Wall clock time and date at job start Sat Apr 11 2020 06:05:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86798 * 120.00127 * 2 1 4 4 H 1.48501 * 109.47083 * 239.99973 * 3 2 1 5 5 H 1.48494 * 109.47517 * 0.02562 * 3 2 1 6 6 H 1.48502 * 109.46906 * 120.00669 * 3 2 1 7 7 C 1.38820 * 119.99678 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99635 * 180.02562 * 7 2 1 9 9 N 1.36934 * 119.99728 * 359.97438 * 7 2 1 10 10 C 1.46507 * 119.99590 * 180.02562 * 9 7 2 11 11 C 1.52995 * 109.46926 * 180.02562 * 10 9 7 12 12 C 1.53007 * 109.47024 * 180.02562 * 11 10 9 13 13 H 1.09000 * 110.88645 * 57.42721 * 12 11 10 14 14 C 1.55163 * 111.00260 * 181.34941 * 12 11 10 15 15 C 1.54333 * 103.01847 * 153.38132 * 14 12 11 16 16 N 1.47024 * 107.26368 * 338.13944 * 15 14 12 17 17 C 1.34777 * 125.64502 * 178.85642 * 16 15 14 18 18 O 1.21552 * 119.99891 * 185.53236 * 17 16 15 19 19 C 1.47868 * 120.00226 * 5.52321 * 17 16 15 20 20 C 1.40621 * 119.75520 * 172.87669 * 19 17 16 21 21 C 1.35728 * 120.83230 * 180.02562 * 20 19 17 22 22 C 1.40707 * 120.08478 * 0.02562 * 21 20 19 23 23 N 1.33793 * 120.85202 * 179.97438 * 22 21 20 24 24 C 1.31333 * 119.76018 * 179.97438 * 23 22 21 25 25 C 1.39757 * 120.70800 * 359.97438 * 24 23 22 26 26 N 1.31281 * 120.67579 * 0.02562 * 25 24 23 27 27 C 1.33813 * 119.73695 * 359.97438 * 26 25 24 28 28 C 1.38415 * 119.75336 * 352.90164 * 19 17 16 29 29 C 1.47420 * 108.70638 * 358.58399 * 16 15 14 30 30 H 0.97003 * 119.99684 * 359.97438 * 1 2 3 31 31 H 0.97002 * 120.00728 * 0.02562 * 9 7 2 32 32 H 1.09003 * 109.46951 * 60.00398 * 10 9 7 33 33 H 1.08997 * 109.47180 * 300.00461 * 10 9 7 34 34 H 1.08993 * 109.47693 * 59.99761 * 11 10 9 35 35 H 1.09006 * 109.47280 * 300.00069 * 11 10 9 36 36 H 1.09007 * 110.71547 * 271.93765 * 14 12 11 37 37 H 1.08994 * 110.72337 * 35.03143 * 14 12 11 38 38 H 1.08995 * 109.98747 * 218.66483 * 15 14 12 39 39 H 1.08999 * 109.77845 * 97.49549 * 15 14 12 40 40 H 1.08001 * 119.58262 * 0.05094 * 20 19 17 41 41 H 1.07998 * 119.95305 * 179.72733 * 21 20 19 42 42 H 1.07999 * 119.64468 * 180.02562 * 24 23 22 43 43 H 1.07995 * 119.66079 * 179.97438 * 25 24 23 44 44 H 1.08004 * 120.24918 * 359.97438 * 28 19 17 45 45 H 1.09004 * 110.36788 * 143.19270 * 29 16 15 46 46 H 1.08996 * 110.36908 * 265.52367 * 29 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1040 1.6963 -1.2125 5 1 1.2853 2.7465 0.0006 6 1 3.1041 1.6962 1.2124 7 6 2.0102 -1.2023 -0.0005 8 1 3.0902 -1.2022 -0.0001 9 7 1.3254 -2.3881 -0.0005 10 6 2.0579 -3.6569 -0.0005 11 6 1.0636 -4.8197 -0.0012 12 6 1.8286 -6.1448 -0.0005 13 1 2.4971 -6.2072 0.8581 14 6 0.8525 -7.3504 -0.0353 15 6 1.6926 -8.4588 -0.7044 16 7 2.7633 -7.7964 -1.4636 17 6 3.7246 -8.4201 -2.1731 18 8 4.6206 -7.7746 -2.6810 19 6 3.6895 -9.8896 -2.3333 20 6 4.6046 -10.5197 -3.1953 21 6 4.5915 -11.8670 -3.3592 22 6 3.6546 -12.6531 -2.6634 23 7 3.6277 -13.9823 -2.8139 24 6 2.7444 -14.6953 -2.1535 25 6 1.8305 -14.0808 -1.2931 26 7 1.8369 -12.7784 -1.1286 27 6 2.7273 -12.0302 -1.7904 28 6 2.7558 -10.6347 -1.6342 29 6 2.6074 -6.3369 -1.3258 30 1 -0.4850 0.8401 0.0004 31 1 0.3554 -2.3881 -0.0005 32 1 2.6845 -3.7146 0.8895 33 1 2.6846 -3.7146 -0.8904 34 1 0.4373 -4.7618 -0.8913 35 1 0.4366 -4.7621 0.8886 36 1 0.5616 -7.6403 0.9745 37 1 -0.0264 -7.1179 -0.6365 38 1 1.0676 -9.0442 -1.3787 39 1 2.1250 -9.1055 0.0590 40 1 5.3272 -9.9241 -3.7334 41 1 5.2980 -12.3357 -4.0283 42 1 2.7246 -15.7682 -2.2760 43 1 1.1111 -14.6835 -0.7587 44 1 2.0548 -10.1467 -0.9731 45 1 3.5833 -5.8551 -1.2654 46 1 2.0363 -5.9356 -2.1629 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001272632743.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:05:34 Heat of formation + Delta-G solvation = 70.803577 kcal Electronic energy + Delta-G solvation = -27927.091056 eV Core-core repulsion = 24010.967647 eV Total energy + Delta-G solvation = -3916.123409 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.96027 -40.53874 -38.25804 -37.27210 -35.46564 -35.12519 -33.24067 -31.55732 -31.27563 -30.89612 -29.62414 -27.32877 -26.26020 -25.10634 -24.15443 -23.59189 -22.48755 -21.31454 -20.88531 -20.10097 -19.14321 -18.36424 -17.45679 -17.10471 -16.91450 -16.31517 -15.79794 -15.51054 -15.24830 -15.01567 -14.68998 -14.61309 -14.21541 -14.10082 -13.52844 -13.51062 -13.36297 -13.02314 -12.94749 -12.73075 -12.40867 -12.26432 -12.19209 -12.17629 -11.90131 -11.68416 -11.24195 -11.07930 -10.81670 -10.67616 -10.48840 -10.37560 -10.24552 -10.00273 -9.66381 -9.58997 -9.50698 -9.11422 -8.88613 -8.84500 -6.90224 -5.74614 -3.03102 -0.45362 -0.05952 1.31301 1.91539 2.62118 2.87451 3.43542 3.46363 3.50360 3.51649 3.53299 3.57834 3.71814 4.02089 4.20377 4.32493 4.40533 4.52499 4.56074 4.64778 4.68616 4.70323 4.82522 4.96162 5.08737 5.16500 5.24847 5.32321 5.49319 5.51730 5.57030 5.62768 5.63242 5.70943 5.71381 5.80052 5.85682 5.99558 6.06133 6.11796 6.22049 6.35617 6.36664 6.70748 6.84225 6.88129 7.17072 7.20245 7.72147 7.84063 8.44637 9.55574 10.13675 10.48134 11.48298 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.028624 B = 0.001831 C = 0.001736 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 977.955754 B =15286.115904 C =16128.000190 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.015 4.015 3 Si 0.908 3.092 4 H -0.286 1.286 5 H -0.291 1.291 6 H -0.286 1.286 7 C -0.240 4.240 8 H 0.070 0.930 9 N -0.734 5.734 10 C 0.150 3.850 11 C -0.114 4.114 12 C -0.094 4.094 13 H 0.087 0.913 14 C -0.130 4.130 15 C 0.085 3.915 16 N -0.610 5.610 17 C 0.569 3.431 18 O -0.527 6.527 19 C -0.102 4.102 20 C -0.050 4.050 21 C -0.090 4.090 22 C 0.092 3.908 23 N -0.428 5.428 24 C 0.083 3.917 25 C 0.073 3.927 26 N -0.417 5.417 27 C 0.069 3.931 28 C -0.083 4.083 29 C 0.109 3.891 30 H 0.255 0.745 31 H 0.383 0.617 32 H 0.018 0.982 33 H 0.020 0.980 34 H 0.066 0.934 35 H 0.070 0.930 36 H 0.086 0.914 37 H 0.083 0.917 38 H 0.080 0.920 39 H 0.080 0.920 40 H 0.150 0.850 41 H 0.147 0.853 42 H 0.177 0.823 43 H 0.178 0.822 44 H 0.182 0.818 45 H 0.086 0.914 46 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.612 -33.591 -2.850 33.813 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.583 5.583 2 C -0.211 4.211 3 Si 0.739 3.261 4 H -0.213 1.213 5 H -0.217 1.217 6 H -0.213 1.213 7 C -0.371 4.371 8 H 0.088 0.912 9 N -0.378 5.378 10 C 0.023 3.977 11 C -0.153 4.153 12 C -0.114 4.114 13 H 0.105 0.895 14 C -0.168 4.168 15 C -0.037 4.037 16 N -0.343 5.343 17 C 0.358 3.642 18 O -0.404 6.404 19 C -0.107 4.107 20 C -0.071 4.071 21 C -0.110 4.110 22 C -0.032 4.032 23 N -0.142 5.142 24 C -0.093 4.093 25 C -0.103 4.103 26 N -0.131 5.131 27 C -0.054 4.054 28 C -0.102 4.102 29 C -0.012 4.012 30 H 0.065 0.935 31 H 0.217 0.783 32 H 0.036 0.964 33 H 0.037 0.963 34 H 0.085 0.915 35 H 0.088 0.912 36 H 0.105 0.895 37 H 0.101 0.899 38 H 0.098 0.902 39 H 0.098 0.902 40 H 0.168 0.832 41 H 0.164 0.836 42 H 0.194 0.806 43 H 0.195 0.805 44 H 0.198 0.802 45 H 0.105 0.895 46 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 3.386 -32.912 -3.229 33.243 hybrid contribution 0.067 0.655 0.020 0.659 sum 3.453 -32.258 -3.209 32.600 Atomic orbital electron populations 1.69650 1.05104 1.25728 1.57867 1.24745 0.95546 0.97709 1.03079 0.86255 0.78512 0.83485 0.77878 1.21250 1.21683 1.21280 1.19205 0.91042 0.84225 1.42606 0.91232 1.42352 1.05848 1.00066 1.89539 1.20688 0.93562 0.85581 0.97883 1.21686 0.98573 0.92364 1.02649 1.22361 0.96847 0.95021 0.97155 0.89492 1.22806 0.98228 0.94115 1.01679 1.22602 0.89420 0.96455 0.95226 1.48418 1.28126 1.08620 1.49117 1.17770 0.81191 0.86498 0.78712 1.90822 1.34354 1.66754 1.48488 1.20046 0.97660 0.93559 0.99450 1.21039 0.96632 0.94175 0.95215 1.20722 0.98040 0.92686 0.99513 1.19743 0.96213 0.90867 0.96410 1.68744 1.20328 1.05326 1.19823 1.24178 0.90926 1.01944 0.92205 1.24120 0.98205 0.91508 0.96431 1.68668 1.19055 1.06592 1.18816 1.19471 0.94476 0.95029 0.96463 1.22917 0.97888 0.91335 0.98095 1.22504 1.01939 0.78726 0.98061 0.93504 0.78327 0.96422 0.96252 0.91512 0.91181 0.89500 0.89876 0.90231 0.90189 0.83214 0.83561 0.80599 0.80513 0.80208 0.89527 0.90494 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.47 13.06 55.49 0.72 -27.75 16 2 C -0.01 -0.44 5.50 -17.43 -0.10 -0.53 16 3 Si 0.91 22.71 29.55 -169.99 -5.02 17.69 16 4 H -0.29 -7.06 7.11 56.52 0.40 -6.65 16 5 H -0.29 -7.29 7.11 56.52 0.40 -6.89 16 6 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 7 C -0.24 -6.82 9.99 -15.06 -0.15 -6.97 16 8 H 0.07 1.93 7.83 -52.49 -0.41 1.52 16 9 N -0.73 -18.72 5.60 -59.91 -0.34 -19.05 16 10 C 0.15 2.96 6.11 -4.04 -0.02 2.94 16 11 C -0.11 -1.68 4.84 -26.73 -0.13 -1.81 16 12 C -0.09 -1.08 3.08 -88.46 -0.27 -1.35 16 13 H 0.09 0.99 8.14 -51.93 -0.42 0.57 16 14 C -0.13 -1.10 6.42 -24.89 -0.16 -1.26 16 15 C 0.09 0.70 4.86 -3.06 -0.01 0.69 16 16 N -0.61 -7.01 3.33 -178.38 -0.59 -7.61 16 17 C 0.57 7.37 7.81 -12.32 -0.10 7.27 16 18 O -0.53 -8.61 16.56 5.32 0.09 -8.53 16 19 C -0.10 -1.08 5.87 -104.99 -0.62 -1.69 16 20 C -0.05 -0.48 9.49 -39.58 -0.38 -0.85 16 21 C -0.09 -0.79 9.95 -39.55 -0.39 -1.18 16 22 C 0.09 0.89 6.59 -84.73 -0.56 0.33 16 23 N -0.43 -3.75 10.46 -10.74 -0.11 -3.87 16 24 C 0.08 0.46 11.22 -17.20 -0.19 0.27 16 25 C 0.07 0.40 11.22 -17.22 -0.19 0.21 16 26 N -0.42 -3.63 10.46 -10.81 -0.11 -3.74 16 27 C 0.07 0.67 6.58 -84.82 -0.56 0.12 16 28 C -0.08 -0.78 8.59 -38.69 -0.33 -1.11 16 29 C 0.11 1.39 5.59 -2.53 -0.01 1.37 16 30 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 31 H 0.38 10.17 7.67 -40.82 -0.31 9.86 16 32 H 0.02 0.36 8.14 -51.93 -0.42 -0.07 16 33 H 0.02 0.39 7.46 -51.93 -0.39 0.01 16 34 H 0.07 0.99 8.10 -51.93 -0.42 0.57 16 35 H 0.07 1.03 8.14 -51.93 -0.42 0.60 16 36 H 0.09 0.61 8.14 -51.93 -0.42 0.18 16 37 H 0.08 0.69 8.04 -51.93 -0.42 0.27 16 38 H 0.08 0.57 6.75 -51.93 -0.35 0.22 16 39 H 0.08 0.56 6.72 -51.93 -0.35 0.21 16 40 H 0.15 1.33 7.63 -52.49 -0.40 0.93 16 41 H 0.15 0.99 8.06 -52.49 -0.42 0.57 16 42 H 0.18 0.26 8.06 -52.49 -0.42 -0.16 16 43 H 0.18 0.27 8.06 -52.49 -0.42 -0.15 16 44 H 0.18 1.42 2.67 -61.18 -0.16 1.26 16 45 H 0.09 1.24 7.91 -51.93 -0.41 0.83 16 46 H 0.08 1.02 8.00 -51.93 -0.42 0.60 16 LS Contribution 377.87 15.07 5.69 5.69 Total: -1.00 -35.92 377.87 -9.98 -45.90 By element: Atomic # 1 Polarization: 10.96 SS G_CDS: -6.13 Total: 4.82 kcal Atomic # 6 Polarization: 0.61 SS G_CDS: -4.18 Total: -3.57 kcal Atomic # 7 Polarization: -61.58 SS G_CDS: -0.43 Total: -62.01 kcal Atomic # 8 Polarization: -8.61 SS G_CDS: 0.09 Total: -8.53 kcal Atomic # 14 Polarization: 22.71 SS G_CDS: -5.02 Total: 17.69 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -35.92 -9.98 -45.90 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001272632743.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.702 kcal (2) G-P(sol) polarization free energy of solvation -35.916 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 80.786 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.982 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.898 kcal (6) G-S(sol) free energy of system = (1) + (5) 70.804 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds