Wall clock time and date at job start Sat Apr 11 2020 06:05:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 C 1.46494 * 120.00470 * 2 1 4 4 C 1.52999 * 109.47143 * 264.50893 * 3 2 1 5 5 H 1.09006 * 109.87078 * 304.96796 * 4 3 2 6 6 C 1.54320 * 109.88527 * 65.98248 * 4 3 2 7 7 C 1.55158 * 102.94279 * 141.61188 * 6 4 3 8 8 C 1.54916 * 101.58182 * 324.50162 * 7 6 4 9 9 N 1.47020 * 109.88706 * 183.79588 * 4 3 2 10 10 C 1.34781 * 125.64564 * 61.61179 * 9 4 3 11 11 O 1.21279 * 120.00316 * 5.01982 * 10 9 4 12 12 C 1.50701 * 119.99837 * 185.00787 * 10 9 4 13 13 S 1.81004 * 109.47144 * 180.02562 * 12 10 9 14 14 C 1.76201 * 99.99813 * 180.02562 * 13 12 10 15 15 H 1.07999 * 120.00036 * 359.97438 * 14 13 12 16 16 C 1.38802 * 119.99547 * 180.02562 * 14 13 12 17 17 N 1.31625 * 120.00125 * 359.97438 * 16 14 13 18 18 Si 1.86799 * 119.99746 * 179.97438 * 16 14 13 19 19 H 1.48502 * 109.47040 * 59.99727 * 18 16 14 20 20 H 1.48503 * 109.46915 * 179.97438 * 18 16 14 21 21 H 1.48496 * 109.47180 * 299.99736 * 18 16 14 22 22 C 1.34781 * 119.99625 * 179.97438 * 2 1 3 23 23 O 1.21283 * 119.99749 * 179.97438 * 22 2 1 24 24 C 1.50702 * 120.00319 * 0.02562 * 22 2 1 25 25 C 1.52998 * 109.47026 * 179.97438 * 24 22 2 26 26 C 1.53001 * 117.49239 * 185.00237 * 25 24 22 27 27 C 1.53002 * 60.02998 * 252.52301 * 26 25 24 28 28 H 1.09005 * 109.46979 * 269.99962 * 1 2 3 29 29 H 1.08999 * 109.47201 * 30.00031 * 1 2 3 30 30 H 1.08998 * 109.47549 * 150.00520 * 1 2 3 31 31 H 1.08998 * 109.47083 * 24.50412 * 3 2 1 32 32 H 1.08997 * 109.47447 * 144.50329 * 3 2 1 33 33 H 1.09000 * 110.72509 * 259.97718 * 6 4 3 34 34 H 1.08998 * 110.71896 * 23.07386 * 6 4 3 35 35 H 1.09004 * 111.00565 * 82.57253 * 7 6 4 36 36 H 1.09003 * 111.00685 * 206.42714 * 7 6 4 37 37 H 1.09000 * 110.36648 * 155.84614 * 8 7 6 38 38 H 1.08995 * 110.36183 * 278.05801 * 8 7 6 39 39 H 1.08995 * 109.47188 * 300.00628 * 12 10 9 40 40 H 1.09001 * 109.47010 * 60.00739 * 12 10 9 41 41 H 0.97004 * 119.99949 * 180.02562 * 17 16 14 42 42 H 1.09003 * 109.46692 * 59.99413 * 24 22 2 43 43 H 1.08996 * 109.46686 * 300.00226 * 24 22 2 44 44 H 1.08992 * 115.56278 * 330.68638 * 25 24 22 45 45 H 1.09003 * 117.49887 * 145.02679 * 26 25 24 46 46 H 1.08995 * 117.50279 * 0.02562 * 26 25 24 47 47 H 1.08997 * 117.50184 * 107.48094 * 27 26 25 48 48 H 1.09005 * 117.50073 * 252.47491 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2686 0.0000 4 6 2.5721 1.6412 -1.4359 5 1 3.1262 0.8242 -1.8981 6 6 1.2958 1.9372 -2.2513 7 6 1.7228 3.1329 -3.1433 8 6 2.6665 3.9096 -2.1914 9 7 3.3857 2.8658 -1.4387 10 6 4.5895 3.0103 -0.8501 11 8 5.1300 2.0560 -0.3325 12 6 5.2641 4.3579 -0.8354 13 16 6.8535 4.2276 0.0208 14 6 7.4069 5.8956 -0.1060 15 1 6.7946 6.6312 -0.6064 16 6 8.6304 6.2640 0.4362 17 7 9.3769 5.3674 1.0456 18 14 9.2175 8.0322 0.3011 19 1 8.2429 8.9299 0.9717 20 1 10.5438 8.1647 0.9559 21 1 9.3322 8.4076 -1.1310 22 6 2.1388 -1.1673 0.0005 23 8 3.3516 -1.1673 0.0001 24 6 1.3853 -2.4724 0.0005 25 6 2.3795 -3.6353 0.0005 26 6 1.8108 -5.0508 -0.1178 27 6 2.3797 -4.5647 1.2168 28 1 -0.3633 0.0000 1.0277 29 1 -0.3633 0.8900 -0.5138 30 1 -0.3634 -0.8900 -0.5137 31 1 1.5694 2.0509 0.4262 32 1 3.1038 1.1649 0.5967 33 1 1.0213 1.0782 -2.8635 34 1 0.4739 2.2181 -1.5928 35 1 2.2577 2.7886 -4.0284 36 1 0.8614 3.7404 -3.4209 37 1 3.3682 4.5157 -2.7643 38 1 2.0885 4.5380 -1.5140 39 1 5.4297 4.6925 -1.8594 40 1 4.6294 5.0763 -0.3165 41 1 10.2318 5.6249 1.4248 42 1 0.7589 -2.5302 -0.8897 43 1 0.7583 -2.5298 0.8902 44 1 3.3368 -3.4356 -0.4809 45 1 2.3941 -5.7824 -0.6770 46 1 0.7285 -5.1534 -0.1961 47 1 1.6717 -4.3473 2.0164 48 1 3.3371 -4.9769 1.5358 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001279777787.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:05:51 Heat of formation + Delta-G solvation = -40.603242 kcal Electronic energy + Delta-G solvation = -27506.279768 eV Core-core repulsion = 23688.476597 eV Total energy + Delta-G solvation = -3817.803171 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.50520 -39.50862 -37.49907 -37.02717 -35.54826 -32.39525 -31.85109 -31.28021 -29.46614 -28.44664 -27.28975 -25.46033 -25.21768 -22.87928 -22.61388 -21.51037 -20.88218 -19.33457 -18.89685 -17.66171 -17.20241 -16.87847 -16.50679 -15.93373 -15.88921 -15.10173 -14.81043 -14.76798 -14.48772 -14.25894 -13.97558 -13.74162 -13.56801 -13.45236 -13.22619 -12.89508 -12.64240 -12.58827 -12.50734 -12.25565 -12.19592 -11.76555 -11.68052 -11.59705 -11.40359 -11.06841 -11.01644 -11.00336 -10.81873 -10.73405 -10.59564 -10.25900 -9.80100 -9.77167 -9.26772 -9.02942 -9.00849 -8.32521 -8.17868 -6.45638 -6.17565 -3.88079 2.56690 2.65910 3.07325 3.15565 3.25577 3.29149 3.32249 3.56487 3.68717 4.23413 4.27547 4.36335 4.40372 4.43649 4.60705 4.65664 4.76907 4.84717 4.95635 5.05147 5.11156 5.13989 5.14774 5.17033 5.18963 5.27970 5.30683 5.37305 5.40859 5.48182 5.51464 5.61027 5.65218 5.66332 5.69032 5.84376 5.86803 5.93712 5.97210 6.05203 6.10738 6.18108 6.31067 6.58757 7.23363 7.62410 7.74642 8.14238 8.38515 8.65672 9.27081 10.89758 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.014744 B = 0.002499 C = 0.002206 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1898.670266 B =11203.131932 C =12691.072193 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.075 3.925 2 N -0.617 5.617 3 C 0.107 3.893 4 C 0.127 3.873 5 H 0.078 0.922 6 C -0.125 4.125 7 C -0.133 4.133 8 C 0.101 3.899 9 N -0.623 5.623 10 C 0.543 3.457 11 O -0.500 6.500 12 C -0.146 4.146 13 S -0.059 6.059 14 C -0.535 4.535 15 H 0.072 0.928 16 C 0.073 3.927 17 N -0.867 5.867 18 Si 0.918 3.082 19 H -0.274 1.274 20 H -0.283 1.283 21 H -0.274 1.274 22 C 0.507 3.493 23 O -0.513 6.513 24 C -0.106 4.106 25 C -0.142 4.142 26 C -0.181 4.181 27 C -0.178 4.178 28 H 0.056 0.944 29 H 0.074 0.926 30 H 0.071 0.929 31 H 0.077 0.923 32 H 0.098 0.902 33 H 0.077 0.923 34 H 0.075 0.925 35 H 0.076 0.924 36 H 0.083 0.917 37 H 0.079 0.921 38 H 0.067 0.933 39 H 0.087 0.913 40 H 0.088 0.912 41 H 0.269 0.731 42 H 0.095 0.905 43 H 0.092 0.908 44 H 0.120 0.880 45 H 0.095 0.905 46 H 0.093 0.907 47 H 0.092 0.908 48 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.096 -12.518 -6.276 29.616 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 N -0.353 5.353 3 C -0.017 4.017 4 C 0.022 3.978 5 H 0.096 0.904 6 C -0.163 4.163 7 C -0.171 4.171 8 C -0.022 4.022 9 N -0.361 5.361 10 C 0.332 3.668 11 O -0.373 6.373 12 C -0.296 4.296 13 S 0.168 5.832 14 C -0.684 4.684 15 H 0.090 0.910 16 C -0.136 4.136 17 N -0.502 5.502 18 Si 0.745 3.255 19 H -0.200 1.200 20 H -0.208 1.208 21 H -0.200 1.200 22 C 0.294 3.706 23 O -0.387 6.387 24 C -0.146 4.146 25 C -0.161 4.161 26 C -0.218 4.218 27 C -0.215 4.215 28 H 0.074 0.926 29 H 0.092 0.908 30 H 0.090 0.910 31 H 0.095 0.905 32 H 0.116 0.884 33 H 0.096 0.904 34 H 0.094 0.906 35 H 0.095 0.905 36 H 0.101 0.899 37 H 0.097 0.903 38 H 0.085 0.915 39 H 0.105 0.895 40 H 0.106 0.894 41 H 0.079 0.921 42 H 0.113 0.887 43 H 0.110 0.890 44 H 0.138 0.862 45 H 0.113 0.887 46 H 0.111 0.889 47 H 0.111 0.889 48 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -24.346 -13.972 -5.346 28.575 hybrid contribution -0.439 2.377 -0.690 2.513 sum -24.785 -11.596 -6.036 28.021 Atomic orbital electron populations 1.21892 0.79768 1.03261 1.01901 1.47790 1.06667 1.06023 1.74797 1.21826 0.98350 0.84229 0.97282 1.21806 0.91379 0.88709 0.95874 0.90431 1.22745 0.96546 0.98826 0.98186 1.22783 0.99358 0.96899 0.98027 1.22277 0.95058 0.91025 0.93878 1.48551 1.18906 1.12791 1.55869 1.20089 0.78831 0.90714 0.77207 1.90777 1.62265 1.40723 1.43504 1.23514 1.04591 0.95978 1.05547 1.85470 1.11486 1.14434 1.71853 1.22820 1.07455 0.94865 1.43234 0.91030 1.24992 0.95538 0.98503 0.94567 1.70013 1.11899 1.33705 1.34622 0.86231 0.77939 0.82881 0.78478 1.19963 1.20821 1.19954 1.20663 0.88335 0.85163 0.76436 1.90828 1.13665 1.86850 1.47310 1.21236 0.98070 0.91405 1.03854 1.22108 1.01118 0.89431 1.03436 1.22989 1.00725 0.97120 1.00961 1.23037 1.02935 1.03970 0.91512 0.92589 0.90783 0.90999 0.90502 0.88418 0.90440 0.90637 0.90549 0.89890 0.90301 0.91457 0.89462 0.89371 0.92140 0.88692 0.89010 0.86250 0.88690 0.88903 0.88917 0.88640 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.41 9.91 59.84 0.59 1.01 16 2 N -0.62 -6.47 2.73 -181.58 -0.50 -6.96 16 3 C 0.11 1.41 4.78 -4.05 -0.02 1.39 16 4 C 0.13 1.67 3.06 -66.96 -0.20 1.46 16 5 H 0.08 1.26 8.14 -51.93 -0.42 0.83 16 6 C -0.13 -1.03 5.68 -24.90 -0.14 -1.17 16 7 C -0.13 -1.05 7.09 -24.58 -0.17 -1.23 16 8 C 0.10 1.09 6.65 -2.53 -0.02 1.07 16 9 N -0.62 -9.42 3.06 -163.02 -0.50 -9.92 16 10 C 0.54 11.04 7.60 -10.98 -0.08 10.96 16 11 O -0.50 -12.39 15.04 5.56 0.08 -12.30 16 12 C -0.15 -3.10 5.25 36.01 0.19 -2.91 16 13 S -0.06 -1.66 20.57 -107.50 -2.21 -3.87 16 14 C -0.54 -15.56 9.50 30.94 0.29 -15.27 16 15 H 0.07 1.96 7.80 -52.49 -0.41 1.55 16 16 C 0.07 2.13 5.49 -17.43 -0.10 2.04 16 17 N -0.87 -26.71 13.22 55.49 0.73 -25.98 16 18 Si 0.92 21.73 29.55 -169.99 -5.02 16.71 16 19 H -0.27 -6.31 7.11 56.52 0.40 -5.91 16 20 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 21 H -0.27 -6.32 7.11 56.52 0.40 -5.92 16 22 C 0.51 6.41 7.63 -10.98 -0.08 6.33 16 23 O -0.51 -9.40 15.23 5.56 0.08 -9.31 16 24 C -0.11 -0.88 4.53 -27.88 -0.13 -1.01 16 25 C -0.14 -1.40 5.42 -90.58 -0.49 -1.89 16 26 C -0.18 -1.34 10.25 -26.73 -0.27 -1.61 16 27 C -0.18 -1.54 10.18 -26.69 -0.27 -1.81 16 28 H 0.06 0.27 8.14 -51.93 -0.42 -0.15 16 29 H 0.07 0.32 6.06 -51.93 -0.31 0.00 16 30 H 0.07 0.26 6.44 -51.93 -0.33 -0.08 16 31 H 0.08 0.85 7.94 -51.93 -0.41 0.44 16 32 H 0.10 1.79 6.36 -51.93 -0.33 1.46 16 33 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 34 H 0.08 0.49 6.18 -51.93 -0.32 0.17 16 35 H 0.08 0.64 8.14 -51.93 -0.42 0.21 16 36 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 37 H 0.08 0.85 7.51 -51.93 -0.39 0.46 16 38 H 0.07 0.64 8.14 -51.93 -0.42 0.21 16 39 H 0.09 1.72 7.77 -51.92 -0.40 1.32 16 40 H 0.09 1.73 8.14 -51.92 -0.42 1.31 16 41 H 0.27 7.70 8.31 -40.82 -0.34 7.36 16 42 H 0.09 0.57 7.40 -51.93 -0.38 0.18 16 43 H 0.09 0.60 7.84 -51.93 -0.41 0.19 16 44 H 0.12 1.50 7.30 -51.93 -0.38 1.12 16 45 H 0.09 0.67 8.14 -51.93 -0.42 0.24 16 46 H 0.09 0.54 8.14 -51.93 -0.42 0.12 16 47 H 0.09 0.70 8.03 -51.93 -0.42 0.29 16 48 H 0.10 0.85 8.14 -51.93 -0.42 0.43 16 LS Contribution 400.13 15.07 6.03 6.03 Total: -1.00 -38.33 400.13 -10.07 -48.41 By element: Atomic # 1 Polarization: 7.71 SS G_CDS: -7.87 Total: -0.15 kcal Atomic # 6 Polarization: -1.74 SS G_CDS: -0.91 Total: -2.64 kcal Atomic # 7 Polarization: -42.60 SS G_CDS: -0.26 Total: -42.86 kcal Atomic # 8 Polarization: -21.78 SS G_CDS: 0.17 Total: -21.61 kcal Atomic # 14 Polarization: 21.73 SS G_CDS: -5.02 Total: 16.71 kcal Atomic # 16 Polarization: -1.66 SS G_CDS: -2.21 Total: -3.87 kcal Total LS contribution 6.03 Total: 6.03 kcal Total: -38.33 -10.07 -48.41 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001279777787.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.803 kcal (2) G-P(sol) polarization free energy of solvation -38.335 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.531 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.072 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.407 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.603 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds