Wall clock time and date at job start Sat Apr 11 2020 06:05:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 C 1.42900 * 113.99950 * 2 1 4 4 C 1.52993 * 109.46885 * 179.97438 * 3 2 1 5 5 N 1.46904 * 109.47338 * 64.99780 * 4 3 2 6 6 C 1.48197 * 111.00303 * 189.99596 * 5 4 3 7 7 C 1.52718 * 85.77742 * 223.21778 * 6 5 4 8 8 C 1.48201 * 111.00152 * 90.34375 * 5 4 3 9 9 S 1.82613 * 115.06594 * 266.42819 * 7 6 5 10 10 C 1.84162 * 95.58741 * 210.33947 * 9 7 6 11 11 C 1.55259 * 100.99516 * 34.80204 * 10 9 7 12 12 C 1.52591 * 116.52608 * 141.60280 * 7 6 5 13 13 H 1.08999 * 108.85510 * 5.86228 * 12 7 6 14 14 C 1.50693 * 108.96357 * 247.18464 * 12 7 6 15 15 O 1.21287 * 120.00256 * 285.56207 * 14 12 7 16 16 N 1.34780 * 120.00223 * 105.55606 * 14 12 7 17 17 C 1.47586 * 134.49383 * 179.97438 * 16 14 12 18 18 C 1.53946 * 86.11357 * 155.36776 * 17 16 14 19 19 C 1.50698 * 113.74145 * 137.95568 * 18 17 16 20 20 H 1.07999 * 119.99981 * 359.97438 * 19 18 17 21 21 C 1.37875 * 120.00268 * 179.97438 * 19 18 17 22 22 N 1.31517 * 119.99833 * 0.02562 * 21 19 18 23 23 Si 1.86800 * 120.00454 * 179.97438 * 21 19 18 24 24 H 1.48502 * 109.47144 * 270.00742 * 23 21 19 25 25 H 1.48491 * 109.47277 * 150.00129 * 23 21 19 26 26 H 1.48502 * 109.46704 * 30.00609 * 23 21 19 27 27 C 1.47578 * 134.49050 * 0.02562 * 16 14 12 28 28 H 1.08993 * 109.46724 * 60.00427 * 1 2 3 29 29 H 1.08997 * 109.47129 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.47168 * 300.00396 * 1 2 3 31 31 H 1.09001 * 109.47351 * 59.99514 * 3 2 1 32 32 H 1.09001 * 109.46513 * 299.99720 * 3 2 1 33 33 H 1.08997 * 109.47770 * 304.99426 * 4 3 2 34 34 H 1.09005 * 109.47027 * 184.99494 * 4 3 2 35 35 H 1.09005 * 113.82520 * 108.99884 * 6 5 4 36 36 H 1.09007 * 113.82509 * 337.43027 * 6 5 4 37 37 H 1.09003 * 113.82426 * 22.57218 * 8 5 4 38 38 H 1.08995 * 113.82391 * 250.99897 * 8 5 4 39 39 H 1.09000 * 111.11526 * 276.86891 * 10 9 7 40 40 H 1.08999 * 111.15242 * 152.74547 * 10 9 7 41 41 H 1.09002 * 109.58954 * 199.08466 * 11 10 9 42 42 H 1.08992 * 109.59434 * 78.98106 * 11 10 9 43 43 H 1.08995 * 113.76567 * 41.06541 * 17 16 14 44 44 H 1.09001 * 113.87243 * 269.68164 * 17 16 14 45 45 H 1.09005 * 113.74065 * 269.15650 * 18 17 16 46 46 H 0.97003 * 119.99883 * 359.97438 * 22 21 19 47 47 H 1.09002 * 113.76911 * 90.33616 * 27 16 14 48 48 H 1.08991 * 113.77028 * 318.94165 * 27 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5354 1.1846 0.0006 5 7 3.9779 0.5621 -1.2543 6 6 5.4162 0.2101 -1.1943 7 6 5.4974 0.7741 -2.6112 8 6 4.2451 1.5875 -2.2904 9 16 5.2992 -0.4561 -3.9461 10 6 6.3677 0.4237 -5.1609 11 6 7.4407 1.0375 -4.2215 12 6 6.7539 1.5676 -2.9579 13 1 7.4516 1.5050 -2.1228 14 6 6.3777 3.0107 -3.1736 15 8 5.8037 3.3425 -4.1893 16 7 6.6790 3.9329 -2.2380 17 6 6.4713 5.3890 -2.1162 18 6 6.5526 5.1676 -0.5949 19 6 7.3575 6.2162 0.1286 20 1 7.8121 7.0249 -0.4244 21 6 7.5137 6.1432 1.4965 22 7 6.9606 5.1581 2.1699 23 14 8.5121 7.4425 2.3934 24 1 9.9335 7.0176 2.4578 25 1 7.9827 7.6104 3.7705 26 1 8.4136 8.7327 1.6646 27 6 7.3500 3.8922 -0.9242 28 1 -0.3632 0.5137 -0.8900 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 1.6886 1.8464 0.8899 32 1 1.6886 1.8463 -0.8901 33 1 3.8508 0.5686 0.8427 34 1 3.9785 2.1765 0.0901 35 1 5.6051 -0.8618 -1.1355 36 1 5.9798 0.7844 -0.4589 37 1 4.4549 2.5778 -1.8861 38 1 3.5107 1.6014 -3.0957 39 1 5.8107 1.2022 -5.6823 40 1 6.8172 -0.2742 -5.8673 41 1 7.9485 1.8558 -4.7322 42 1 8.1682 0.2731 -3.9489 43 1 5.4924 5.7233 -2.4599 44 1 7.2898 5.9864 -2.5176 45 1 5.5869 4.9754 -0.1272 46 1 6.4425 4.4832 1.7042 47 1 8.4274 4.0490 -0.9761 48 1 7.0730 3.0313 -0.3159 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001276897230.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:05:41 Heat of formation + Delta-G solvation = -7.751740 kcal Electronic energy + Delta-G solvation = -29019.993658 eV Core-core repulsion = 25203.615035 eV Total energy + Delta-G solvation = -3816.378623 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.88904 -39.24724 -37.78751 -37.33091 -34.85123 -33.00142 -31.73910 -29.68802 -28.10864 -26.63580 -26.43847 -25.53354 -25.29189 -24.53771 -22.65902 -21.50137 -20.64867 -19.88271 -18.24176 -17.39867 -16.83435 -16.72701 -16.50569 -16.08219 -15.79778 -15.34232 -15.05603 -14.70082 -14.63399 -14.49885 -14.21978 -13.89574 -13.58970 -13.31916 -12.96836 -12.76068 -12.51834 -12.32133 -12.14086 -11.95123 -11.86284 -11.70243 -11.60281 -11.52894 -11.32726 -11.13142 -11.07203 -10.84083 -10.77621 -10.67916 -10.26621 -9.92258 -9.81004 -9.64240 -9.43867 -8.82275 -8.73559 -8.64183 -8.12944 -7.64890 -6.62465 -4.36573 1.78042 2.27752 2.88939 3.21975 3.30797 3.34295 3.49424 3.73076 3.80479 4.12911 4.31567 4.34782 4.63041 4.77264 4.84673 4.91504 5.03552 5.07402 5.10395 5.20292 5.25081 5.27936 5.35225 5.42500 5.44930 5.50333 5.51514 5.54783 5.59721 5.70717 5.72691 5.76439 5.79024 5.86663 5.91225 5.94239 6.01089 6.10305 6.23703 6.27355 6.27913 6.46487 6.89822 7.12419 7.20748 7.85065 8.16518 8.20847 8.46894 8.59436 9.36090 10.76582 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.009214 B = 0.004207 C = 0.003148 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3038.275956 B = 6653.453129 C = 8892.086570 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.376 6.376 3 C 0.073 3.927 4 C 0.018 3.982 5 N -0.460 5.460 6 C 0.028 3.972 7 C -0.030 4.030 8 C 0.023 3.977 9 S -0.226 6.226 10 C -0.076 4.076 11 C -0.104 4.104 12 C -0.103 4.103 13 H 0.100 0.900 14 C 0.532 3.468 15 O -0.553 6.553 16 N -0.639 5.639 17 C 0.112 3.888 18 C 0.016 3.984 19 C -0.597 4.597 20 H 0.057 0.943 21 C 0.027 3.973 22 N -0.901 5.901 23 Si 1.070 2.930 24 H -0.286 1.286 25 H -0.283 1.283 26 H -0.287 1.287 27 C 0.094 3.906 28 H 0.038 0.962 29 H 0.082 0.918 30 H 0.036 0.964 31 H 0.052 0.948 32 H 0.048 0.952 33 H 0.085 0.915 34 H 0.065 0.935 35 H 0.102 0.898 36 H 0.083 0.917 37 H 0.080 0.920 38 H 0.099 0.901 39 H 0.099 0.901 40 H 0.104 0.896 41 H 0.082 0.918 42 H 0.084 0.916 43 H 0.061 0.939 44 H 0.077 0.923 45 H 0.053 0.947 46 H 0.269 0.731 47 H 0.081 0.919 48 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.616 -9.528 -6.494 12.084 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.295 6.295 3 C -0.004 4.004 4 C -0.110 4.110 5 N -0.182 5.182 6 C -0.102 4.102 7 C -0.141 4.141 8 C -0.108 4.108 9 S 0.004 5.996 10 C -0.224 4.224 11 C -0.143 4.143 12 C -0.127 4.127 13 H 0.118 0.882 14 C 0.321 3.679 15 O -0.432 6.432 16 N -0.372 5.372 17 C -0.010 4.010 18 C -0.003 4.003 19 C -0.635 4.635 20 H 0.075 0.925 21 C -0.179 4.179 22 N -0.536 5.536 23 Si 0.898 3.102 24 H -0.213 1.213 25 H -0.209 1.209 26 H -0.213 1.213 27 C -0.029 4.029 28 H 0.056 0.944 29 H 0.101 0.899 30 H 0.055 0.945 31 H 0.070 0.930 32 H 0.066 0.934 33 H 0.103 0.897 34 H 0.083 0.917 35 H 0.121 0.879 36 H 0.101 0.899 37 H 0.098 0.902 38 H 0.117 0.883 39 H 0.118 0.882 40 H 0.122 0.878 41 H 0.101 0.899 42 H 0.103 0.897 43 H 0.080 0.920 44 H 0.095 0.905 45 H 0.071 0.929 46 H 0.079 0.921 47 H 0.099 0.901 48 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -4.460 -10.777 -5.851 13.049 hybrid contribution 0.563 1.544 -1.163 2.014 sum -3.897 -9.233 -7.014 12.232 Atomic orbital electron populations 1.22698 0.81833 1.02398 0.99590 1.87971 1.18815 1.27436 1.95264 1.22404 0.93138 0.84939 0.99913 1.22731 0.94610 0.99480 0.94213 1.68695 1.16099 1.27650 1.05762 1.23975 0.90591 1.02847 0.92797 1.24014 0.96195 0.96687 0.97203 1.24251 0.95278 0.94424 0.96846 1.87545 1.67754 1.32252 1.12038 1.24451 0.97637 1.01721 0.98611 1.22228 0.97766 1.01178 0.93105 1.21709 0.97107 0.93146 1.00722 0.88155 1.19979 0.79422 0.86465 0.82057 1.90648 1.43454 1.81642 1.27474 1.50542 1.57190 1.09541 1.19959 1.23353 1.00193 0.79266 0.98199 1.20615 0.96270 0.92838 0.90569 1.21832 1.35619 1.11460 0.94576 0.92464 1.25873 0.97110 1.00022 0.94889 1.70819 1.30803 1.12523 1.39413 0.83506 0.75889 0.74853 0.75963 1.21281 1.20862 1.21293 1.23914 0.98480 1.00856 0.79627 0.94350 0.89902 0.94495 0.92982 0.93391 0.89676 0.91658 0.87948 0.89888 0.90161 0.88254 0.88214 0.87765 0.89917 0.89746 0.92004 0.90527 0.92944 0.92078 0.90123 0.92505 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.33 11.01 101.05 1.11 1.44 16 2 O -0.38 -5.29 10.65 -35.23 -0.38 -5.67 16 3 C 0.07 0.96 6.26 37.15 0.23 1.20 16 4 C 0.02 0.25 5.18 -3.83 -0.02 0.23 16 5 N -0.46 -6.72 6.10 -244.95 -1.50 -8.21 16 6 C 0.03 0.38 7.18 -3.25 -0.02 0.36 16 7 C -0.03 -0.42 1.31 -91.25 -0.12 -0.54 16 8 C 0.02 0.35 6.28 -3.24 -0.02 0.33 16 9 S -0.23 -3.17 22.56 -107.50 -2.43 -5.59 16 10 C -0.08 -0.93 7.33 38.35 0.28 -0.65 16 11 C -0.10 -1.27 5.61 -25.39 -0.14 -1.41 16 12 C -0.10 -1.47 2.81 -91.84 -0.26 -1.73 16 13 H 0.10 1.36 7.12 -51.93 -0.37 0.99 16 14 C 0.53 9.31 4.56 -10.99 -0.05 9.26 16 15 O -0.55 -11.09 16.68 5.55 0.09 -11.00 16 16 N -0.64 -11.66 3.51 -178.42 -0.63 -12.28 16 17 C 0.11 2.17 8.39 -2.97 -0.02 2.15 16 18 C 0.02 0.35 3.10 -90.83 -0.28 0.07 16 19 C -0.60 -14.57 8.77 -34.44 -0.30 -14.88 16 20 H 0.06 1.40 7.81 -52.49 -0.41 0.99 16 21 C 0.03 0.68 5.46 -17.82 -0.10 0.58 16 22 N -0.90 -24.00 13.65 55.43 0.76 -23.25 16 23 Si 1.07 22.67 29.90 -169.99 -5.08 17.59 16 24 H -0.29 -5.88 7.11 56.52 0.40 -5.48 16 25 H -0.28 -6.07 7.11 56.52 0.40 -5.67 16 26 H -0.29 -5.84 7.11 56.52 0.40 -5.44 16 27 C 0.09 1.77 7.63 -2.96 -0.02 1.75 16 28 H 0.04 0.38 8.14 -51.93 -0.42 -0.05 16 29 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 30 H 0.04 0.34 8.14 -51.93 -0.42 -0.09 16 31 H 0.05 0.62 8.14 -51.93 -0.42 0.19 16 32 H 0.05 0.64 8.14 -51.93 -0.42 0.21 16 33 H 0.08 1.14 8.08 -51.93 -0.42 0.72 16 34 H 0.07 0.94 7.39 -51.93 -0.38 0.55 16 35 H 0.10 1.31 8.11 -51.93 -0.42 0.89 16 36 H 0.08 1.08 7.86 -51.93 -0.41 0.67 16 37 H 0.08 1.36 6.14 -51.93 -0.32 1.04 16 38 H 0.10 1.64 8.11 -51.93 -0.42 1.22 16 39 H 0.10 1.37 7.73 -51.93 -0.40 0.97 16 40 H 0.10 1.02 8.14 -51.93 -0.42 0.59 16 41 H 0.08 1.05 7.80 -51.93 -0.41 0.64 16 42 H 0.08 0.87 8.14 -51.93 -0.42 0.44 16 43 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 44 H 0.08 1.47 8.09 -51.93 -0.42 1.05 16 45 H 0.05 1.21 7.61 -51.93 -0.40 0.81 16 46 H 0.27 6.99 7.04 -40.82 -0.29 6.71 16 47 H 0.08 1.55 8.09 -51.93 -0.42 1.13 16 48 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 LS Contribution 395.53 15.07 5.96 5.96 Total: -1.00 -28.50 395.53 -11.01 -39.51 By element: Atomic # 1 Polarization: 12.87 SS G_CDS: -8.08 Total: 4.79 kcal Atomic # 6 Polarization: -2.11 SS G_CDS: 0.26 Total: -1.85 kcal Atomic # 7 Polarization: -42.38 SS G_CDS: -1.37 Total: -43.74 kcal Atomic # 8 Polarization: -16.39 SS G_CDS: -0.28 Total: -16.67 kcal Atomic # 14 Polarization: 22.67 SS G_CDS: -5.08 Total: 17.59 kcal Atomic # 16 Polarization: -3.17 SS G_CDS: -2.43 Total: -5.59 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -28.50 -11.01 -39.51 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001276897230.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.762 kcal (2) G-P(sol) polarization free energy of solvation -28.500 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.262 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.014 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.514 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.752 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds