Wall clock time and date at job start Sat Apr 11 2020 06:07:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86808 * 119.99864 * 2 1 4 4 H 1.48496 * 109.46905 * 269.99818 * 3 2 1 5 5 H 1.48499 * 109.46911 * 30.00103 * 3 2 1 6 6 H 1.48504 * 109.46844 * 149.99849 * 3 2 1 7 7 C 1.37876 * 120.00417 * 179.97438 * 2 1 3 8 8 H 1.08006 * 120.00042 * 0.02562 * 7 2 1 9 9 C 1.50698 * 120.00192 * 180.02562 * 7 2 1 10 10 C 1.53003 * 109.47141 * 179.97438 * 9 7 2 11 11 H 1.09001 * 109.47268 * 304.99930 * 10 9 7 12 12 N 1.46500 * 109.46998 * 65.00015 * 10 9 7 13 13 C 1.34772 * 120.00027 * 204.99830 * 12 10 9 14 14 O 1.21281 * 120.00165 * 0.02562 * 13 12 10 15 15 C 1.50706 * 120.00015 * 179.97438 * 13 12 10 16 16 H 1.08996 * 109.68575 * 60.54814 * 15 13 12 17 17 C 1.53438 * 109.69323 * 181.13210 * 15 13 12 18 18 C 1.53197 * 109.56446 * 169.43302 * 17 15 13 19 19 C 1.53421 * 109.53253 * 289.94771 * 18 17 15 20 20 C 1.50601 * 108.36482 * 49.80597 * 19 18 17 21 21 N 1.32909 * 129.16010 * 163.49391 * 20 19 18 22 22 N 1.29022 * 108.63453 * 180.12420 * 21 20 19 23 23 N 1.29105 * 110.25751 * 359.97132 * 22 21 20 24 24 H 0.97003 * 126.00641 * 179.97438 * 23 22 21 25 25 C 1.34402 * 107.98740 * 359.93507 * 23 22 21 26 26 C 1.50699 * 109.47037 * 184.99704 * 10 9 7 27 27 C 1.38233 * 120.00447 * 279.73006 * 26 10 9 28 28 C 1.38234 * 119.99987 * 179.81382 * 27 26 10 29 29 C 1.38232 * 120.00049 * 0.39473 * 28 27 26 30 30 C 1.38236 * 120.00074 * 359.85509 * 29 28 27 31 31 C 1.38226 * 119.99895 * 359.96013 * 30 29 28 32 32 H 0.96995 * 120.00141 * 359.97438 * 1 2 3 33 33 H 1.08999 * 109.47262 * 59.99829 * 9 7 2 34 34 H 1.09003 * 109.47241 * 299.99773 * 9 7 2 35 35 H 0.97000 * 119.99984 * 24.99856 * 12 10 9 36 36 H 1.09000 * 109.45996 * 289.45317 * 17 15 13 37 37 H 1.09003 * 109.45618 * 49.41776 * 17 15 13 38 38 H 1.08998 * 109.50552 * 169.91220 * 18 17 15 39 39 H 1.09004 * 109.45592 * 49.95137 * 18 17 15 40 40 H 1.09002 * 109.69097 * 290.07474 * 19 18 17 41 41 H 1.09006 * 109.69218 * 169.53439 * 19 18 17 42 42 H 1.07997 * 119.99569 * 359.97438 * 27 26 10 43 43 H 1.08000 * 119.99963 * 180.22620 * 28 27 26 44 44 H 1.08008 * 120.00122 * 179.83921 * 29 28 27 45 45 H 1.08000 * 119.99875 * 179.97438 * 30 29 28 46 46 H 1.07999 * 120.00308 * 179.97438 * 31 30 29 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4465 2.6527 0.7001 6 1 3.5467 1.4402 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 1.4646 -2.1294 0.0005 9 6 3.5115 -1.1939 0.0011 10 6 4.0216 -2.6364 0.0023 11 1 3.5867 -3.1749 0.8443 12 7 3.6346 -3.2922 -1.2492 13 6 3.5078 -4.6332 -1.2962 14 8 3.7138 -5.2969 -0.3023 15 6 3.1091 -5.3078 -2.5835 16 1 3.8505 -5.0961 -3.3539 17 6 3.0086 -6.8230 -2.3637 18 6 2.3543 -7.4763 -3.5852 19 6 0.8708 -7.0892 -3.6408 20 6 0.7645 -5.5943 -3.4921 21 7 -0.2595 -4.7939 -3.7700 22 7 0.0796 -3.5799 -3.4947 23 7 1.2891 -3.5448 -3.0443 24 1 1.7720 -2.7501 -2.7683 25 6 1.7612 -4.8030 -3.0244 26 6 5.5235 -2.6381 0.1266 27 6 6.3095 -2.4031 -0.9860 28 6 7.6870 -2.4008 -0.8710 29 6 8.2787 -2.6415 0.3548 30 6 7.4928 -2.8816 1.4664 31 6 6.1153 -2.8801 1.3523 32 1 -0.4850 0.8400 0.0004 33 1 3.8745 -0.6799 0.8911 34 1 3.8752 -0.6803 -0.8889 35 1 3.4695 -2.7614 -2.0441 36 1 4.0072 -7.2364 -2.2223 37 1 2.4045 -7.0222 -1.4785 38 1 2.4441 -8.5600 -3.5101 39 1 2.8533 -7.1329 -4.4914 40 1 0.3328 -7.5783 -2.8287 41 1 0.4473 -7.3941 -4.5979 42 1 5.8472 -2.2188 -1.9444 43 1 8.3010 -2.2136 -1.7396 44 1 9.3551 -2.6423 0.4441 45 1 7.9552 -3.0701 2.4241 46 1 5.5012 -3.0681 2.2206 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597422708.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:07:20 Heat of formation + Delta-G solvation = 68.431755 kcal Electronic energy + Delta-G solvation = -30156.321650 eV Core-core repulsion = 26240.095391 eV Total energy + Delta-G solvation = -3916.226259 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 2.04 seconds Orbital eigenvalues (eV) -43.30298 -40.04527 -38.82560 -36.82895 -35.44643 -33.81849 -32.79767 -31.51021 -30.71215 -30.27714 -29.99007 -29.40680 -25.58889 -24.39790 -22.94480 -22.60163 -22.40548 -21.91581 -20.78932 -20.08545 -19.50033 -18.06050 -17.25917 -16.99978 -16.53120 -16.13506 -15.65620 -15.32769 -15.01018 -14.52218 -14.45382 -14.25566 -13.88866 -13.73015 -13.63034 -13.38272 -13.21655 -12.91022 -12.70501 -12.51257 -12.26590 -12.10210 -11.49702 -11.42395 -11.31000 -11.24194 -11.20730 -11.08698 -10.88278 -10.69177 -10.55619 -10.40186 -10.19068 -10.01657 -9.72092 -9.47955 -8.83690 -8.77016 -8.72214 -8.71207 -8.44364 -6.23040 -4.26894 1.53914 1.58069 1.70988 2.63471 2.75829 2.98569 3.14877 3.26078 3.27253 3.34391 4.00350 4.26064 4.33375 4.40603 4.66094 4.72695 4.87312 5.03541 5.04949 5.09516 5.12527 5.17239 5.20303 5.27346 5.30269 5.41525 5.62329 5.67515 5.69222 5.78497 5.84882 5.88758 5.96345 6.03960 6.07166 6.16814 6.23265 6.26181 6.32166 6.49820 6.61541 6.64714 6.76475 6.87958 7.04283 7.11784 7.17973 7.49932 7.68192 8.27901 8.36454 8.67974 8.78924 9.35845 10.88312 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.008093 B = 0.005366 C = 0.003489 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3459.120610 B = 5217.129771 C = 8022.886689 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.886 5.886 2 C 0.076 3.924 3 Si 0.873 3.127 4 H -0.276 1.276 5 H -0.286 1.286 6 H -0.265 1.265 7 C -0.536 4.536 8 H 0.074 0.926 9 C -0.014 4.014 10 C 0.194 3.806 11 H 0.095 0.905 12 N -0.706 5.706 13 C 0.516 3.484 14 O -0.527 6.527 15 C -0.030 4.030 16 H 0.114 0.886 17 C -0.096 4.096 18 C -0.118 4.118 19 C -0.033 4.033 20 C -0.011 4.011 21 N -0.268 5.268 22 N -0.064 5.064 23 N -0.364 5.364 24 H 0.452 0.548 25 C -0.020 4.020 26 C -0.078 4.078 27 C -0.111 4.111 28 C -0.124 4.124 29 C -0.132 4.132 30 C -0.121 4.121 31 C -0.106 4.106 32 H 0.266 0.734 33 H 0.037 0.963 34 H 0.018 0.982 35 H 0.389 0.611 36 H 0.081 0.919 37 H 0.082 0.918 38 H 0.079 0.921 39 H 0.068 0.932 40 H 0.083 0.917 41 H 0.084 0.916 42 H 0.115 0.885 43 H 0.116 0.884 44 H 0.115 0.885 45 H 0.118 0.882 46 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.014 -10.657 -6.581 18.063 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.523 5.523 2 C -0.128 4.128 3 Si 0.700 3.300 4 H -0.202 1.202 5 H -0.212 1.212 6 H -0.189 1.189 7 C -0.574 4.574 8 H 0.092 0.908 9 C -0.052 4.052 10 C 0.090 3.910 11 H 0.113 0.887 12 N -0.356 5.356 13 C 0.301 3.699 14 O -0.402 6.402 15 C -0.054 4.054 16 H 0.131 0.869 17 C -0.134 4.134 18 C -0.156 4.156 19 C -0.072 4.072 20 C -0.152 4.152 21 N -0.133 5.133 22 N -0.043 5.043 23 N -0.085 5.085 24 H 0.301 0.699 25 C -0.156 4.156 26 C -0.079 4.079 27 C -0.129 4.129 28 C -0.142 4.142 29 C -0.150 4.150 30 C -0.139 4.139 31 C -0.124 4.124 32 H 0.076 0.924 33 H 0.055 0.945 34 H 0.036 0.964 35 H 0.224 0.776 36 H 0.100 0.900 37 H 0.101 0.899 38 H 0.098 0.902 39 H 0.087 0.913 40 H 0.102 0.898 41 H 0.102 0.898 42 H 0.134 0.866 43 H 0.134 0.866 44 H 0.133 0.867 45 H 0.136 0.864 46 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 11.615 -10.242 -6.247 16.698 hybrid contribution 1.495 1.514 0.174 2.135 sum 13.109 -8.728 -6.073 16.879 Atomic orbital electron populations 1.69901 1.06222 1.27257 1.48873 1.24993 0.94652 0.98992 0.94135 0.86882 0.80490 0.83937 0.78645 1.20198 1.21169 1.18932 1.20952 0.88485 0.94627 1.53288 0.90787 1.19898 0.97898 0.89568 0.97845 1.20042 0.87896 0.96483 0.86545 0.88665 1.46065 1.69455 1.06129 1.13979 1.20304 0.77243 0.82617 0.89784 1.90693 1.49791 1.63907 1.35831 1.20013 0.91488 0.97701 0.96158 0.86854 1.21460 1.02711 0.89956 0.99296 1.21679 0.94643 1.00941 0.98322 1.19973 0.97151 0.86832 1.03287 1.21640 0.90426 0.97956 1.05158 1.74854 1.24450 0.95818 1.18197 1.78682 0.95210 1.15627 1.14828 1.44967 1.11879 1.09225 1.42438 0.69929 1.21386 0.99285 0.85624 1.09345 1.20509 0.96627 0.97224 0.93543 1.20897 0.93432 1.00252 0.98321 1.21054 0.94777 1.00912 0.97452 1.21042 0.99351 1.01416 0.93161 1.21079 0.93803 1.00572 0.98436 1.21041 0.94698 0.99283 0.97413 0.92356 0.94530 0.96362 0.77640 0.90001 0.89934 0.90225 0.91348 0.89821 0.89779 0.86649 0.86582 0.86654 0.86402 0.85982 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.66 13.96 55.43 0.77 -24.88 16 2 C 0.08 2.03 5.47 -17.82 -0.10 1.93 16 3 Si 0.87 20.05 27.47 -169.99 -4.67 15.38 16 4 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 5 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 6 H -0.26 -5.88 6.54 56.52 0.37 -5.51 16 7 C -0.54 -13.43 9.39 -34.44 -0.32 -13.75 16 8 H 0.07 2.07 7.99 -52.48 -0.42 1.65 16 9 C -0.01 -0.30 3.56 -27.88 -0.10 -0.40 16 10 C 0.19 3.49 2.12 -69.08 -0.15 3.35 16 11 H 0.10 1.94 7.44 -51.93 -0.39 1.56 16 12 N -0.71 -11.07 3.59 -54.93 -0.20 -11.27 16 13 C 0.52 8.09 7.10 -10.98 -0.08 8.02 16 14 O -0.53 -9.92 15.50 5.56 0.09 -9.83 16 15 C -0.03 -0.37 2.91 -92.78 -0.27 -0.64 16 16 H 0.11 1.05 8.14 -51.93 -0.42 0.63 16 17 C -0.10 -1.03 4.66 -26.40 -0.12 -1.15 16 18 C -0.12 -1.00 5.90 -26.41 -0.16 -1.15 16 19 C -0.03 -0.36 6.30 -27.71 -0.17 -0.53 16 20 C -0.01 -0.17 7.11 -83.12 -0.59 -0.76 16 21 N -0.27 -4.89 12.40 33.16 0.41 -4.48 16 22 N -0.06 -1.24 13.40 60.35 0.81 -0.43 16 23 N -0.36 -6.06 6.76 33.39 0.23 -5.83 16 24 H 0.45 7.22 6.82 -190.07 -1.30 5.92 16 25 C -0.02 -0.30 6.38 -82.50 -0.53 -0.82 16 26 C -0.08 -1.25 4.91 -104.62 -0.51 -1.77 16 27 C -0.11 -1.57 9.33 -39.58 -0.37 -1.94 16 28 C -0.12 -1.56 10.05 -39.59 -0.40 -1.96 16 29 C -0.13 -1.61 10.05 -39.58 -0.40 -2.01 16 30 C -0.12 -1.58 10.05 -39.59 -0.40 -1.98 16 31 C -0.11 -1.62 9.67 -39.58 -0.38 -2.00 16 32 H 0.27 7.33 8.31 -40.82 -0.34 6.99 16 33 H 0.04 0.79 7.20 -51.93 -0.37 0.42 16 34 H 0.02 0.36 7.57 -51.93 -0.39 -0.03 16 35 H 0.39 5.42 6.64 -40.82 -0.27 5.15 16 36 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 37 H 0.08 1.06 7.75 -51.93 -0.40 0.65 16 38 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 39 H 0.07 0.52 8.12 -51.93 -0.42 0.10 16 40 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 41 H 0.08 0.79 8.14 -51.93 -0.42 0.36 16 42 H 0.12 1.47 7.71 -52.49 -0.40 1.06 16 43 H 0.12 1.17 8.06 -52.49 -0.42 0.74 16 44 H 0.12 1.11 8.06 -52.48 -0.42 0.69 16 45 H 0.12 1.26 8.06 -52.49 -0.42 0.84 16 46 H 0.12 1.80 8.04 -52.49 -0.42 1.38 16 LS Contribution 377.23 15.07 5.68 5.68 Total: -1.00 -32.56 377.23 -9.26 -41.82 By element: Atomic # 1 Polarization: 18.77 SS G_CDS: -7.34 Total: 11.43 kcal Atomic # 6 Polarization: -12.53 SS G_CDS: -5.04 Total: -17.58 kcal Atomic # 7 Polarization: -48.92 SS G_CDS: 2.02 Total: -46.90 kcal Atomic # 8 Polarization: -9.92 SS G_CDS: 0.09 Total: -9.83 kcal Atomic # 14 Polarization: 20.05 SS G_CDS: -4.67 Total: 15.38 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -32.56 -9.26 -41.82 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597422708.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.250 kcal (2) G-P(sol) polarization free energy of solvation -32.558 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 77.691 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.260 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.818 kcal (6) G-S(sol) free energy of system = (1) + (5) 68.432 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.04 seconds