Wall clock time and date at job start Sat Apr 11 2020 06:04:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81397 * 1 3 3 C 1.81395 * 103.00330 * 2 1 4 4 C 1.50703 * 109.47392 * 180.02562 * 3 2 1 5 5 O 1.21278 * 119.99799 * 0.02562 * 4 3 2 6 6 N 1.34774 * 120.00082 * 180.02562 * 4 3 2 7 7 C 1.46928 * 120.60249 * 179.97438 * 6 4 3 8 8 C 1.53261 * 108.73992 * 234.12339 * 7 6 4 9 9 C 1.52506 * 109.42409 * 306.20327 * 8 7 6 10 10 C 1.54205 * 109.96499 * 181.76745 * 9 8 7 11 11 C 1.54574 * 101.66346 * 143.24632 * 10 9 8 12 12 N 1.46817 * 105.48870 * 334.96213 * 11 10 9 13 13 C 1.46500 * 124.36211 * 196.90174 * 12 11 10 14 14 C 1.53006 * 109.46998 * 89.99797 * 13 12 11 15 15 C 1.50699 * 109.46866 * 180.02562 * 14 13 12 16 16 H 1.08003 * 119.99962 * 359.97438 * 15 14 13 17 17 C 1.37874 * 120.00270 * 180.02562 * 15 14 13 18 18 N 1.31522 * 119.99834 * 359.97438 * 17 15 14 19 19 Si 1.86793 * 120.00496 * 180.02562 * 17 15 14 20 20 H 1.48494 * 109.47325 * 59.99531 * 19 17 15 21 21 H 1.48496 * 109.47425 * 179.97438 * 19 17 15 22 22 H 1.48505 * 109.47183 * 299.99726 * 19 17 15 23 23 C 1.34565 * 111.27675 * 17.16565 * 12 11 10 24 24 O 1.21284 * 125.02159 * 179.08718 * 23 12 11 25 25 C 1.52504 * 110.83248 * 59.97195 * 9 8 7 26 26 C 1.46934 * 120.60214 * 359.97438 * 6 4 3 27 27 H 1.08999 * 109.47315 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.47029 * 300.00201 * 1 2 3 29 29 H 1.09001 * 109.47335 * 59.99618 * 1 2 3 30 30 H 1.08997 * 109.46930 * 59.99956 * 3 2 1 31 31 H 1.09000 * 109.46920 * 300.00347 * 3 2 1 32 32 H 1.09006 * 109.58961 * 114.34538 * 7 6 4 33 33 H 1.08994 * 109.71316 * 353.97537 * 7 6 4 34 34 H 1.08996 * 109.48490 * 186.22247 * 8 7 6 35 35 H 1.09003 * 109.47919 * 66.18458 * 8 7 6 36 36 H 1.08994 * 110.99011 * 25.15122 * 10 9 8 37 37 H 1.09006 * 110.98845 * 261.33498 * 10 9 8 38 38 H 1.09001 * 110.24224 * 215.96439 * 11 10 9 39 39 H 1.08997 * 110.32066 * 94.00455 * 11 10 9 40 40 H 1.09000 * 109.47175 * 329.99929 * 13 12 11 41 41 H 1.09001 * 109.47297 * 209.99436 * 13 12 11 42 42 H 1.08993 * 109.46955 * 300.00226 * 14 13 12 43 43 H 1.09000 * 109.47050 * 60.00054 * 14 13 12 44 44 H 0.96992 * 120.00032 * 180.02562 * 18 17 15 45 45 H 1.09002 * 109.48485 * 60.00324 * 25 9 8 46 46 H 1.09002 * 109.48254 * 180.02562 * 25 9 8 47 47 H 1.09006 * 109.59295 * 245.64313 * 26 6 4 48 48 H 1.09001 * 109.59524 * 5.94262 * 26 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2221 1.7674 0.0000 4 6 3.7196 1.9373 -0.0006 5 8 4.4404 0.9620 -0.0015 6 7 4.2576 3.1729 -0.0002 7 6 5.7157 3.3538 -0.0003 8 6 6.0997 4.2581 1.1760 9 6 5.2929 5.5504 1.1067 10 6 5.7016 6.4888 2.2602 11 6 5.6225 7.8741 1.5790 12 7 5.8158 7.6181 0.1463 13 6 6.1681 8.6454 -0.8370 14 6 7.6910 8.7473 -0.9447 15 6 8.0533 9.8044 -1.9558 16 1 7.2753 10.3488 -2.4704 17 6 9.3780 10.0760 -2.2247 18 7 10.3255 9.4128 -1.5984 19 14 9.8273 11.3868 -3.4773 20 1 9.2734 12.6951 -3.0452 21 1 11.3052 11.4857 -3.5820 22 1 9.2602 11.0221 -4.8005 23 6 5.6221 6.3195 -0.1482 24 8 5.7025 5.8381 -1.2585 25 6 3.7973 5.2605 1.1764 26 6 3.3967 4.3637 0.0003 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3633 0.5139 0.8900 29 1 -0.3634 0.5139 -0.8899 30 1 1.8032 2.2370 0.8900 31 1 1.8032 2.2370 -0.8900 32 1 6.0262 3.8193 -0.9358 33 1 6.2062 2.3864 0.1070 34 1 7.1633 4.4905 1.1238 35 1 5.8851 3.7455 2.1138 36 1 6.7166 6.2760 2.5956 37 1 4.9959 6.4200 3.0881 38 1 6.4115 8.5251 1.9555 39 1 4.6461 8.3262 1.7529 40 1 5.7611 9.6058 -0.5208 41 1 5.7524 8.3765 -1.8081 42 1 8.1066 9.0161 0.0263 43 1 8.0979 7.7869 -1.2609 44 1 11.2574 9.6041 -1.7872 45 1 3.5685 4.7539 2.1140 46 1 3.2426 6.1974 1.1248 47 1 3.5257 4.9084 -0.9351 48 1 2.3548 4.0614 0.1066 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001269218695.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:04:59 Heat of formation + Delta-G solvation = -92.179113 kcal Electronic energy + Delta-G solvation = -28262.434041 eV Core-core repulsion = 24442.394373 eV Total energy + Delta-G solvation = -3820.039668 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -42.34046 -40.69753 -38.01391 -37.48078 -35.83794 -34.56592 -32.89634 -31.98657 -30.88969 -29.83526 -29.44575 -27.26281 -26.55636 -24.49142 -23.89718 -23.17299 -21.92681 -20.75590 -19.47068 -18.69020 -18.39755 -17.63975 -17.25040 -17.03028 -16.76766 -16.54338 -16.35766 -16.04741 -15.34903 -15.14615 -14.99056 -14.72111 -14.62470 -14.54357 -14.41771 -14.19821 -14.16907 -13.98304 -13.51077 -13.44557 -13.41213 -13.20509 -13.06204 -12.95422 -12.82869 -12.60381 -12.39025 -12.24537 -11.94139 -11.86201 -11.62337 -11.49549 -11.43819 -11.04054 -10.85994 -10.62035 -10.49937 -9.64109 -9.50269 -8.70170 -8.25257 -6.38170 0.49771 1.37593 1.41560 1.47730 1.49097 1.64751 1.66001 1.95847 2.20220 2.40804 3.08202 3.25482 3.33208 3.49577 3.63130 3.94106 3.99911 4.03383 4.04260 4.19242 4.29661 4.34356 4.38251 4.40396 4.40986 4.48193 4.53865 4.61104 4.62455 4.75040 4.75637 4.82524 4.89153 4.94994 4.95679 5.01292 5.05018 5.19474 5.22011 5.33937 5.44011 5.46290 5.60863 5.83402 6.14272 6.31077 6.38007 6.77728 7.02470 7.29453 7.32578 8.86442 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.021840 B = 0.002301 C = 0.002238 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1281.740311 B =12165.490602 C =12510.893771 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 S -0.273 6.273 3 C -0.106 4.106 4 C 0.523 3.477 5 O -0.573 6.573 6 N -0.595 5.595 7 C 0.105 3.895 8 C -0.103 4.103 9 C -0.086 4.086 10 C -0.112 4.112 11 C 0.093 3.907 12 N -0.620 5.620 13 C 0.143 3.857 14 C 0.025 3.975 15 C -0.545 4.545 16 H 0.067 0.933 17 C -0.001 4.001 18 N -0.933 5.933 19 Si 0.969 3.031 20 H -0.258 1.258 21 H -0.284 1.284 22 H -0.270 1.270 23 C 0.507 3.493 24 O -0.573 6.573 25 C -0.105 4.105 26 C 0.097 3.903 27 H 0.110 0.890 28 H 0.095 0.905 29 H 0.089 0.911 30 H 0.146 0.854 31 H 0.130 0.870 32 H 0.061 0.939 33 H 0.074 0.926 34 H 0.063 0.937 35 H 0.101 0.899 36 H 0.078 0.922 37 H 0.136 0.864 38 H 0.071 0.929 39 H 0.103 0.897 40 H 0.090 0.910 41 H 0.052 0.948 42 H -0.001 1.001 43 H -0.029 1.029 44 H 0.264 0.736 45 H 0.114 0.886 46 H 0.102 0.898 47 H 0.054 0.946 48 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.858 -9.914 12.744 28.808 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.288 4.288 2 S -0.049 6.049 3 C -0.256 4.256 4 C 0.311 3.689 5 O -0.453 6.453 6 N -0.327 5.327 7 C -0.018 4.018 8 C -0.142 4.142 9 C -0.089 4.089 10 C -0.150 4.150 11 C -0.029 4.029 12 N -0.351 5.351 13 C 0.022 3.978 14 C -0.013 4.013 15 C -0.583 4.583 16 H 0.085 0.915 17 C -0.199 4.199 18 N -0.573 5.573 19 Si 0.793 3.207 20 H -0.183 1.183 21 H -0.210 1.210 22 H -0.195 1.195 23 C 0.296 3.704 24 O -0.453 6.453 25 C -0.143 4.143 26 C -0.025 4.025 27 H 0.129 0.871 28 H 0.114 0.886 29 H 0.108 0.892 30 H 0.164 0.836 31 H 0.148 0.852 32 H 0.079 0.921 33 H 0.093 0.907 34 H 0.081 0.919 35 H 0.120 0.880 36 H 0.097 0.903 37 H 0.154 0.846 38 H 0.090 0.910 39 H 0.121 0.879 40 H 0.108 0.892 41 H 0.071 0.929 42 H 0.017 0.983 43 H -0.011 1.011 44 H 0.073 0.927 45 H 0.132 0.868 46 H 0.120 0.880 47 H 0.072 0.928 48 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -22.577 -11.449 12.140 28.074 hybrid contribution 0.624 1.655 -1.236 2.158 sum -21.952 -9.794 10.905 26.396 Atomic orbital electron populations 1.23549 0.91139 1.07701 1.06396 1.87904 1.09769 1.08920 1.98269 1.23502 0.94845 0.97777 1.09493 1.20301 0.90425 0.82466 0.75737 1.90717 1.63456 1.39564 1.51541 1.47971 1.06968 1.05753 1.72015 1.21624 0.80488 0.99967 0.99687 1.21675 0.99291 0.93899 0.99294 1.21057 0.99181 0.95344 0.93341 1.22787 1.04351 0.90958 0.96885 1.22412 1.03309 0.98985 0.78195 1.48701 1.67517 1.08544 1.10363 1.21305 0.95707 0.90173 0.90647 1.19197 0.92079 0.94464 0.95604 1.21530 0.92596 1.20572 1.23597 0.91484 1.26034 0.96542 0.98907 0.98453 1.70109 1.00378 1.42910 1.43857 0.85436 0.76974 0.79318 0.78946 1.18280 1.20979 1.19549 1.21383 0.75478 0.82998 0.90556 1.90629 1.54112 1.73101 1.27456 1.21830 0.91067 1.01374 1.00029 1.22066 0.95405 0.85543 0.99454 0.87119 0.88598 0.89213 0.83632 0.85217 0.92105 0.90714 0.91856 0.88015 0.90345 0.84598 0.91012 0.87904 0.89212 0.92916 0.98282 1.01109 0.92746 0.86803 0.87952 0.92768 0.85742 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.03 10.76 113.37 1.22 0.19 16 2 S -0.27 -5.34 21.52 -56.49 -1.22 -6.55 16 3 C -0.11 -1.60 4.77 71.24 0.34 -1.26 16 4 C 0.52 12.99 7.72 87.66 0.68 13.66 16 5 O -0.57 -19.80 15.28 -3.02 -0.05 -19.85 16 6 N -0.59 -13.93 2.96 -818.65 -2.43 -16.36 16 7 C 0.11 3.06 6.00 86.39 0.52 3.58 16 8 C -0.10 -2.42 4.80 30.52 0.15 -2.28 16 9 C -0.09 -1.81 0.55 -52.81 -0.03 -1.84 16 10 C -0.11 -1.78 6.20 31.54 0.20 -1.59 16 11 C 0.09 1.98 7.35 86.85 0.64 2.61 16 12 N -0.62 -20.47 2.94 -818.05 -2.40 -22.87 16 13 C 0.14 5.89 5.88 86.38 0.51 6.40 16 14 C 0.02 1.32 5.30 29.85 0.16 1.48 16 15 C -0.54 -31.06 9.11 25.60 0.23 -30.82 16 16 H 0.07 3.58 7.74 -2.91 -0.02 3.56 16 17 C 0.00 -0.07 5.46 84.65 0.46 0.39 16 18 N -0.93 -57.75 13.29 21.45 0.28 -57.46 16 19 Si 0.97 44.44 29.54 68.60 2.03 46.46 16 20 H -0.26 -11.05 7.11 99.48 0.71 -10.34 16 21 H -0.28 -12.82 7.11 99.48 0.71 -12.11 16 22 H -0.27 -12.08 7.11 99.48 0.71 -11.37 16 23 C 0.51 16.97 6.24 87.73 0.55 17.51 16 24 O -0.57 -24.54 13.72 -3.04 -0.04 -24.59 16 25 C -0.10 -1.37 4.77 30.51 0.15 -1.23 16 26 C 0.10 1.63 5.93 86.38 0.51 2.14 16 27 H 0.11 0.83 8.14 -2.39 -0.02 0.81 16 28 H 0.10 0.48 8.14 -2.39 -0.02 0.46 16 29 H 0.09 0.57 8.14 -2.39 -0.02 0.55 16 30 H 0.15 1.12 7.70 -2.39 -0.02 1.10 16 31 H 0.13 1.44 7.93 -2.39 -0.02 1.42 16 32 H 0.06 2.24 5.87 -2.38 -0.01 2.22 16 33 H 0.07 2.36 7.01 -2.39 -0.02 2.34 16 34 H 0.06 1.70 8.13 -2.39 -0.02 1.69 16 35 H 0.10 1.85 8.14 -2.39 -0.02 1.83 16 36 H 0.08 1.39 7.88 -2.39 -0.02 1.37 16 37 H 0.14 0.95 7.87 -2.38 -0.02 0.93 16 38 H 0.07 1.68 8.14 -2.39 -0.02 1.66 16 39 H 0.10 1.48 8.14 -2.39 -0.02 1.47 16 40 H 0.09 3.21 8.14 -2.39 -0.02 3.19 16 41 H 0.05 2.33 7.92 -2.39 -0.02 2.31 16 42 H 0.00 -0.07 8.14 -2.39 -0.02 -0.09 16 43 H -0.03 -1.85 8.14 -2.39 -0.02 -1.87 16 44 H 0.26 15.37 8.31 -92.71 -0.77 14.60 16 45 H 0.11 0.82 8.14 -2.39 -0.02 0.80 16 46 H 0.10 1.01 8.14 -2.39 -0.02 0.99 16 47 H 0.05 1.27 6.82 -2.38 -0.02 1.25 16 48 H 0.12 1.00 5.92 -2.39 -0.01 0.98 16 Total: -1.00 -85.90 390.05 3.39 -82.51 By element: Atomic # 1 Polarization: 8.81 SS G_CDS: 0.94 Total: 9.75 kcal Atomic # 6 Polarization: 2.68 SS G_CDS: 6.27 Total: 8.95 kcal Atomic # 7 Polarization: -92.15 SS G_CDS: -4.54 Total: -96.69 kcal Atomic # 8 Polarization: -44.35 SS G_CDS: -0.09 Total: -44.43 kcal Atomic # 14 Polarization: 44.44 SS G_CDS: 2.03 Total: 46.46 kcal Atomic # 16 Polarization: -5.34 SS G_CDS: -1.22 Total: -6.55 kcal Total: -85.90 3.39 -82.51 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001269218695.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.669 kcal (2) G-P(sol) polarization free energy of solvation -85.900 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.569 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.390 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.510 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.179 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds