Wall clock time and date at job start Sat Apr 11 2020 06:05:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 C 1.42900 * 113.99950 * 2 1 4 4 C 1.52993 * 109.46885 * 179.97438 * 3 2 1 5 5 N 1.46904 * 109.47338 * 64.99780 * 4 3 2 6 6 C 1.48197 * 111.00303 * 189.99596 * 5 4 3 7 7 C 1.52718 * 85.77742 * 223.21778 * 6 5 4 8 8 C 1.48201 * 111.00152 * 90.34375 * 5 4 3 9 9 S 1.82613 * 115.06594 * 266.42819 * 7 6 5 10 10 C 1.84162 * 95.58741 * 210.33947 * 9 7 6 11 11 C 1.55259 * 100.99516 * 34.80204 * 10 9 7 12 12 C 1.52591 * 116.52608 * 141.60280 * 7 6 5 13 13 H 1.08999 * 108.85510 * 5.86228 * 12 7 6 14 14 C 1.50693 * 108.96357 * 247.18464 * 12 7 6 15 15 O 1.21287 * 120.00256 * 285.56207 * 14 12 7 16 16 N 1.34780 * 120.00223 * 105.55606 * 14 12 7 17 17 C 1.47586 * 134.49383 * 179.97438 * 16 14 12 18 18 C 1.53946 * 86.11357 * 155.36776 * 17 16 14 19 19 C 1.50698 * 113.74145 * 137.95568 * 18 17 16 20 20 H 1.07999 * 119.99981 * 359.97438 * 19 18 17 21 21 C 1.37875 * 120.00268 * 179.97438 * 19 18 17 22 22 N 1.31517 * 119.99833 * 0.02562 * 21 19 18 23 23 Si 1.86800 * 120.00454 * 179.97438 * 21 19 18 24 24 H 1.48502 * 109.47144 * 270.00742 * 23 21 19 25 25 H 1.48491 * 109.47277 * 150.00129 * 23 21 19 26 26 H 1.48502 * 109.46704 * 30.00609 * 23 21 19 27 27 C 1.47578 * 134.49050 * 0.02562 * 16 14 12 28 28 H 1.08993 * 109.46724 * 60.00427 * 1 2 3 29 29 H 1.08997 * 109.47129 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.47168 * 300.00396 * 1 2 3 31 31 H 1.09001 * 109.47351 * 59.99514 * 3 2 1 32 32 H 1.09001 * 109.46513 * 299.99720 * 3 2 1 33 33 H 1.08997 * 109.47770 * 304.99426 * 4 3 2 34 34 H 1.09005 * 109.47027 * 184.99494 * 4 3 2 35 35 H 1.09005 * 113.82520 * 108.99884 * 6 5 4 36 36 H 1.09007 * 113.82509 * 337.43027 * 6 5 4 37 37 H 1.09003 * 113.82426 * 22.57218 * 8 5 4 38 38 H 1.08995 * 113.82391 * 250.99897 * 8 5 4 39 39 H 1.09000 * 111.11526 * 276.86891 * 10 9 7 40 40 H 1.08999 * 111.15242 * 152.74547 * 10 9 7 41 41 H 1.09002 * 109.58954 * 199.08466 * 11 10 9 42 42 H 1.08992 * 109.59434 * 78.98106 * 11 10 9 43 43 H 1.08995 * 113.76567 * 41.06541 * 17 16 14 44 44 H 1.09001 * 113.87243 * 269.68164 * 17 16 14 45 45 H 1.09005 * 113.74065 * 269.15650 * 18 17 16 46 46 H 0.97003 * 119.99883 * 359.97438 * 22 21 19 47 47 H 1.09002 * 113.76911 * 90.33616 * 27 16 14 48 48 H 1.08991 * 113.77028 * 318.94165 * 27 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5354 1.1846 0.0006 5 7 3.9779 0.5621 -1.2543 6 6 5.4162 0.2101 -1.1943 7 6 5.4974 0.7741 -2.6112 8 6 4.2451 1.5875 -2.2904 9 16 5.2992 -0.4561 -3.9461 10 6 6.3677 0.4237 -5.1609 11 6 7.4407 1.0375 -4.2215 12 6 6.7539 1.5676 -2.9579 13 1 7.4516 1.5050 -2.1228 14 6 6.3777 3.0107 -3.1736 15 8 5.8037 3.3425 -4.1893 16 7 6.6790 3.9329 -2.2380 17 6 6.4713 5.3890 -2.1162 18 6 6.5526 5.1676 -0.5949 19 6 7.3575 6.2162 0.1286 20 1 7.8121 7.0249 -0.4244 21 6 7.5137 6.1432 1.4965 22 7 6.9606 5.1581 2.1699 23 14 8.5121 7.4425 2.3934 24 1 9.9335 7.0176 2.4578 25 1 7.9827 7.6104 3.7705 26 1 8.4136 8.7327 1.6646 27 6 7.3500 3.8922 -0.9242 28 1 -0.3632 0.5137 -0.8900 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 1.6886 1.8464 0.8899 32 1 1.6886 1.8463 -0.8901 33 1 3.8508 0.5686 0.8427 34 1 3.9785 2.1765 0.0901 35 1 5.6051 -0.8618 -1.1355 36 1 5.9798 0.7844 -0.4589 37 1 4.4549 2.5778 -1.8861 38 1 3.5107 1.6014 -3.0957 39 1 5.8107 1.2022 -5.6823 40 1 6.8172 -0.2742 -5.8673 41 1 7.9485 1.8558 -4.7322 42 1 8.1682 0.2731 -3.9489 43 1 5.4924 5.7233 -2.4599 44 1 7.2898 5.9864 -2.5176 45 1 5.5869 4.9754 -0.1272 46 1 6.4425 4.4832 1.7042 47 1 8.4274 4.0490 -0.9761 48 1 7.0730 3.0313 -0.3159 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001276897230.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:05:40 Heat of formation + Delta-G solvation = -25.896143 kcal Electronic energy + Delta-G solvation = -29020.780458 eV Core-core repulsion = 25203.615035 eV Total energy + Delta-G solvation = -3817.165423 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -42.16244 -40.64213 -39.08232 -38.56623 -36.02027 -34.86697 -32.80257 -31.16736 -29.33672 -27.74717 -27.55000 -27.05234 -26.67429 -25.99414 -23.75055 -22.93675 -21.88548 -21.24577 -19.63127 -19.09093 -18.30981 -17.85677 -17.55354 -17.35359 -16.87217 -16.71929 -16.36028 -15.97793 -15.89218 -15.59455 -15.58826 -15.29079 -14.80865 -14.61134 -14.35457 -14.08168 -13.72082 -13.54367 -13.53118 -13.34669 -13.32443 -12.92928 -12.84141 -12.65640 -12.61914 -12.45894 -12.36867 -12.23560 -11.94569 -11.92206 -11.76874 -11.48991 -11.04641 -10.94241 -10.63736 -10.56370 -10.42150 -9.98194 -9.68948 -8.75471 -8.60522 -6.34432 0.68827 1.19482 1.51812 1.60881 1.66347 1.78990 1.84125 2.59028 2.60299 2.81295 2.90631 3.17240 3.19757 3.49425 3.61179 3.76693 3.84720 3.93312 4.03838 4.05017 4.14396 4.17707 4.22213 4.31311 4.34353 4.35932 4.38259 4.42479 4.47639 4.49879 4.53526 4.59578 4.61514 4.66993 4.68430 4.70727 4.74596 4.79011 4.81859 4.87826 4.96873 5.14330 5.37136 5.76515 5.99769 6.19829 6.23432 6.58852 6.74885 7.02634 7.44054 8.79998 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.009214 B = 0.004207 C = 0.003148 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3038.275956 B = 6653.453129 C = 8892.086570 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.399 6.399 3 C 0.075 3.925 4 C 0.020 3.980 5 N -0.465 5.465 6 C 0.034 3.966 7 C -0.026 4.026 8 C 0.025 3.975 9 S -0.242 6.242 10 C -0.067 4.067 11 C -0.101 4.101 12 C -0.099 4.099 13 H 0.112 0.888 14 C 0.534 3.466 15 O -0.579 6.579 16 N -0.637 5.637 17 C 0.115 3.885 18 C 0.006 3.994 19 C -0.604 4.604 20 H 0.053 0.947 21 C -0.015 4.015 22 N -0.927 5.927 23 Si 1.110 2.890 24 H -0.273 1.273 25 H -0.289 1.289 26 H -0.275 1.275 27 C 0.112 3.888 28 H 0.041 0.959 29 H 0.097 0.903 30 H 0.050 0.950 31 H 0.065 0.935 32 H 0.041 0.959 33 H 0.090 0.910 34 H 0.055 0.945 35 H 0.113 0.887 36 H 0.088 0.912 37 H 0.062 0.938 38 H 0.083 0.917 39 H 0.081 0.919 40 H 0.135 0.865 41 H 0.081 0.919 42 H 0.113 0.887 43 H 0.060 0.940 44 H 0.081 0.919 45 H 0.032 0.968 46 H 0.262 0.738 47 H 0.083 0.917 48 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.489 -10.519 -6.768 12.753 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.319 6.319 3 C -0.002 4.002 4 C -0.109 4.109 5 N -0.188 5.188 6 C -0.096 4.096 7 C -0.137 4.137 8 C -0.106 4.106 9 S -0.012 6.012 10 C -0.215 4.215 11 C -0.140 4.140 12 C -0.122 4.122 13 H 0.131 0.869 14 C 0.324 3.676 15 O -0.460 6.460 16 N -0.370 5.370 17 C -0.007 4.007 18 C -0.013 4.013 19 C -0.642 4.642 20 H 0.071 0.929 21 C -0.216 4.216 22 N -0.563 5.563 23 Si 0.934 3.066 24 H -0.199 1.199 25 H -0.215 1.215 26 H -0.200 1.200 27 C -0.011 4.011 28 H 0.059 0.941 29 H 0.115 0.885 30 H 0.068 0.932 31 H 0.083 0.917 32 H 0.059 0.941 33 H 0.109 0.891 34 H 0.073 0.927 35 H 0.131 0.869 36 H 0.106 0.894 37 H 0.080 0.920 38 H 0.101 0.899 39 H 0.099 0.901 40 H 0.153 0.847 41 H 0.099 0.901 42 H 0.132 0.868 43 H 0.078 0.922 44 H 0.099 0.901 45 H 0.050 0.950 46 H 0.072 0.928 47 H 0.101 0.899 48 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -3.336 -11.779 -6.147 13.699 hybrid contribution 0.107 1.868 -1.148 2.195 sum -3.229 -9.911 -7.295 12.723 Atomic orbital electron populations 1.22888 0.80087 1.03658 1.00379 1.87922 1.20822 1.27702 1.95420 1.22374 0.92703 0.84946 1.00161 1.22712 0.95206 0.98919 0.94042 1.68697 1.17059 1.27155 1.05864 1.24007 0.89808 1.03505 0.92279 1.23975 0.95367 0.96506 0.97896 1.24056 0.95797 0.93963 0.96766 1.87605 1.68830 1.32093 1.12663 1.24501 0.96978 1.01569 0.98475 1.22294 0.97940 1.01877 0.91929 1.21796 0.97444 0.90492 1.02480 0.86940 1.20540 0.78354 0.87506 0.81181 1.90639 1.44509 1.82295 1.28547 1.50464 1.57332 1.09127 1.20103 1.23221 1.00327 0.80445 0.96729 1.20542 0.95444 0.93915 0.91444 1.22108 1.35329 1.11876 0.94892 0.92863 1.26988 0.97573 1.00960 0.96059 1.70909 1.32304 1.13438 1.39651 0.82976 0.75368 0.73515 0.74789 1.19907 1.21455 1.20019 1.23606 0.98050 0.99648 0.79766 0.94072 0.88473 0.93167 0.91730 0.94114 0.89150 0.92690 0.86875 0.89370 0.91998 0.89890 0.90068 0.84722 0.90074 0.86831 0.92180 0.90068 0.95014 0.92835 0.89907 0.91513 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.52 11.01 113.37 1.25 1.77 16 2 O -0.40 -11.02 10.65 -148.98 -1.59 -12.60 16 3 C 0.08 1.98 6.26 71.98 0.45 2.43 16 4 C 0.02 0.55 5.18 86.30 0.45 1.00 16 5 N -0.47 -13.46 6.10 -928.88 -5.67 -19.13 16 6 C 0.03 0.87 7.18 85.96 0.62 1.49 16 7 C -0.03 -0.71 1.31 -11.06 -0.01 -0.73 16 8 C 0.03 0.79 6.28 85.97 0.54 1.33 16 9 S -0.24 -6.39 22.56 -56.49 -1.27 -7.67 16 10 C -0.07 -1.50 7.33 72.76 0.53 -0.96 16 11 C -0.10 -2.21 5.61 31.46 0.18 -2.04 16 12 C -0.10 -2.65 2.81 -11.58 -0.03 -2.68 16 13 H 0.11 2.76 7.12 -2.39 -0.02 2.74 16 14 C 0.53 18.30 4.56 87.65 0.40 18.70 16 15 O -0.58 -23.12 16.68 -3.05 -0.05 -23.17 16 16 N -0.64 -22.97 3.51 -836.78 -2.94 -25.91 16 17 C 0.12 4.49 8.39 86.48 0.73 5.21 16 18 C 0.01 0.25 3.10 -10.87 -0.03 0.22 16 19 C -0.60 -29.49 8.77 25.60 0.22 -29.26 16 20 H 0.05 2.59 7.81 -2.91 -0.02 2.57 16 21 C -0.02 -0.77 5.46 84.65 0.46 -0.31 16 22 N -0.93 -49.63 13.65 21.45 0.29 -49.33 16 23 Si 1.11 45.07 29.90 68.60 2.05 47.12 16 24 H -0.27 -10.47 7.11 99.48 0.71 -9.77 16 25 H -0.29 -11.92 7.11 99.48 0.71 -11.21 16 26 H -0.28 -10.51 7.11 99.48 0.71 -9.80 16 27 C 0.11 4.15 7.63 86.49 0.66 4.81 16 28 H 0.04 0.78 8.14 -2.39 -0.02 0.76 16 29 H 0.10 1.62 8.14 -2.39 -0.02 1.60 16 30 H 0.05 0.85 8.14 -2.39 -0.02 0.83 16 31 H 0.06 1.51 8.14 -2.39 -0.02 1.49 16 32 H 0.04 1.11 8.14 -2.39 -0.02 1.09 16 33 H 0.09 2.38 8.08 -2.39 -0.02 2.36 16 34 H 0.05 1.63 7.39 -2.38 -0.02 1.61 16 35 H 0.11 2.67 8.11 -2.38 -0.02 2.65 16 36 H 0.09 2.17 7.86 -2.38 -0.02 2.15 16 37 H 0.06 2.16 6.14 -2.39 -0.01 2.14 16 38 H 0.08 2.83 8.11 -2.39 -0.02 2.81 16 39 H 0.08 2.14 7.73 -2.39 -0.02 2.12 16 40 H 0.13 2.18 8.14 -2.39 -0.02 2.16 16 41 H 0.08 1.85 7.80 -2.39 -0.02 1.83 16 42 H 0.11 1.88 8.14 -2.39 -0.02 1.86 16 43 H 0.06 2.34 8.14 -2.39 -0.02 2.32 16 44 H 0.08 3.09 8.09 -2.39 -0.02 3.07 16 45 H 0.03 1.51 7.61 -2.38 -0.02 1.49 16 46 H 0.26 13.85 7.04 -92.71 -0.65 13.19 16 47 H 0.08 3.07 8.09 -2.39 -0.02 3.05 16 48 H 0.07 2.34 8.14 -2.39 -0.02 2.32 16 Total: -1.00 -60.55 395.53 -1.72 -62.28 By element: Atomic # 1 Polarization: 26.39 SS G_CDS: 1.05 Total: 27.44 kcal Atomic # 6 Polarization: -5.43 SS G_CDS: 6.40 Total: 0.97 kcal Atomic # 7 Polarization: -86.06 SS G_CDS: -8.32 Total: -94.37 kcal Atomic # 8 Polarization: -34.13 SS G_CDS: -1.64 Total: -35.77 kcal Atomic # 14 Polarization: 45.07 SS G_CDS: 2.05 Total: 47.12 kcal Atomic # 16 Polarization: -6.39 SS G_CDS: -1.27 Total: -7.67 kcal Total: -60.55 -1.72 -62.28 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001276897230.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.382 kcal (2) G-P(sol) polarization free energy of solvation -60.554 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.172 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.724 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.279 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.896 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds