Wall clock time and date at job start Sat Apr 11 2020 06:05:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35951 * 116.99654 * 2 1 4 4 C 1.38727 * 120.03162 * 0.02562 * 3 2 1 5 5 C 1.38126 * 119.97108 * 179.97438 * 4 3 2 6 6 C 1.38478 * 120.02989 * 359.97438 * 5 4 3 7 7 F 1.35101 * 119.96806 * 180.02562 * 6 5 4 8 8 C 1.38433 * 120.05847 * 359.78648 * 6 5 4 9 9 C 1.38175 * 120.02962 * 0.46730 * 8 6 5 10 10 C 1.50698 * 120.01099 * 179.78831 * 9 8 6 11 11 C 1.50706 * 109.47294 * 264.72055 * 10 9 8 12 12 O 1.21279 * 119.99507 * 0.02562 * 11 10 9 13 13 N 1.34774 * 120.00020 * 180.02562 * 11 10 9 14 14 C 1.46495 * 119.99828 * 0.02562 * 13 11 10 15 15 C 1.53004 * 109.46986 * 90.00387 * 14 13 11 16 16 O 1.42903 * 109.47454 * 64.99600 * 15 14 13 17 17 C 1.46496 * 119.99544 * 180.02562 * 13 11 10 18 18 C 1.52999 * 109.47346 * 90.00236 * 17 13 11 19 19 N 1.46506 * 109.47202 * 179.97438 * 18 17 13 20 20 C 1.36937 * 119.99929 * 179.97438 * 19 18 17 21 21 H 1.08006 * 119.99785 * 0.02562 * 20 19 18 22 22 C 1.38805 * 120.00175 * 180.02562 * 20 19 18 23 23 N 1.31620 * 120.00697 * 180.02562 * 22 20 19 24 24 Si 1.86806 * 119.99780 * 0.02562 * 22 20 19 25 25 H 1.48498 * 109.47542 * 89.99503 * 24 22 20 26 26 H 1.48500 * 109.47034 * 209.99840 * 24 22 20 27 27 H 1.48500 * 109.46995 * 329.99443 * 24 22 20 28 28 H 1.09002 * 109.46773 * 179.97438 * 1 2 3 29 29 H 1.08999 * 109.47276 * 299.99754 * 1 2 3 30 30 H 1.09000 * 109.47214 * 60.00292 * 1 2 3 31 31 H 1.08003 * 120.01214 * 0.02562 * 4 3 2 32 32 H 1.08002 * 119.98600 * 180.02562 * 5 4 3 33 33 H 1.08002 * 119.98118 * 180.22989 * 8 6 5 34 34 H 1.09001 * 109.46665 * 144.72436 * 10 9 8 35 35 H 1.09000 * 109.47722 * 24.72768 * 10 9 8 36 36 H 1.09004 * 109.46971 * 209.99938 * 14 13 11 37 37 H 1.08993 * 109.47768 * 330.00002 * 14 13 11 38 38 H 1.09003 * 109.46797 * 185.00015 * 15 14 13 39 39 H 1.09002 * 109.47041 * 304.99175 * 15 14 13 40 40 H 0.96700 * 113.99874 * 179.97438 * 16 15 14 41 41 H 1.09008 * 109.47096 * 209.99661 * 17 13 11 42 42 H 1.09003 * 109.47776 * 329.99537 * 17 13 11 43 43 H 1.09000 * 109.47153 * 299.99620 * 18 17 13 44 44 H 1.08999 * 109.47054 * 59.99715 * 18 17 13 45 45 H 0.97004 * 119.99901 * 0.02562 * 19 18 17 46 46 H 0.96990 * 120.00137 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0461 1.2114 0.0000 4 6 1.2911 2.3752 0.0005 5 6 1.9194 3.6053 0.0011 6 6 3.3023 3.6771 0.0016 7 9 3.9156 4.8809 0.0027 8 6 4.0569 2.5165 0.0061 9 6 3.4310 1.2847 0.0002 10 6 4.2529 0.0216 0.0003 11 6 4.4231 -0.4671 -1.4151 12 8 3.9263 0.1500 -2.3335 13 7 5.1274 -1.5897 -1.6604 14 6 5.7269 -2.3353 -0.5509 15 6 4.7307 -3.3780 -0.0399 16 8 4.4905 -4.3482 -1.0613 17 6 5.2932 -2.0643 -3.0363 18 6 6.5560 -1.4465 -3.6403 19 7 6.7222 -1.9216 -5.0161 20 6 7.7901 -1.4993 -5.7620 21 1 8.5101 -0.8163 -5.3358 22 6 7.9473 -1.9490 -7.0657 23 7 8.9740 -1.5436 -7.7826 24 14 6.7016 -3.1298 -7.8030 25 1 5.6184 -2.3580 -8.4633 26 1 7.3734 -3.9963 -8.8046 27 1 6.1228 -3.9741 -6.7271 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 0.2125 2.3194 0.0014 32 1 1.3319 4.5115 0.0019 33 1 5.1354 2.5740 0.0102 34 1 3.7453 -0.7420 0.5897 35 1 5.2317 0.2249 0.4347 36 1 6.6315 -2.8357 -0.8964 37 1 5.9781 -1.6468 0.2558 38 1 5.1413 -3.8717 0.8409 39 1 3.7935 -2.8872 0.2226 40 1 3.8671 -5.0419 -0.8061 41 1 5.3840 -3.1506 -3.0376 42 1 4.4264 -1.7716 -3.6288 43 1 6.4653 -0.3603 -3.6391 44 1 7.4228 -1.7393 -3.0479 45 1 6.0753 -2.5348 -5.3990 46 1 9.0836 -1.8576 -8.6937 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001272284422.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:05:21 Heat of formation + Delta-G solvation = -117.511083 kcal Electronic energy + Delta-G solvation = -29995.439822 eV Core-core repulsion = 25608.088501 eV Total energy + Delta-G solvation = -4387.351321 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 340.163 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -48.95134 -40.75055 -39.63845 -37.56258 -37.15881 -35.64376 -34.40312 -33.22751 -31.54863 -30.14476 -29.72793 -28.72779 -27.58552 -26.91538 -23.63506 -23.23208 -22.61728 -22.04528 -21.20753 -19.12006 -18.30789 -17.90522 -17.49023 -17.38448 -17.19905 -16.83197 -16.18137 -16.01765 -15.55822 -15.30960 -14.94728 -14.72824 -14.60747 -14.33974 -13.99180 -13.78261 -13.72179 -13.46053 -13.22729 -13.07332 -12.94737 -12.59046 -12.55316 -12.45681 -12.19548 -12.09657 -11.57777 -11.41492 -11.20749 -11.13458 -10.99516 -10.96557 -10.61811 -10.23065 -10.08993 -9.74902 -9.52561 -9.23208 -8.81125 -8.48249 -8.28603 -7.15336 -5.69089 -3.04392 0.86362 0.99748 2.76879 2.93335 2.99479 3.37463 3.45184 3.48912 3.51951 4.03263 4.05246 4.28510 4.39420 4.55079 4.67109 4.67251 4.78197 4.83044 4.86256 4.94734 4.98108 5.06211 5.10375 5.15374 5.16787 5.29870 5.40610 5.49902 5.57476 5.61948 5.72599 5.79967 5.82608 5.87094 5.90767 6.03269 6.17203 6.45471 6.55640 6.75116 6.93903 7.02407 7.41130 7.56909 8.06823 8.33798 8.49665 9.28782 10.01239 10.21281 11.49450 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.010679 B = 0.003039 C = 0.002673 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2621.307417 B = 9211.405546 C =10473.364935 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.310 6.310 3 C 0.135 3.865 4 C -0.181 4.181 5 C -0.114 4.114 6 C 0.063 3.937 7 F -0.141 7.141 8 C -0.101 4.101 9 C -0.067 4.067 10 C -0.095 4.095 11 C 0.515 3.485 12 O -0.523 6.523 13 N -0.600 5.600 14 C 0.105 3.895 15 C 0.057 3.943 16 O -0.563 6.563 17 C 0.110 3.890 18 C 0.147 3.853 19 N -0.753 5.753 20 C -0.240 4.240 21 H 0.089 0.911 22 C 0.003 3.997 23 N -0.936 5.936 24 Si 0.885 3.115 25 H -0.284 1.284 26 H -0.291 1.291 27 H -0.276 1.276 28 H 0.100 0.900 29 H 0.055 0.945 30 H 0.057 0.943 31 H 0.137 0.863 32 H 0.137 0.863 33 H 0.143 0.857 34 H 0.106 0.894 35 H 0.104 0.896 36 H 0.093 0.907 37 H 0.092 0.908 38 H 0.054 0.946 39 H 0.047 0.953 40 H 0.376 0.624 41 H 0.085 0.915 42 H 0.079 0.921 43 H 0.029 0.971 44 H 0.024 0.976 45 H 0.361 0.639 46 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.218 1.568 26.782 32.429 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.223 6.223 3 C 0.089 3.911 4 C -0.200 4.200 5 C -0.133 4.133 6 C 0.044 3.956 7 F -0.119 7.119 8 C -0.120 4.120 9 C -0.068 4.068 10 C -0.134 4.134 11 C 0.302 3.698 12 O -0.398 6.398 13 N -0.333 5.333 14 C -0.019 4.019 15 C -0.022 4.022 16 O -0.368 6.368 17 C -0.012 4.012 18 C 0.018 3.982 19 N -0.399 5.399 20 C -0.370 4.370 21 H 0.107 0.893 22 C -0.192 4.192 23 N -0.584 5.584 24 Si 0.715 3.285 25 H -0.210 1.210 26 H -0.217 1.217 27 H -0.202 1.202 28 H 0.118 0.882 29 H 0.074 0.926 30 H 0.076 0.924 31 H 0.155 0.845 32 H 0.155 0.845 33 H 0.160 0.840 34 H 0.124 0.876 35 H 0.122 0.878 36 H 0.111 0.889 37 H 0.111 0.889 38 H 0.072 0.928 39 H 0.066 0.934 40 H 0.223 0.777 41 H 0.103 0.897 42 H 0.097 0.903 43 H 0.047 0.953 44 H 0.042 0.958 45 H 0.193 0.807 46 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -17.744 2.246 25.886 31.464 hybrid contribution -1.303 -0.828 -0.302 1.573 sum -19.047 1.418 25.584 31.927 Atomic orbital electron populations 1.23084 0.78231 1.04136 1.01376 1.86080 1.21438 1.26383 1.88389 1.18730 0.91540 0.84508 0.96304 1.21008 1.00292 0.91289 1.07368 1.20893 0.92707 0.98669 1.00988 1.17458 0.90790 0.80574 1.06826 1.91497 1.83313 1.42813 1.94322 1.20849 1.00814 0.90060 1.00267 1.18413 0.90264 0.94142 1.04016 1.20590 1.01073 0.95776 0.96002 1.20370 0.78307 0.80429 0.90717 1.90747 1.47489 1.55454 1.46140 1.47737 1.52824 1.25117 1.07640 1.21717 0.96557 0.93451 0.90124 1.22719 0.98679 0.90503 0.90308 1.86584 1.68012 1.40768 1.41434 1.21696 0.99564 0.99402 0.80581 1.20900 0.94091 0.97091 0.86084 1.42561 1.30231 1.56327 1.10793 1.19043 1.00976 1.22744 0.94233 0.89290 1.24658 0.97814 1.00253 0.96510 1.69703 1.30353 1.48456 1.09914 0.86525 0.81514 0.81475 0.78951 1.21035 1.21739 1.20224 0.88153 0.92622 0.92416 0.84505 0.84525 0.83959 0.87611 0.87781 0.88882 0.88946 0.92774 0.93449 0.77711 0.89651 0.90293 0.95333 0.95791 0.80656 0.93111 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.17 9.81 101.05 0.99 1.16 16 2 O -0.31 -3.20 9.63 -19.59 -0.19 -3.39 16 3 C 0.13 1.50 6.66 -39.24 -0.26 1.24 16 4 C -0.18 -1.72 9.04 -39.44 -0.36 -2.08 16 5 C -0.11 -1.12 10.02 -39.53 -0.40 -1.52 16 6 C 0.06 0.73 7.30 -39.42 -0.29 0.44 16 7 F -0.14 -1.73 17.27 2.25 0.04 -1.69 16 8 C -0.10 -1.16 9.65 -39.53 -0.38 -1.54 16 9 C -0.07 -0.78 4.39 -104.48 -0.46 -1.23 16 10 C -0.09 -0.96 4.10 -29.03 -0.12 -1.08 16 11 C 0.51 7.61 7.67 -10.98 -0.08 7.53 16 12 O -0.52 -10.23 15.61 5.56 0.09 -10.14 16 13 N -0.60 -8.41 2.44 -173.69 -0.42 -8.84 16 14 C 0.11 1.02 5.62 -4.04 -0.02 1.00 16 15 C 0.06 0.45 7.38 37.16 0.27 0.73 16 16 O -0.56 -5.71 12.48 -35.23 -0.44 -6.15 16 17 C 0.11 1.95 5.34 -4.04 -0.02 1.93 16 18 C 0.15 3.15 6.58 -4.04 -0.03 3.13 16 19 N -0.75 -19.44 5.41 -59.91 -0.32 -19.76 16 20 C -0.24 -7.23 10.47 -15.06 -0.16 -7.39 16 21 H 0.09 2.85 8.06 -52.48 -0.42 2.43 16 22 C 0.00 0.10 5.50 -17.43 -0.10 0.00 16 23 N -0.94 -30.53 13.97 55.49 0.78 -29.75 16 24 Si 0.89 23.14 27.74 -169.99 -4.71 18.43 16 25 H -0.28 -7.41 7.11 56.52 0.40 -7.01 16 26 H -0.29 -7.60 7.11 56.52 0.40 -7.20 16 27 H -0.28 -6.78 6.52 56.52 0.37 -6.41 16 28 H 0.10 0.47 8.14 -51.93 -0.42 0.05 16 29 H 0.06 0.25 7.66 -51.93 -0.40 -0.15 16 30 H 0.06 0.37 7.66 -51.93 -0.40 -0.03 16 31 H 0.14 0.92 6.30 -52.48 -0.33 0.59 16 32 H 0.14 1.03 8.06 -52.49 -0.42 0.61 16 33 H 0.14 1.42 8.06 -52.49 -0.42 1.00 16 34 H 0.11 0.87 6.81 -51.93 -0.35 0.51 16 35 H 0.10 0.77 7.31 -51.93 -0.38 0.39 16 36 H 0.09 0.98 8.07 -51.93 -0.42 0.56 16 37 H 0.09 0.60 6.44 -51.93 -0.33 0.26 16 38 H 0.05 0.30 8.14 -51.93 -0.42 -0.13 16 39 H 0.05 0.36 7.30 -51.93 -0.38 -0.02 16 40 H 0.38 2.15 9.12 45.56 0.42 2.56 16 41 H 0.09 1.48 7.12 -51.92 -0.37 1.11 16 42 H 0.08 1.55 7.42 -51.93 -0.39 1.17 16 43 H 0.03 0.67 8.14 -51.93 -0.42 0.25 16 44 H 0.02 0.51 8.14 -51.93 -0.42 0.08 16 45 H 0.36 9.05 5.53 -40.82 -0.23 8.82 16 46 H 0.26 8.00 8.31 -40.82 -0.34 7.66 16 LS Contribution 386.60 15.07 5.83 5.83 Total: -1.00 -39.58 386.60 -6.45 -46.03 By element: Atomic # 1 Polarization: 12.81 SS G_CDS: -5.69 Total: 7.12 kcal Atomic # 6 Polarization: 3.71 SS G_CDS: -1.40 Total: 2.31 kcal Atomic # 7 Polarization: -58.38 SS G_CDS: 0.03 Total: -58.35 kcal Atomic # 8 Polarization: -19.14 SS G_CDS: -0.54 Total: -19.68 kcal Atomic # 9 Polarization: -1.73 SS G_CDS: 0.04 Total: -1.69 kcal Atomic # 14 Polarization: 23.14 SS G_CDS: -4.71 Total: 18.43 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -39.58 -6.45 -46.03 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001272284422.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -71.477 kcal (2) G-P(sol) polarization free energy of solvation -39.583 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.059 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.452 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.034 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.511 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds