Wall clock time and date at job start Sat Apr 11 2020 06:05:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35951 * 116.99654 * 2 1 4 4 C 1.38727 * 120.03162 * 0.02562 * 3 2 1 5 5 C 1.38126 * 119.97108 * 179.97438 * 4 3 2 6 6 C 1.38478 * 120.02989 * 359.97438 * 5 4 3 7 7 F 1.35101 * 119.96806 * 180.02562 * 6 5 4 8 8 C 1.38433 * 120.05847 * 359.78648 * 6 5 4 9 9 C 1.38175 * 120.02962 * 0.46730 * 8 6 5 10 10 C 1.50698 * 120.01099 * 179.78831 * 9 8 6 11 11 C 1.50706 * 109.47294 * 264.72055 * 10 9 8 12 12 O 1.21279 * 119.99507 * 0.02562 * 11 10 9 13 13 N 1.34774 * 120.00020 * 180.02562 * 11 10 9 14 14 C 1.46495 * 119.99828 * 0.02562 * 13 11 10 15 15 C 1.53004 * 109.46986 * 90.00387 * 14 13 11 16 16 O 1.42903 * 109.47454 * 64.99600 * 15 14 13 17 17 C 1.46496 * 119.99544 * 180.02562 * 13 11 10 18 18 C 1.52999 * 109.47346 * 90.00236 * 17 13 11 19 19 N 1.46506 * 109.47202 * 179.97438 * 18 17 13 20 20 C 1.36937 * 119.99929 * 179.97438 * 19 18 17 21 21 H 1.08006 * 119.99785 * 0.02562 * 20 19 18 22 22 C 1.38805 * 120.00175 * 180.02562 * 20 19 18 23 23 N 1.31620 * 120.00697 * 180.02562 * 22 20 19 24 24 Si 1.86806 * 119.99780 * 0.02562 * 22 20 19 25 25 H 1.48498 * 109.47542 * 89.99503 * 24 22 20 26 26 H 1.48500 * 109.47034 * 209.99840 * 24 22 20 27 27 H 1.48500 * 109.46995 * 329.99443 * 24 22 20 28 28 H 1.09002 * 109.46773 * 179.97438 * 1 2 3 29 29 H 1.08999 * 109.47276 * 299.99754 * 1 2 3 30 30 H 1.09000 * 109.47214 * 60.00292 * 1 2 3 31 31 H 1.08003 * 120.01214 * 0.02562 * 4 3 2 32 32 H 1.08002 * 119.98600 * 180.02562 * 5 4 3 33 33 H 1.08002 * 119.98118 * 180.22989 * 8 6 5 34 34 H 1.09001 * 109.46665 * 144.72436 * 10 9 8 35 35 H 1.09000 * 109.47722 * 24.72768 * 10 9 8 36 36 H 1.09004 * 109.46971 * 209.99938 * 14 13 11 37 37 H 1.08993 * 109.47768 * 330.00002 * 14 13 11 38 38 H 1.09003 * 109.46797 * 185.00015 * 15 14 13 39 39 H 1.09002 * 109.47041 * 304.99175 * 15 14 13 40 40 H 0.96700 * 113.99874 * 179.97438 * 16 15 14 41 41 H 1.09008 * 109.47096 * 209.99661 * 17 13 11 42 42 H 1.09003 * 109.47776 * 329.99537 * 17 13 11 43 43 H 1.09000 * 109.47153 * 299.99620 * 18 17 13 44 44 H 1.08999 * 109.47054 * 59.99715 * 18 17 13 45 45 H 0.97004 * 119.99901 * 0.02562 * 19 18 17 46 46 H 0.96990 * 120.00137 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0461 1.2114 0.0000 4 6 1.2911 2.3752 0.0005 5 6 1.9194 3.6053 0.0011 6 6 3.3023 3.6771 0.0016 7 9 3.9156 4.8809 0.0027 8 6 4.0569 2.5165 0.0061 9 6 3.4310 1.2847 0.0002 10 6 4.2529 0.0216 0.0003 11 6 4.4231 -0.4671 -1.4151 12 8 3.9263 0.1500 -2.3335 13 7 5.1274 -1.5897 -1.6604 14 6 5.7269 -2.3353 -0.5509 15 6 4.7307 -3.3780 -0.0399 16 8 4.4905 -4.3482 -1.0613 17 6 5.2932 -2.0643 -3.0363 18 6 6.5560 -1.4465 -3.6403 19 7 6.7222 -1.9216 -5.0161 20 6 7.7901 -1.4993 -5.7620 21 1 8.5101 -0.8163 -5.3358 22 6 7.9473 -1.9490 -7.0657 23 7 8.9740 -1.5436 -7.7826 24 14 6.7016 -3.1298 -7.8030 25 1 5.6184 -2.3580 -8.4633 26 1 7.3734 -3.9963 -8.8046 27 1 6.1228 -3.9741 -6.7271 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 0.2125 2.3194 0.0014 32 1 1.3319 4.5115 0.0019 33 1 5.1354 2.5740 0.0102 34 1 3.7453 -0.7420 0.5897 35 1 5.2317 0.2249 0.4347 36 1 6.6315 -2.8357 -0.8964 37 1 5.9781 -1.6468 0.2558 38 1 5.1413 -3.8717 0.8409 39 1 3.7935 -2.8872 0.2226 40 1 3.8671 -5.0419 -0.8061 41 1 5.3840 -3.1506 -3.0376 42 1 4.4264 -1.7716 -3.6288 43 1 6.4653 -0.3603 -3.6391 44 1 7.4228 -1.7393 -3.0479 45 1 6.0753 -2.5348 -5.3990 46 1 9.0836 -1.8576 -8.6937 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001272284422.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:05:20 Heat of formation + Delta-G solvation = -148.040586 kcal Electronic energy + Delta-G solvation = -29996.763681 eV Core-core repulsion = 25608.088501 eV Total energy + Delta-G solvation = -4388.675180 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 340.163 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -49.83774 -41.60593 -40.62552 -38.32157 -37.97866 -37.20160 -35.88516 -34.20546 -33.55016 -31.18549 -30.79316 -29.61536 -28.52789 -27.88828 -25.38602 -24.01651 -23.55037 -23.25930 -22.66042 -20.34031 -19.55150 -19.02696 -18.64343 -18.22346 -18.01611 -17.73590 -17.35896 -16.76137 -16.46334 -16.40379 -16.36173 -15.67821 -15.65202 -15.46603 -15.39794 -15.28550 -14.86372 -14.63291 -14.39506 -14.11116 -14.00084 -13.72733 -13.42540 -13.36681 -13.23851 -13.05555 -12.92225 -12.79045 -12.60907 -12.47141 -12.17987 -12.08817 -11.87440 -11.84877 -11.80388 -11.04038 -10.97879 -10.77133 -10.05115 -9.66881 -9.38407 -9.07145 -8.07136 -5.42659 0.08489 0.19358 1.35528 1.40266 1.47276 1.67108 1.94984 2.29366 2.45554 2.55783 3.23736 3.25702 3.46489 3.52824 3.64085 3.69271 3.75165 4.02438 4.11992 4.13867 4.21722 4.25421 4.29869 4.39211 4.40372 4.41030 4.44361 4.55926 4.60796 4.68515 4.72102 4.73827 4.81616 4.98604 5.04894 5.06295 5.07924 5.10455 5.25560 5.53184 5.68625 5.69250 6.16079 6.33232 6.46076 7.00891 7.01263 7.22535 7.75070 7.96269 9.14291 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.010679 B = 0.003039 C = 0.002673 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2621.307417 B = 9211.405546 C =10473.364935 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 O -0.325 6.325 3 C 0.126 3.874 4 C -0.182 4.182 5 C -0.113 4.113 6 C 0.037 3.963 7 F -0.151 7.151 8 C -0.112 4.112 9 C -0.088 4.088 10 C -0.084 4.084 11 C 0.509 3.491 12 O -0.580 6.580 13 N -0.598 5.598 14 C 0.094 3.906 15 C 0.059 3.941 16 O -0.594 6.594 17 C 0.129 3.871 18 C 0.151 3.849 19 N -0.755 5.755 20 C -0.242 4.242 21 H 0.053 0.947 22 C -0.061 4.061 23 N -0.982 5.982 24 Si 0.958 3.042 25 H -0.280 1.280 26 H -0.287 1.287 27 H -0.249 1.249 28 H 0.117 0.883 29 H 0.077 0.923 30 H 0.055 0.945 31 H 0.165 0.835 32 H 0.159 0.841 33 H 0.148 0.852 34 H 0.132 0.868 35 H 0.135 0.865 36 H 0.084 0.916 37 H 0.129 0.871 38 H 0.087 0.913 39 H 0.054 0.946 40 H 0.393 0.607 41 H 0.095 0.905 42 H 0.056 0.944 43 H 0.003 0.997 44 H 0.032 0.968 45 H 0.367 0.633 46 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.457 -0.167 29.042 35.524 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 O -0.238 6.238 3 C 0.080 3.920 4 C -0.200 4.200 5 C -0.131 4.131 6 C 0.018 3.982 7 F -0.130 7.130 8 C -0.131 4.131 9 C -0.089 4.089 10 C -0.123 4.123 11 C 0.299 3.701 12 O -0.460 6.460 13 N -0.330 5.330 14 C -0.028 4.028 15 C -0.019 4.019 16 O -0.402 6.402 17 C 0.005 3.995 18 C 0.024 3.976 19 N -0.402 5.402 20 C -0.373 4.373 21 H 0.071 0.929 22 C -0.253 4.253 23 N -0.632 5.632 24 Si 0.784 3.216 25 H -0.207 1.207 26 H -0.213 1.213 27 H -0.173 1.173 28 H 0.135 0.865 29 H 0.096 0.904 30 H 0.074 0.926 31 H 0.183 0.817 32 H 0.176 0.824 33 H 0.166 0.834 34 H 0.150 0.850 35 H 0.152 0.848 36 H 0.102 0.898 37 H 0.147 0.853 38 H 0.105 0.895 39 H 0.073 0.927 40 H 0.243 0.757 41 H 0.113 0.887 42 H 0.075 0.925 43 H 0.021 0.979 44 H 0.050 0.950 45 H 0.200 0.800 46 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -20.002 0.476 28.235 34.605 hybrid contribution -0.597 -0.240 -0.942 1.141 sum -20.598 0.236 27.292 34.194 Atomic orbital electron populations 1.23373 0.76365 1.05658 1.02346 1.86051 1.23440 1.26098 1.88213 1.18972 0.91786 0.85344 0.95903 1.21344 1.01705 0.90592 1.06358 1.21196 0.92215 0.99877 0.99837 1.17755 0.91757 0.80352 1.08368 1.91463 1.83604 1.43328 1.94573 1.21022 1.01324 0.90347 1.00431 1.18630 0.90996 0.94490 1.04771 1.20628 1.02921 0.95800 0.92914 1.21216 0.77072 0.79680 0.92112 1.90718 1.49890 1.57117 1.48238 1.47824 1.52704 1.25400 1.07080 1.22156 0.96601 0.94500 0.89570 1.22768 0.98594 0.89937 0.90631 1.86522 1.68886 1.41842 1.42983 1.21245 0.96283 0.99344 0.82651 1.20964 0.96515 0.95707 0.84458 1.42535 1.29120 1.56372 1.12133 1.18994 1.01384 1.21967 0.94907 0.92897 1.25547 1.00223 1.02587 0.96914 1.69883 1.32691 1.50217 1.10391 0.85366 0.78562 0.79129 0.78515 1.20675 1.21342 1.17307 0.86500 0.90439 0.92582 0.81749 0.82370 0.83431 0.85022 0.84766 0.89760 0.85284 0.89480 0.92737 0.75714 0.88716 0.92496 0.97873 0.95013 0.79980 0.93072 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.17 9.81 113.37 1.11 1.29 16 2 O -0.32 -6.06 9.63 -93.00 -0.90 -6.95 16 3 C 0.13 2.62 6.66 22.49 0.15 2.77 16 4 C -0.18 -3.14 9.04 22.36 0.20 -2.94 16 5 C -0.11 -2.10 10.02 22.30 0.22 -1.88 16 6 C 0.04 0.85 7.30 22.37 0.16 1.02 16 7 F -0.15 -3.77 17.27 44.97 0.78 -2.99 16 8 C -0.11 -2.56 9.65 22.30 0.22 -2.34 16 9 C -0.09 -1.93 4.39 -19.77 -0.09 -2.02 16 10 C -0.08 -1.52 4.10 29.10 0.12 -1.40 16 11 C 0.51 14.63 7.67 87.66 0.67 15.30 16 12 O -0.58 -23.11 15.61 -3.02 -0.05 -23.15 16 13 N -0.60 -16.00 2.44 -821.82 -2.00 -18.00 16 14 C 0.09 1.55 5.62 86.38 0.49 2.03 16 15 C 0.06 0.73 7.38 71.98 0.53 1.26 16 16 O -0.59 -10.49 12.48 -148.98 -1.86 -12.35 16 17 C 0.13 4.52 5.34 86.38 0.46 4.98 16 18 C 0.15 6.59 6.58 86.38 0.57 7.16 16 19 N -0.76 -39.20 5.41 -343.44 -1.86 -41.05 16 20 C -0.24 -14.92 10.47 84.03 0.88 -14.04 16 21 H 0.05 3.57 8.06 -2.91 -0.02 3.54 16 22 C -0.06 -3.80 5.50 84.86 0.47 -3.33 16 23 N -0.98 -65.47 13.97 21.65 0.30 -65.17 16 24 Si 0.96 47.75 27.74 68.60 1.90 49.65 16 25 H -0.28 -13.80 7.11 99.48 0.71 -13.10 16 26 H -0.29 -14.10 7.11 99.48 0.71 -13.39 16 27 H -0.25 -11.17 6.52 99.48 0.65 -10.53 16 28 H 0.12 0.79 8.14 -2.39 -0.02 0.77 16 29 H 0.08 0.46 7.66 -2.39 -0.02 0.44 16 30 H 0.06 0.60 7.66 -2.39 -0.02 0.58 16 31 H 0.17 1.77 6.30 -2.91 -0.02 1.75 16 32 H 0.16 2.12 8.06 -2.91 -0.02 2.10 16 33 H 0.15 2.97 8.06 -2.91 -0.02 2.95 16 34 H 0.13 1.70 6.81 -2.39 -0.02 1.68 16 35 H 0.13 1.57 7.31 -2.39 -0.02 1.56 16 36 H 0.08 1.58 8.07 -2.38 -0.02 1.56 16 37 H 0.13 1.15 6.44 -2.39 -0.02 1.14 16 38 H 0.09 0.55 8.14 -2.39 -0.02 0.53 16 39 H 0.05 0.61 7.30 -2.39 -0.02 0.59 16 40 H 0.39 3.47 9.12 -74.06 -0.68 2.80 16 41 H 0.09 3.16 7.12 -2.38 -0.02 3.14 16 42 H 0.06 2.26 7.42 -2.39 -0.02 2.24 16 43 H 0.00 0.16 8.14 -2.39 -0.02 0.14 16 44 H 0.03 1.34 8.14 -2.39 -0.02 1.32 16 45 H 0.37 18.03 5.53 -92.71 -0.51 17.52 16 46 H 0.26 16.38 8.31 -92.72 -0.77 15.61 16 Total: -1.00 -89.48 386.60 2.27 -87.22 By element: Atomic # 1 Polarization: 25.16 SS G_CDS: -0.22 Total: 24.94 kcal Atomic # 6 Polarization: 1.70 SS G_CDS: 6.16 Total: 7.87 kcal Atomic # 7 Polarization: -120.67 SS G_CDS: -3.56 Total: -124.23 kcal Atomic # 8 Polarization: -39.65 SS G_CDS: -2.80 Total: -42.45 kcal Atomic # 9 Polarization: -3.77 SS G_CDS: 0.78 Total: -2.99 kcal Atomic # 14 Polarization: 47.75 SS G_CDS: 1.90 Total: 49.65 kcal Total: -89.48 2.27 -87.22 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001272284422.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.821 kcal (2) G-P(sol) polarization free energy of solvation -89.484 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -150.306 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.265 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.219 kcal (6) G-S(sol) free energy of system = (1) + (5) -148.041 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds