Wall clock time and date at job start Sat Apr 11 2020 06:07:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86808 * 119.99864 * 2 1 4 4 H 1.48496 * 109.46905 * 269.99818 * 3 2 1 5 5 H 1.48499 * 109.46911 * 30.00103 * 3 2 1 6 6 H 1.48504 * 109.46844 * 149.99849 * 3 2 1 7 7 C 1.37876 * 120.00417 * 179.97438 * 2 1 3 8 8 H 1.08006 * 120.00042 * 0.02562 * 7 2 1 9 9 C 1.50698 * 120.00192 * 180.02562 * 7 2 1 10 10 C 1.53003 * 109.47141 * 179.97438 * 9 7 2 11 11 H 1.09001 * 109.47268 * 304.99930 * 10 9 7 12 12 N 1.46500 * 109.46998 * 65.00015 * 10 9 7 13 13 C 1.34772 * 120.00027 * 204.99830 * 12 10 9 14 14 O 1.21281 * 120.00165 * 0.02562 * 13 12 10 15 15 C 1.50706 * 120.00015 * 179.97438 * 13 12 10 16 16 H 1.08996 * 109.68575 * 60.54814 * 15 13 12 17 17 C 1.53438 * 109.69323 * 181.13210 * 15 13 12 18 18 C 1.53197 * 109.56446 * 169.43302 * 17 15 13 19 19 C 1.53421 * 109.53253 * 289.94771 * 18 17 15 20 20 C 1.50601 * 108.36482 * 49.80597 * 19 18 17 21 21 N 1.32909 * 129.16010 * 163.49391 * 20 19 18 22 22 N 1.29022 * 108.63453 * 180.12420 * 21 20 19 23 23 N 1.29105 * 110.25751 * 359.97132 * 22 21 20 24 24 H 0.97003 * 126.00641 * 179.97438 * 23 22 21 25 25 C 1.34402 * 107.98740 * 359.93507 * 23 22 21 26 26 C 1.50699 * 109.47037 * 184.99704 * 10 9 7 27 27 C 1.38233 * 120.00447 * 279.73006 * 26 10 9 28 28 C 1.38234 * 119.99987 * 179.81382 * 27 26 10 29 29 C 1.38232 * 120.00049 * 0.39473 * 28 27 26 30 30 C 1.38236 * 120.00074 * 359.85509 * 29 28 27 31 31 C 1.38226 * 119.99895 * 359.96013 * 30 29 28 32 32 H 0.96995 * 120.00141 * 359.97438 * 1 2 3 33 33 H 1.08999 * 109.47262 * 59.99829 * 9 7 2 34 34 H 1.09003 * 109.47241 * 299.99773 * 9 7 2 35 35 H 0.97000 * 119.99984 * 24.99856 * 12 10 9 36 36 H 1.09000 * 109.45996 * 289.45317 * 17 15 13 37 37 H 1.09003 * 109.45618 * 49.41776 * 17 15 13 38 38 H 1.08998 * 109.50552 * 169.91220 * 18 17 15 39 39 H 1.09004 * 109.45592 * 49.95137 * 18 17 15 40 40 H 1.09002 * 109.69097 * 290.07474 * 19 18 17 41 41 H 1.09006 * 109.69218 * 169.53439 * 19 18 17 42 42 H 1.07997 * 119.99569 * 359.97438 * 27 26 10 43 43 H 1.08000 * 119.99963 * 180.22620 * 28 27 26 44 44 H 1.08008 * 120.00122 * 179.83921 * 29 28 27 45 45 H 1.08000 * 119.99875 * 179.97438 * 30 29 28 46 46 H 1.07999 * 120.00308 * 179.97438 * 31 30 29 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4465 2.6527 0.7001 6 1 3.5467 1.4402 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 1.4646 -2.1294 0.0005 9 6 3.5115 -1.1939 0.0011 10 6 4.0216 -2.6364 0.0023 11 1 3.5867 -3.1749 0.8443 12 7 3.6346 -3.2922 -1.2492 13 6 3.5078 -4.6332 -1.2962 14 8 3.7138 -5.2969 -0.3023 15 6 3.1091 -5.3078 -2.5835 16 1 3.8505 -5.0961 -3.3539 17 6 3.0086 -6.8230 -2.3637 18 6 2.3543 -7.4763 -3.5852 19 6 0.8708 -7.0892 -3.6408 20 6 0.7645 -5.5943 -3.4921 21 7 -0.2595 -4.7939 -3.7700 22 7 0.0796 -3.5799 -3.4947 23 7 1.2891 -3.5448 -3.0443 24 1 1.7720 -2.7501 -2.7683 25 6 1.7612 -4.8030 -3.0244 26 6 5.5235 -2.6381 0.1266 27 6 6.3095 -2.4031 -0.9860 28 6 7.6870 -2.4008 -0.8710 29 6 8.2787 -2.6415 0.3548 30 6 7.4928 -2.8816 1.4664 31 6 6.1153 -2.8801 1.3523 32 1 -0.4850 0.8400 0.0004 33 1 3.8745 -0.6799 0.8911 34 1 3.8752 -0.6803 -0.8889 35 1 3.4695 -2.7614 -2.0441 36 1 4.0072 -7.2364 -2.2223 37 1 2.4045 -7.0222 -1.4785 38 1 2.4441 -8.5600 -3.5101 39 1 2.8533 -7.1329 -4.4914 40 1 0.3328 -7.5783 -2.8287 41 1 0.4473 -7.3941 -4.5979 42 1 5.8472 -2.2188 -1.9444 43 1 8.3010 -2.2136 -1.7396 44 1 9.3551 -2.6423 0.4441 45 1 7.9552 -3.0701 2.4241 46 1 5.5012 -3.0681 2.2206 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597422708.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:07:19 Heat of formation + Delta-G solvation = 47.444290 kcal Electronic energy + Delta-G solvation = -30157.231735 eV Core-core repulsion = 26240.095391 eV Total energy + Delta-G solvation = -3917.136344 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -44.57838 -41.31360 -39.93131 -37.84950 -36.84012 -35.13856 -34.68167 -32.81873 -31.73766 -31.29507 -31.12530 -30.98321 -27.05636 -25.56208 -24.24508 -23.64786 -23.61793 -23.25063 -22.10171 -21.39257 -20.51564 -19.34933 -19.04220 -18.21396 -17.77138 -17.41941 -16.96018 -16.55302 -16.31941 -16.07510 -15.51988 -15.37770 -14.99528 -14.84347 -14.75156 -14.56816 -14.50363 -14.21902 -14.09251 -13.94918 -13.62803 -13.17197 -13.06718 -12.64465 -12.50945 -12.44101 -12.38477 -12.22252 -12.01542 -11.96903 -11.83231 -11.77966 -11.62313 -11.50131 -11.35547 -10.99166 -10.81124 -10.18324 -9.94265 -9.77078 -9.56511 -8.31637 -6.38972 0.43483 0.48193 0.54779 1.31744 1.35394 1.36833 1.46081 1.51173 1.73509 2.10927 2.30955 2.93940 3.03930 3.22487 3.34861 3.58041 3.76902 3.87703 3.94468 4.00279 4.17393 4.19501 4.29801 4.32106 4.33645 4.35238 4.49115 4.52801 4.63791 4.70408 4.74925 4.94803 4.99767 5.02174 5.11873 5.14591 5.15208 5.20046 5.20261 5.34499 5.42817 5.48144 5.51610 5.62789 5.64475 5.75083 5.80878 6.16396 6.18548 6.41109 6.69413 7.09967 7.26987 7.36369 8.83265 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.008093 B = 0.005366 C = 0.003489 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3459.120610 B = 5217.129771 C = 8022.886689 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.940 5.940 2 C 0.017 3.983 3 Si 0.941 3.059 4 H -0.261 1.261 5 H -0.293 1.293 6 H -0.248 1.248 7 C -0.523 4.523 8 H 0.030 0.970 9 C -0.007 4.007 10 C 0.206 3.794 11 H 0.057 0.943 12 N -0.702 5.702 13 C 0.512 3.488 14 O -0.562 6.562 15 C -0.021 4.021 16 H 0.156 0.844 17 C -0.095 4.095 18 C -0.106 4.106 19 C -0.036 4.036 20 C -0.016 4.016 21 N -0.292 5.292 22 N -0.115 5.115 23 N -0.366 5.366 24 H 0.451 0.549 25 C -0.013 4.013 26 C -0.099 4.099 27 C -0.118 4.118 28 C -0.121 4.121 29 C -0.127 4.127 30 C -0.124 4.124 31 C -0.130 4.130 32 H 0.265 0.735 33 H 0.031 0.969 34 H 0.039 0.961 35 H 0.398 0.602 36 H 0.100 0.900 37 H 0.055 0.945 38 H 0.109 0.891 39 H 0.087 0.913 40 H 0.084 0.916 41 H 0.102 0.898 42 H 0.128 0.872 43 H 0.148 0.852 44 H 0.149 0.851 45 H 0.140 0.860 46 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.210 -11.355 -8.290 22.222 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.181 4.181 3 Si 0.765 3.235 4 H -0.185 1.185 5 H -0.219 1.219 6 H -0.172 1.172 7 C -0.561 4.561 8 H 0.048 0.952 9 C -0.045 4.045 10 C 0.101 3.899 11 H 0.075 0.925 12 N -0.353 5.353 13 C 0.299 3.701 14 O -0.440 6.440 15 C -0.044 4.044 16 H 0.173 0.827 17 C -0.134 4.134 18 C -0.143 4.143 19 C -0.075 4.075 20 C -0.158 4.158 21 N -0.157 5.157 22 N -0.093 5.093 23 N -0.087 5.087 24 H 0.299 0.701 25 C -0.150 4.150 26 C -0.100 4.100 27 C -0.137 4.137 28 C -0.139 4.139 29 C -0.144 4.144 30 C -0.141 4.141 31 C -0.149 4.149 32 H 0.074 0.926 33 H 0.049 0.951 34 H 0.057 0.943 35 H 0.234 0.766 36 H 0.118 0.882 37 H 0.074 0.926 38 H 0.128 0.872 39 H 0.106 0.894 40 H 0.103 0.897 41 H 0.120 0.880 42 H 0.146 0.854 43 H 0.166 0.834 44 H 0.167 0.833 45 H 0.158 0.842 46 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges 15.815 -10.937 -7.981 20.819 hybrid contribution 0.221 1.616 0.787 1.811 sum 16.036 -9.321 -7.194 19.895 Atomic orbital electron populations 1.70076 1.08334 1.28058 1.51496 1.25864 0.95265 1.02986 0.94014 0.85806 0.79415 0.78880 0.79431 1.18534 1.21935 1.17210 1.21108 0.90827 0.92712 1.51477 0.95161 1.19769 0.94580 0.91891 0.98239 1.19588 0.89782 0.94198 0.86346 0.92471 1.46005 1.69236 1.06529 1.13520 1.20924 0.76317 0.82267 0.90640 1.90677 1.51352 1.64549 1.37403 1.20232 0.90850 0.98313 0.95002 0.82673 1.21526 1.03597 0.88721 0.99509 1.21680 0.92406 1.02537 0.97704 1.20243 0.99351 0.83633 1.04268 1.22453 0.89326 0.99887 1.04090 1.74793 1.25859 0.96093 1.18916 1.78644 0.96633 1.16593 1.17415 1.44983 1.11483 1.10026 1.42201 0.70093 1.21874 1.00279 0.84712 1.08162 1.20302 0.94967 0.99882 0.94893 1.21095 0.94376 1.00164 0.98023 1.21446 0.94197 0.99465 0.98807 1.21485 1.01022 0.99443 0.92485 1.21369 0.92780 0.99858 1.00139 1.21155 0.96077 1.00656 0.97003 0.92603 0.95123 0.94318 0.76600 0.88173 0.92581 0.87218 0.89426 0.89734 0.88005 0.85410 0.83410 0.83338 0.84190 0.87152 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.09 13.96 21.45 0.30 -56.80 16 2 C 0.02 0.95 5.47 84.66 0.46 1.41 16 3 Si 0.94 41.64 27.47 68.60 1.88 43.52 16 4 H -0.26 -10.85 7.11 99.48 0.71 -10.14 16 5 H -0.29 -13.27 7.11 99.48 0.71 -12.57 16 6 H -0.25 -10.26 6.54 99.48 0.65 -9.61 16 7 C -0.52 -27.40 9.39 25.60 0.24 -27.16 16 8 H 0.03 1.81 7.99 -2.91 -0.02 1.79 16 9 C -0.01 -0.30 3.56 29.85 0.11 -0.19 16 10 C 0.21 7.62 2.12 44.25 0.09 7.71 16 11 H 0.06 2.52 7.44 -2.39 -0.02 2.50 16 12 N -0.70 -22.32 3.59 -446.09 -1.60 -23.92 16 13 C 0.51 16.11 7.10 87.66 0.62 16.73 16 14 O -0.56 -21.69 15.50 -3.03 -0.05 -21.74 16 15 C -0.02 -0.48 2.91 -12.19 -0.04 -0.51 16 16 H 0.16 2.31 8.14 -2.39 -0.02 2.29 16 17 C -0.10 -1.83 4.66 30.81 0.14 -1.69 16 18 C -0.11 -1.40 5.90 30.80 0.18 -1.22 16 19 C -0.04 -0.70 6.30 29.96 0.19 -0.51 16 20 C -0.02 -0.48 7.11 41.75 0.30 -0.19 16 21 N -0.29 -11.00 12.40 -48.99 -0.61 -11.61 16 22 N -0.11 -4.66 13.40 37.02 0.50 -4.16 16 23 N -0.37 -12.67 6.76 -48.27 -0.33 -12.99 16 24 H 0.45 15.13 6.82 -219.68 -1.50 13.63 16 25 C -0.01 -0.39 6.38 41.50 0.26 -0.12 16 26 C -0.10 -3.14 4.91 -19.86 -0.10 -3.24 16 27 C -0.12 -3.07 9.33 22.27 0.21 -2.86 16 28 C -0.12 -2.56 10.05 22.27 0.22 -2.33 16 29 C -0.13 -2.58 10.05 22.27 0.22 -2.36 16 30 C -0.12 -2.95 10.05 22.27 0.22 -2.73 16 31 C -0.13 -3.95 9.67 22.27 0.22 -3.74 16 32 H 0.26 15.25 8.31 -92.71 -0.77 14.48 16 33 H 0.03 1.33 7.20 -2.39 -0.02 1.31 16 34 H 0.04 1.47 7.57 -2.39 -0.02 1.46 16 35 H 0.40 11.07 6.64 -92.71 -0.62 10.46 16 36 H 0.10 1.61 8.14 -2.39 -0.02 1.59 16 37 H 0.06 1.40 7.75 -2.39 -0.02 1.38 16 38 H 0.11 0.90 8.14 -2.39 -0.02 0.88 16 39 H 0.09 0.91 8.12 -2.39 -0.02 0.89 16 40 H 0.08 1.65 8.14 -2.39 -0.02 1.63 16 41 H 0.10 1.65 8.14 -2.38 -0.02 1.63 16 42 H 0.13 2.88 7.71 -2.91 -0.02 2.86 16 43 H 0.15 2.17 8.06 -2.91 -0.02 2.14 16 44 H 0.15 2.05 8.06 -2.91 -0.02 2.03 16 45 H 0.14 2.62 8.06 -2.91 -0.02 2.60 16 46 H 0.11 3.44 8.04 -2.91 -0.02 3.42 16 Total: -1.00 -76.56 377.23 2.52 -74.05 By element: Atomic # 1 Polarization: 37.79 SS G_CDS: -1.15 Total: 36.64 kcal Atomic # 6 Polarization: -26.55 SS G_CDS: 3.56 Total: -22.99 kcal Atomic # 7 Polarization: -107.74 SS G_CDS: -1.74 Total: -109.48 kcal Atomic # 8 Polarization: -21.69 SS G_CDS: -0.05 Total: -21.74 kcal Atomic # 14 Polarization: 41.64 SS G_CDS: 1.88 Total: 43.52 kcal Total: -76.56 2.52 -74.05 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597422708.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.489 kcal (2) G-P(sol) polarization free energy of solvation -76.561 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.929 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.515 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.045 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.444 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds