Wall clock time and date at job start Sat Apr 11 2020 06:05:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86798 * 120.00127 * 2 1 4 4 H 1.48501 * 109.47083 * 239.99973 * 3 2 1 5 5 H 1.48494 * 109.47517 * 0.02562 * 3 2 1 6 6 H 1.48502 * 109.46906 * 120.00669 * 3 2 1 7 7 C 1.38820 * 119.99678 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99635 * 180.02562 * 7 2 1 9 9 N 1.36934 * 119.99728 * 359.97438 * 7 2 1 10 10 C 1.46507 * 119.99590 * 180.02562 * 9 7 2 11 11 C 1.52995 * 109.46926 * 180.02562 * 10 9 7 12 12 C 1.53007 * 109.47024 * 180.02562 * 11 10 9 13 13 H 1.09000 * 110.88645 * 57.42721 * 12 11 10 14 14 C 1.55163 * 111.00260 * 181.34941 * 12 11 10 15 15 C 1.54333 * 103.01847 * 153.38132 * 14 12 11 16 16 N 1.47024 * 107.26368 * 338.13944 * 15 14 12 17 17 C 1.34777 * 125.64502 * 178.85642 * 16 15 14 18 18 O 1.21552 * 119.99891 * 185.53236 * 17 16 15 19 19 C 1.47868 * 120.00226 * 5.52321 * 17 16 15 20 20 C 1.40621 * 119.75520 * 172.87669 * 19 17 16 21 21 C 1.35728 * 120.83230 * 180.02562 * 20 19 17 22 22 C 1.40707 * 120.08478 * 0.02562 * 21 20 19 23 23 N 1.33793 * 120.85202 * 179.97438 * 22 21 20 24 24 C 1.31333 * 119.76018 * 179.97438 * 23 22 21 25 25 C 1.39757 * 120.70800 * 359.97438 * 24 23 22 26 26 N 1.31281 * 120.67579 * 0.02562 * 25 24 23 27 27 C 1.33813 * 119.73695 * 359.97438 * 26 25 24 28 28 C 1.38415 * 119.75336 * 352.90164 * 19 17 16 29 29 C 1.47420 * 108.70638 * 358.58399 * 16 15 14 30 30 H 0.97003 * 119.99684 * 359.97438 * 1 2 3 31 31 H 0.97002 * 120.00728 * 0.02562 * 9 7 2 32 32 H 1.09003 * 109.46951 * 60.00398 * 10 9 7 33 33 H 1.08997 * 109.47180 * 300.00461 * 10 9 7 34 34 H 1.08993 * 109.47693 * 59.99761 * 11 10 9 35 35 H 1.09006 * 109.47280 * 300.00069 * 11 10 9 36 36 H 1.09007 * 110.71547 * 271.93765 * 14 12 11 37 37 H 1.08994 * 110.72337 * 35.03143 * 14 12 11 38 38 H 1.08995 * 109.98747 * 218.66483 * 15 14 12 39 39 H 1.08999 * 109.77845 * 97.49549 * 15 14 12 40 40 H 1.08001 * 119.58262 * 0.05094 * 20 19 17 41 41 H 1.07998 * 119.95305 * 179.72733 * 21 20 19 42 42 H 1.07999 * 119.64468 * 180.02562 * 24 23 22 43 43 H 1.07995 * 119.66079 * 179.97438 * 25 24 23 44 44 H 1.08004 * 120.24918 * 359.97438 * 28 19 17 45 45 H 1.09004 * 110.36788 * 143.19270 * 29 16 15 46 46 H 1.08996 * 110.36908 * 265.52367 * 29 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1040 1.6963 -1.2125 5 1 1.2853 2.7465 0.0006 6 1 3.1041 1.6962 1.2124 7 6 2.0102 -1.2023 -0.0005 8 1 3.0902 -1.2022 -0.0001 9 7 1.3254 -2.3881 -0.0005 10 6 2.0579 -3.6569 -0.0005 11 6 1.0636 -4.8197 -0.0012 12 6 1.8286 -6.1448 -0.0005 13 1 2.4971 -6.2072 0.8581 14 6 0.8525 -7.3504 -0.0353 15 6 1.6926 -8.4588 -0.7044 16 7 2.7633 -7.7964 -1.4636 17 6 3.7246 -8.4201 -2.1731 18 8 4.6206 -7.7746 -2.6810 19 6 3.6895 -9.8896 -2.3333 20 6 4.6046 -10.5197 -3.1953 21 6 4.5915 -11.8670 -3.3592 22 6 3.6546 -12.6531 -2.6634 23 7 3.6277 -13.9823 -2.8139 24 6 2.7444 -14.6953 -2.1535 25 6 1.8305 -14.0808 -1.2931 26 7 1.8369 -12.7784 -1.1286 27 6 2.7273 -12.0302 -1.7904 28 6 2.7558 -10.6347 -1.6342 29 6 2.6074 -6.3369 -1.3258 30 1 -0.4850 0.8401 0.0004 31 1 0.3554 -2.3881 -0.0005 32 1 2.6845 -3.7146 0.8895 33 1 2.6846 -3.7146 -0.8904 34 1 0.4373 -4.7618 -0.8913 35 1 0.4366 -4.7621 0.8886 36 1 0.5616 -7.6403 0.9745 37 1 -0.0264 -7.1179 -0.6365 38 1 1.0676 -9.0442 -1.3787 39 1 2.1250 -9.1055 0.0590 40 1 5.3272 -9.9241 -3.7334 41 1 5.2980 -12.3357 -4.0283 42 1 2.7246 -15.7682 -2.2760 43 1 1.1111 -14.6835 -0.7587 44 1 2.0548 -10.1467 -0.9731 45 1 3.5833 -5.8551 -1.2654 46 1 2.0363 -5.9356 -2.1629 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001272632743.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:05:33 Heat of formation + Delta-G solvation = 45.874508 kcal Electronic energy + Delta-G solvation = -27928.172061 eV Core-core repulsion = 24010.967647 eV Total energy + Delta-G solvation = -3917.204414 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -42.56961 -41.40521 -39.18019 -38.06181 -36.92644 -35.91180 -34.69034 -32.95704 -31.95723 -31.81057 -30.81459 -28.59491 -27.06184 -26.03168 -25.27629 -24.72905 -23.46692 -22.62671 -21.69309 -21.16917 -19.81513 -19.15827 -19.02310 -18.12333 -17.67009 -17.24326 -16.65946 -16.63393 -16.23970 -16.04553 -15.75943 -15.33684 -15.26444 -15.21353 -15.03991 -14.77195 -14.44945 -14.11396 -14.00610 -13.67976 -13.26036 -13.06629 -13.00178 -12.91988 -12.83793 -12.79855 -12.74776 -12.62497 -12.28894 -12.16953 -11.93888 -11.68193 -11.57683 -11.36758 -11.24912 -10.92351 -10.15597 -10.14065 -9.80844 -9.77132 -9.00598 -7.96507 -5.25148 -1.06587 -0.64908 0.68536 1.21570 1.46127 1.49226 1.55461 1.72101 2.08005 2.55158 2.86596 2.91389 3.05447 3.15483 3.26437 3.36763 3.50428 3.60001 3.74901 3.79149 3.90523 3.96721 4.11759 4.12350 4.18391 4.29588 4.42737 4.43357 4.49649 4.54461 4.57294 4.66420 4.75535 4.79587 4.84931 4.89350 4.91991 4.98781 5.11787 5.13443 5.15347 5.26412 5.38239 5.45981 5.48842 5.49198 6.18268 6.26557 6.29057 6.64608 6.87516 7.32625 8.09264 8.32745 9.26649 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.028624 B = 0.001831 C = 0.001736 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 977.955754 B =15286.115904 C =16128.000190 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.967 5.967 2 C -0.075 4.075 3 Si 0.973 3.027 4 H -0.280 1.280 5 H -0.292 1.292 6 H -0.277 1.277 7 C -0.251 4.251 8 H 0.071 0.929 9 N -0.747 5.747 10 C 0.147 3.853 11 C -0.099 4.099 12 C -0.085 4.085 13 H 0.091 0.909 14 C -0.120 4.120 15 C 0.082 3.918 16 N -0.609 5.609 17 C 0.565 3.435 18 O -0.575 6.575 19 C -0.119 4.119 20 C -0.061 4.061 21 C -0.088 4.088 22 C 0.074 3.926 23 N -0.456 5.456 24 C 0.097 3.903 25 C 0.086 3.914 26 N -0.439 5.439 27 C 0.050 3.950 28 C -0.073 4.073 29 C 0.107 3.893 30 H 0.252 0.748 31 H 0.375 0.625 32 H 0.018 0.982 33 H 0.013 0.987 34 H 0.065 0.935 35 H 0.076 0.924 36 H 0.113 0.887 37 H 0.089 0.911 38 H 0.097 0.903 39 H 0.100 0.900 40 H 0.146 0.854 41 H 0.160 0.840 42 H 0.221 0.779 43 H 0.222 0.778 44 H 0.195 0.805 45 H 0.061 0.939 46 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.638 -36.804 -1.811 36.885 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.618 5.618 2 C -0.267 4.267 3 Si 0.802 3.198 4 H -0.206 1.206 5 H -0.218 1.218 6 H -0.203 1.203 7 C -0.383 4.383 8 H 0.089 0.911 9 N -0.390 5.390 10 C 0.021 3.979 11 C -0.138 4.138 12 C -0.105 4.105 13 H 0.110 0.890 14 C -0.157 4.157 15 C -0.039 4.039 16 N -0.340 5.340 17 C 0.356 3.644 18 O -0.456 6.456 19 C -0.124 4.124 20 C -0.082 4.082 21 C -0.107 4.107 22 C -0.048 4.048 23 N -0.170 5.170 24 C -0.079 4.079 25 C -0.091 4.091 26 N -0.153 5.153 27 C -0.072 4.072 28 C -0.092 4.092 29 C -0.015 4.015 30 H 0.061 0.939 31 H 0.207 0.793 32 H 0.036 0.964 33 H 0.031 0.969 34 H 0.083 0.917 35 H 0.094 0.906 36 H 0.131 0.869 37 H 0.107 0.893 38 H 0.115 0.885 39 H 0.117 0.883 40 H 0.163 0.837 41 H 0.178 0.822 42 H 0.237 0.763 43 H 0.239 0.761 44 H 0.211 0.789 45 H 0.080 0.920 46 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 2.426 -36.138 -2.179 36.285 hybrid contribution 0.325 1.390 -0.279 1.455 sum 2.751 -34.748 -2.457 34.943 Atomic orbital electron populations 1.69799 1.06476 1.26205 1.59294 1.25570 0.96483 1.01073 1.03572 0.85216 0.77262 0.79178 0.78142 1.20637 1.21775 1.20346 1.19600 0.91429 0.85642 1.41593 0.91071 1.42575 1.05703 1.01264 1.89444 1.20877 0.94482 0.85299 0.97287 1.21519 0.97511 0.91889 1.02834 1.22218 0.97281 0.94640 0.96318 0.89047 1.22813 0.97392 0.92120 1.03389 1.22859 0.88736 0.96632 0.95690 1.48475 1.28501 1.08198 1.48857 1.18194 0.80693 0.87472 0.78066 1.90782 1.36319 1.67928 1.50603 1.19852 0.99282 0.92014 1.01215 1.21029 0.96843 0.94634 0.95650 1.20854 0.98174 0.92249 0.99471 1.19910 0.96498 0.91678 0.96736 1.68798 1.21984 1.04926 1.21308 1.25016 0.89036 1.03736 0.90134 1.24950 0.98056 0.90770 0.95340 1.68712 1.19186 1.08047 1.19385 1.19554 0.95239 0.95253 0.97204 1.23001 0.97273 0.91487 0.97464 1.22389 1.00692 0.79724 0.98684 0.93903 0.79270 0.96446 0.96861 0.91674 0.90565 0.86897 0.89278 0.88496 0.88259 0.83675 0.82196 0.76285 0.76145 0.78920 0.92040 0.91381 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -59.73 13.06 21.65 0.28 -59.45 16 2 C -0.07 -4.37 5.50 84.86 0.47 -3.91 16 3 Si 0.97 47.06 29.55 68.60 2.03 49.09 16 4 H -0.28 -13.17 7.11 99.48 0.71 -12.46 16 5 H -0.29 -14.03 7.11 99.48 0.71 -13.33 16 6 H -0.28 -12.91 7.11 99.48 0.71 -12.20 16 7 C -0.25 -14.46 9.99 84.04 0.84 -13.62 16 8 H 0.07 3.98 7.83 -2.91 -0.02 3.96 16 9 N -0.75 -38.75 5.60 -343.44 -1.92 -40.68 16 10 C 0.15 5.88 6.11 86.38 0.53 6.41 16 11 C -0.10 -2.87 4.84 30.60 0.15 -2.72 16 12 C -0.08 -1.86 3.08 -9.40 -0.03 -1.89 16 13 H 0.09 1.97 8.14 -2.39 -0.02 1.95 16 14 C -0.12 -1.71 6.42 31.79 0.20 -1.50 16 15 C 0.08 1.18 4.86 86.73 0.42 1.61 16 16 N -0.61 -14.07 3.33 -836.53 -2.78 -16.85 16 17 C 0.57 15.35 7.81 86.79 0.68 16.03 16 18 O -0.58 -20.29 16.56 -3.88 -0.06 -20.36 16 19 C -0.12 -2.58 5.87 -20.10 -0.12 -2.70 16 20 C -0.06 -1.23 9.49 22.27 0.21 -1.02 16 21 C -0.09 -1.56 9.95 22.29 0.22 -1.33 16 22 C 0.07 1.37 6.59 40.32 0.27 1.64 16 23 N -0.46 -7.02 10.46 -187.88 -1.96 -8.99 16 24 C 0.10 0.70 11.22 85.13 0.95 1.65 16 25 C 0.09 0.59 11.22 85.14 0.95 1.55 16 26 N -0.44 -6.40 10.46 -188.12 -1.97 -8.36 16 27 C 0.05 0.90 6.58 40.26 0.27 1.16 16 28 C -0.07 -1.31 8.59 22.85 0.20 -1.12 16 29 C 0.11 2.81 5.59 86.86 0.49 3.30 16 30 H 0.25 15.07 8.31 -92.71 -0.77 14.30 16 31 H 0.38 20.32 7.67 -92.71 -0.71 19.61 16 32 H 0.02 0.71 8.14 -2.39 -0.02 0.69 16 33 H 0.01 0.56 7.46 -2.39 -0.02 0.54 16 34 H 0.06 1.91 8.10 -2.39 -0.02 1.89 16 35 H 0.08 2.14 8.14 -2.38 -0.02 2.12 16 36 H 0.11 1.11 8.14 -2.38 -0.02 1.09 16 37 H 0.09 1.22 8.04 -2.39 -0.02 1.20 16 38 H 0.10 1.14 6.75 -2.39 -0.02 1.12 16 39 H 0.10 1.12 6.72 -2.39 -0.02 1.10 16 40 H 0.15 2.91 7.63 -2.91 -0.02 2.89 16 41 H 0.16 2.18 8.06 -2.91 -0.02 2.15 16 42 H 0.22 -0.52 8.06 -2.91 -0.02 -0.55 16 43 H 0.22 -0.58 8.06 -2.91 -0.02 -0.61 16 44 H 0.19 2.68 2.67 -11.08 -0.03 2.65 16 45 H 0.06 1.90 7.91 -2.39 -0.02 1.88 16 46 H 0.07 1.88 8.00 -2.39 -0.02 1.86 16 Total: -1.00 -80.79 377.87 0.59 -80.20 By element: Atomic # 1 Polarization: 21.58 SS G_CDS: 0.29 Total: 21.87 kcal Atomic # 6 Polarization: -3.16 SS G_CDS: 6.69 Total: 3.53 kcal Atomic # 7 Polarization: -125.97 SS G_CDS: -8.35 Total: -134.33 kcal Atomic # 8 Polarization: -20.29 SS G_CDS: -0.06 Total: -20.36 kcal Atomic # 14 Polarization: 47.06 SS G_CDS: 2.03 Total: 49.09 kcal Total: -80.79 0.59 -80.20 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001272632743.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 126.072 kcal (2) G-P(sol) polarization free energy of solvation -80.790 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.282 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.593 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.198 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.875 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds