * 8 7 6 35 35 H 1.09003 * 109.47919 * 66.18458 * 8 7 6 36 36 H 1.08994 * 110.99011 * 25.15122 * 10 9 8 37 37 H 1.09006 * 110.98845 * 261.33498 * 10 9 8 38 38 H 1.09001 * 110.24224 * 215.96439 * 11 10 9 39 39 H 1.08997 * 110.32066 * 94.00455 * 11 10 9 40 40 H 1.09000 * 109.47175 * 329.99929 * 13 12 11 41 41 H 1.09001 * 109.47297 * 209.99436 * 13 12 11 42 42 H 1.08993 * 109.46955 * 300.00226 * 14 13 12 43 43 H 1.09000 * 109.47050 * 60.00054 * 14 13 12 44 44 H 0.96992 * 120.00032 * 180.02562 * 18 17 15 45 45 H 1.09002 * 109.48485 * 60.00324 * 25 9 8 46 46 H 1.09002 * 109.48254 * 180.02562 * 25 9 8 47 47 H 1.09006 * 109.59295 * 245.64313 * 26 6 4 48 48 H 1.09001 * 109.59524 * 5.94262 * 26 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2221 1.7674 0.0000 4 6 3.7196 1.9373 -0.0006 5 8 4.4404 0.9620 -0.0015 6 7 4.2576 3.1729 -0.0002 7 6 5.7157 3.3538 -0.0003 8 6 6.0997 4.2581 1.1760 9 6 5.2929 5.5504 1.1067 10 6 5.7016 6.4888 2.2602 11 6 5.6225 7.8741 1.5790 12 7 5.8158 7.6181 0.1463 13 6 6.1681 8.6454 -0.8370 14 6 7.6910 8.7473 -0.9447 15 6 8.0533 9.8044 -1.9558 16 1 7.2753 10.3488 -2.4704 17 6 9.3780 10.0760 -2.2247 18 7 10.3255 9.4128 -1.5984 19 14 9.8273 11.3868 -3.4773 20 1 9.2734 12.6951 -3.0452 21 1 11.3052 11.4857 -3.5820 22 1 9.2602 11.0221 -4.8005 23 6 5.6221 6.3195 -0.1482 24 8 5.7025 5.8381 -1.2585 25 6 3.7973 5.2605 1.1764 26 6 3.3967 4.3637 0.0003 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3633 0.5139 0.8900 29 1 -0.3634 0.5139 -0.8899 30 1 1.8032 2.2370 0.8900 31 1 1.8032 2.2370 -0.8900 32 1 6.0262 3.8193 -0.9358 33 1 6.2062 2.3864 0.1070 34 1 7.1633 4.4905 1.1238 35 1 5.8851 3.7455 2.1138 36 1 6.7166 6.2760 2.5956 37 1 4.9959 6.4200 3.0881 38 1 6.4115 8.5251 1.9555 39 1 4.6461 8.3262 1.7529 40 1 5.7611 9.6058 -0.5208 41 1 5.7524 8.3765 -1.8081 42 1 8.1066 9.0161 0.0263 43 1 8.0979 7.7869 -1.2609 44 1 11.2574 9.6041 -1.7872 45 1 3.5685 4.7539 2.1140 46 1 3.2426 6.1974 1.1248 47 1 3.5257 4.9084 -0.9351 48 1 2.3548 4.0614 0.1066 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001269218695.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:05:00 Heat of formation + Delta-G solvation = -69.218490 kcal Electronic energy + Delta-G solvation = -28261.438394 eV Core-core repulsion = 24442.394373 eV Total energy + Delta-G solvation = -3819.044021 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.28064 -39.64002 -36.90772 -36.16729 -34.26353 -32.92439 -31.83303 -30.69878 -29.96306 -29.06505 -28.45152 -26.02820 -24.93707 -23.64794 -22.56546 -21.86440 -20.67381 -19.66526 -18.30685 -17.48652 -16.80338 -16.68861 -16.09183 -15.83338 -15.71392 -15.42611 -14.91630 -14.51645 -14.43198 -14.24473 -14.08024 -13.95789 -13.77923 -13.43552 -13.37629 -12.98576 -12.75143 -12.71988 -12.63732 -12.39963 -12.28952 -12.21893 -11.94329 -11.63996 -11.39679 -11.30051 -10.95563 -10.80422 -10.73037 -10.57131 -10.26020 -10.04058 -10.00115 -9.91575 -9.40871 -9.18058 -8.59651 -8.41053 -8.08999 -7.95362 -6.06230 -4.10156 1.15453 2.21806 2.41624 2.86146 2.91570 3.29945 3.34581 3.36086 3.48144 4.14918 4.21172 4.37157 4.41975 4.45015 4.61797 4.75376 4.77336 4.77817 4.83731 4.87982 4.91244 5.13893 5.22360 5.29552 5.29875 5.32841 5.41607 5.44571 5.58469 5.65995 5.73167 5.82339 5.83290 5.87335 5.98663 6.01661 6.20653 6.38798 6.40208 6.74586 6.92314 7.22339 7.44511 7.61441 7.78925 7.92660 7.97099 8.28627 8.59645 8.96212 9.54168 11.05029 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.021840 B = 0.002301 C = 0.002238 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1281.740311 B =12165.490602 C =12510.893771 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 S -0.186 6.186 3 C -0.126 4.126 4 C 0.530 3.470 5 O -0.524 6.524 6 N -0.597 5.597 7 C 0.103 3.897 8 C -0.109 4.109 9 C -0.095 4.095 10 C -0.125 4.125 11 C 0.100 3.900 12 N -0.609 5.609 13 C 0.127 3.873 14 C 0.013 3.987 15 C -0.524 4.524 16 H 0.056 0.944 17 C 0.059 3.941 18 N -0.892 5.892 19 Si 0.895 3.105 20 H -0.276 1.276 21 H -0.287 1.287 22 H -0.276 1.276 23 C 0.522 3.478 24 O -0.525 6.525 25 C -0.110 4.110 26 C 0.102 3.898 27 H 0.104 0.896 28 H 0.075 0.925 29 H 0.076 0.924 30 H 0.109 0.891 31 H 0.109 0.891 32 H 0.099 0.901 33 H 0.091 0.909 34 H 0.082 0.918 35 H 0.073 0.927 36 H 0.085 0.915 37 H 0.087 0.913 38 H 0.081 0.919 39 H 0.066 0.934 40 H 0.065 0.935 41 H 0.070 0.930 42 H 0.016 0.984 43 H 0.020 0.980 44 H 0.262 0.738 45 H 0.078 0.922 46 H 0.081 0.919 47 H 0.084 0.916 48 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.244 -11.417 10.694 25.584 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.311 4.311 2 S 0.038 5.962 3 C -0.277 4.277 4 C 0.316 3.684 5 O -0.400 6.400 6 N -0.331 5.331 7 C -0.019 4.019 8 C -0.148 4.148 9 C -0.098 4.098 10 C -0.163 4.163 11 C -0.023 4.023 12 N -0.341 5.341 13 C 0.007 3.993 14 C -0.025 4.025 15 C -0.563 4.563 16 H 0.074 0.926 17 C -0.143 4.143 18 N -0.531 5.531 19 Si 0.723 3.277 20 H -0.202 1.202 21 H -0.212 1.212 22 H -0.201 1.201 23 C 0.308 3.692 24 O -0.402 6.402 25 C -0.149 4.149 26 C -0.021 4.021 27 H 0.122 0.878 28 H 0.095 0.905 29 H 0.095 0.905 30 H 0.127 0.873 31 H 0.127 0.873 32 H 0.117 0.883 33 H 0.109 0.891 34 H 0.101 0.899 35 H 0.092 0.908 36 H 0.104 0.896 37 H 0.105 0.895 38 H 0.099 0.901 39 H 0.084 0.916 40 H 0.083 0.917 41 H 0.089 0.911 42 H 0.035 0.965 43 H 0.039 0.961 44 H 0.072 0.928 45 H 0.096 0.904 46 H 0.099 0.901 47 H 0.102 0.898 48 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -18.920 -12.985 10.052 25.052 hybrid contribution -0.522 2.164 -0.551 2.294 sum -19.442 -10.820 9.501 24.194 Atomic orbital electron populations 1.23536 0.95985 1.06726 1.04846 1.87564 1.04390 1.06253 1.97994 1.23573 0.98169 0.99093 1.06864 1.19578 0.88721 0.83182 0.76919 1.90738 1.61890 1.37986 1.49401 1.47907 1.07691 1.04832 1.72651 1.21906 0.78695 1.00813 1.00461 1.21717 1.00201 0.93690 0.99151 1.21035 0.96826 0.96345 0.95621 1.22708 1.03244 0.93570 0.96733 1.22050 1.01677 0.97382 0.81210 1.48596 1.67815 1.09010 1.08724 1.21813 0.99877 0.87804 0.89761 1.19386 0.88228 0.97620 0.97230 1.21033 0.91965 1.20148 1.23139 0.92562 1.25004 0.96546 0.96440 0.96278 1.69958 0.99975 1.41075 1.42062 0.86606 0.77280 0.81932 0.81884 1.20198 1.21239 1.20129 1.20367 0.76592 0.82767 0.89476 1.90652 1.52352 1.72239 1.24917 1.21727 0.93791 1.00257 0.99121 1.21848 0.93675 0.86510 1.00058 0.87775 0.90546 0.90486 0.87314 0.87255 0.88295 0.89097 0.89918 0.90831 0.89640 0.89450 0.90063 0.91626 0.91675 0.91113 0.96524 0.96123 0.92830 0.90363 0.90093 0.89788 0.90002 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.83 10.76 101.05 1.09 0.26 16 2 S -0.19 -1.92 21.52 -107.50 -2.31 -4.24 16 3 C -0.13 -1.12 4.77 36.01 0.17 -0.95 16 4 C 0.53 6.75 7.72 -10.99 -0.08 6.67 16 5 O -0.52 -8.72 15.28 5.56 0.08 -8.64 16 6 N -0.60 -7.19 2.96 -172.69 -0.51 -7.70 16 7 C 0.10 1.41 6.00 -3.67 -0.02 1.39 16 8 C -0.11 -1.29 4.80 -26.85 -0.13 -1.42 16 9 C -0.09 -1.09 0.55 -155.48 -0.09 -1.18 16 10 C -0.12 -1.21 6.20 -25.27 -0.16 -1.37 16 11 C 0.10 1.20 7.35 -3.04 -0.02 1.18 16 12 N -0.61 -10.08 2.94 -172.46 -0.51 -10.59 16 13 C 0.13 2.56 5.88 -4.04 -0.02 2.53 16 14 C 0.01 0.34 5.30 -27.88 -0.15 0.19 16 15 C -0.52 -14.57 9.11 -34.44 -0.31 -14.88 16 16 H 0.06 1.50 7.74 -52.48 -0.41 1.09 16 17 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16 18 N -0.89 -26.68 13.29 55.43 0.74 -25.94 16 19 Si 0.90 21.47 29.54 -169.99 -5.02 16.45 16 20 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 21 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 22 H -0.28 -6.55 7.11 56.52 0.40 -6.14 16 23 C 0.52 8.56 6.24 -11.02 -0.07 8.49 16 24 O -0.52 -10.48 13.72 5.55 0.08 -10.41 16 25 C -0.11 -0.97 4.77 -26.86 -0.13 -1.09 16 26 C 0.10 0.99 5.93 -3.68 -0.02 0.97 16 27 H 0.10 0.52 8.14 -51.92 -0.42 0.09 16 28 H 0.08 0.35 8.14 -51.92 -0.42 -0.07 16 29 H 0.08 0.38 8.14 -51.92 -0.42 -0.05 16 30 H 0.11 0.69 7.70 -51.93 -0.40 0.29 16 31 H 0.11 0.79 7.93 -51.92 -0.41 0.38 16 32 H 0.10 1.63 5.87 -51.93 -0.30 1.32 16 33 H 0.09 1.30 7.01 -51.93 -0.36 0.94 16 34 H 0.08 1.05 8.13 -51.93 -0.42 0.63 16 35 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 36 H 0.08 0.85 7.88 -51.93 -0.41 0.44 16 37 H 0.09 0.59 7.87 -51.93 -0.41 0.19 16 38 H 0.08 1.01 8.14 -51.93 -0.42 0.59 16 39 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 40 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 41 H 0.07 1.50 7.92 -51.93 -0.41 1.09 16 42 H 0.02 0.44 8.14 -51.93 -0.42 0.01 16 43 H 0.02 0.59 8.14 -51.93 -0.42 0.17 16 44 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 45 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 46 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 47 H 0.08 1.01 6.82 -51.93 -0.35 0.65 16 48 H 0.08 0.53 5.92 -51.93 -0.31 0.22 16 LS Contribution 390.05 15.07 5.88 5.88 Total: -1.00 -35.11 390.05 -9.60 -44.71 By element: Atomic # 1 Polarization: 6.09 SS G_CDS: -7.98 Total: -1.90 kcal Atomic # 6 Polarization: 2.41 SS G_CDS: -0.04 Total: 2.37 kcal Atomic # 7 Polarization: -43.95 SS G_CDS: -0.28 Total: -44.23 kcal Atomic # 8 Polarization: -19.20 SS G_CDS: 0.16 Total: -19.04 kcal Atomic # 14 Polarization: 21.47 SS G_CDS: -5.02 Total: 16.45 kcal Atomic # 16 Polarization: -1.92 SS G_CDS: -2.31 Total: -4.24 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -35.11 -9.60 -44.71 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001269218695.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.508 kcal (2) G-P(sol) polarization free energy of solvation -35.106 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.614 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.605 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.711 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.218 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds