Wall clock time and date at job start Sat Apr 11 2020 06:03:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86801 * 120.00071 * 2 1 4 4 H 1.48510 * 109.47033 * 180.02562 * 3 2 1 5 5 H 1.48497 * 109.47000 * 299.99864 * 3 2 1 6 6 H 1.48494 * 109.46875 * 60.00216 * 3 2 1 7 7 C 1.37882 * 120.00047 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00096 * 180.02562 * 7 2 1 9 9 C 1.50702 * 119.99708 * 359.97438 * 7 2 1 10 10 N 1.46897 * 109.46920 * 180.02562 * 9 7 2 11 11 C 1.46898 * 111.00040 * 169.99971 * 10 9 7 12 12 C 1.53235 * 109.34152 * 187.25383 * 11 10 9 13 13 N 1.47082 * 108.52463 * 306.16802 * 12 11 10 14 14 C 1.34770 * 120.88334 * 231.19419 * 13 12 11 15 15 O 1.21565 * 120.00398 * 6.77474 * 14 13 12 16 16 C 1.47742 * 119.99579 * 186.78230 * 14 13 12 17 17 C 1.41184 * 126.33068 * 187.01660 * 16 14 13 18 18 C 1.36678 * 105.44848 * 180.02562 * 17 16 14 19 19 C 1.48002 * 126.59898 * 179.97438 * 18 17 16 20 20 C 1.39493 * 120.13261 * 359.75299 * 19 18 17 21 21 C 1.37982 * 119.85802 * 179.76762 * 20 19 18 22 22 C 1.38341 * 120.13845 * 0.50944 * 21 20 19 23 23 C 1.38345 * 120.27574 * 359.73838 * 22 21 20 24 24 C 1.37985 * 120.13511 * 0.02562 * 23 22 21 25 25 N 1.36372 * 106.80898 * 0.02562 * 18 17 16 26 26 H 0.97003 * 125.01248 * 180.02562 * 25 18 17 27 27 N 1.28453 * 109.97657 * 359.97438 * 25 18 17 28 28 C 1.47085 * 118.23287 * 51.45393 * 13 12 11 29 29 C 1.46898 * 111.00152 * 294.29960 * 10 9 7 30 30 H 0.96997 * 119.99547 * 0.02562 * 1 2 3 31 31 H 1.08998 * 109.47429 * 60.00121 * 9 7 2 32 32 H 1.09007 * 109.46846 * 300.00333 * 9 7 2 33 33 H 1.08996 * 109.49623 * 67.29000 * 11 10 9 34 34 H 1.09008 * 109.49090 * 307.20822 * 11 10 9 35 35 H 1.08998 * 109.63156 * 186.45871 * 12 11 10 36 36 H 1.09005 * 109.63237 * 65.87936 * 12 11 10 37 37 H 1.08002 * 127.27846 * 0.04167 * 17 16 14 38 38 H 1.07997 * 120.07106 * 0.02562 * 20 19 18 39 39 H 1.08002 * 119.93142 * 180.26810 * 21 20 19 40 40 H 1.08007 * 119.86136 * 179.76664 * 22 21 20 41 41 H 1.07999 * 119.93008 * 180.02562 * 23 22 21 42 42 H 1.07998 * 120.06748 * 180.02562 * 24 23 22 43 43 H 1.09001 * 109.62392 * 68.25684 * 28 13 12 44 44 H 1.09000 * 109.62881 * 188.83390 * 28 13 12 45 45 H 1.09006 * 109.49353 * 292.70761 * 29 10 9 46 46 H 1.09001 * 109.49330 * 52.78869 * 29 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7093 1.3463 -0.0006 5 1 1.8905 2.3964 -1.2125 6 1 1.8905 2.3963 1.2125 7 6 2.0046 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2510 -2.4992 -0.0005 10 7 2.2056 -3.6157 -0.0005 11 6 1.5211 -4.8935 0.2376 12 6 2.5637 -6.0032 0.4104 13 7 3.4615 -5.9864 -0.7544 14 6 3.7116 -7.1124 -1.4514 15 8 3.1003 -8.1323 -1.1984 16 6 4.7290 -7.1074 -2.5227 17 6 5.0007 -8.1603 -3.4231 18 6 6.0108 -7.7040 -4.2228 19 6 6.6578 -8.4385 -5.3329 20 6 6.2486 -9.7344 -5.6475 21 6 6.8525 -10.4123 -6.6866 22 6 7.8689 -9.8133 -7.4090 23 6 8.2827 -8.5302 -7.0986 24 6 7.6834 -7.8401 -6.0648 25 7 6.3086 -6.4419 -3.8005 26 1 6.9908 -5.8717 -4.1883 27 7 5.5517 -6.1192 -2.8141 28 6 4.0837 -4.7091 -1.1350 29 6 2.9766 -3.6492 -1.2504 30 1 -0.4849 0.8401 -0.0004 31 1 0.6240 -2.5568 -0.8903 32 1 0.6246 -2.5570 0.8897 33 1 0.8795 -5.1264 -0.6121 34 1 0.9160 -4.8191 1.1413 35 1 2.0631 -6.9694 0.4729 36 1 3.1394 -5.8265 1.3190 37 1 4.5132 -9.1229 -3.4703 38 1 5.4580 -10.2047 -5.0816 39 1 6.5336 -11.4141 -6.9340 40 1 8.3410 -10.3494 -8.2191 41 1 9.0764 -8.0678 -7.6665 42 1 8.0070 -6.8384 -5.8237 43 1 4.8026 -4.4104 -0.3721 44 1 4.5885 -4.8193 -2.0947 45 1 2.3147 -3.8994 -2.0796 46 1 3.4271 -2.6723 -1.4261 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602210214.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:03:15 Heat of formation + Delta-G solvation = 87.225704 kcal Electronic energy + Delta-G solvation = -28326.906858 eV Core-core repulsion = 24411.495566 eV Total energy + Delta-G solvation = -3915.411292 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -42.87924 -39.70515 -39.30722 -37.37904 -34.40504 -33.15744 -32.51979 -32.20471 -31.31176 -30.61290 -29.21159 -28.19916 -25.80068 -24.07705 -23.79471 -23.10966 -22.77277 -21.65676 -21.15756 -20.26536 -19.01610 -18.29746 -17.22198 -16.56299 -16.35528 -16.05463 -15.69964 -15.46044 -15.19129 -14.77359 -14.66522 -14.32458 -14.12959 -13.87525 -13.79357 -13.63100 -13.55303 -13.33451 -13.30152 -12.73402 -12.28111 -11.89664 -11.87362 -11.52844 -11.35335 -11.21258 -10.99123 -10.74285 -10.68336 -10.48276 -10.45115 -10.27712 -9.94525 -9.70416 -9.58594 -9.45685 -9.23114 -8.54198 -8.47552 -8.36241 -7.26475 -6.04275 -4.05807 0.41515 0.90599 1.49607 2.08375 2.45956 3.15202 3.29541 3.36939 3.37127 3.41368 3.45647 4.01892 4.21013 4.36351 4.41020 4.44942 4.64052 4.79464 4.91894 4.94801 5.02426 5.16852 5.31236 5.39597 5.42238 5.49495 5.52394 5.53599 5.71541 5.77613 5.90664 5.91419 5.95169 6.00829 6.02558 6.08332 6.22130 6.35015 6.43333 6.53241 6.57592 6.67551 6.83774 7.26773 7.32604 7.51170 7.68557 7.78020 8.05818 8.16665 8.28251 8.51752 9.01908 9.58442 11.06619 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.016524 B = 0.002235 C = 0.002023 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1694.126305 B =12527.499394 C =13837.516473 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.054 3.946 3 Si 0.898 3.102 4 H -0.272 1.272 5 H -0.285 1.285 6 H -0.284 1.284 7 C -0.507 4.507 8 H 0.064 0.936 9 C 0.192 3.808 10 N -0.536 5.536 11 C 0.041 3.959 12 C 0.118 3.882 13 N -0.593 5.593 14 C 0.598 3.402 15 O -0.543 6.543 16 C -0.001 4.001 17 C -0.155 4.155 18 C 0.051 3.949 19 C -0.018 4.018 20 C -0.095 4.095 21 C -0.113 4.113 22 C -0.117 4.117 23 C -0.113 4.113 24 C -0.116 4.116 25 N -0.381 5.381 26 H 0.445 0.555 27 N -0.239 5.239 28 C 0.094 3.906 29 C 0.051 3.949 30 H 0.261 0.739 31 H -0.009 1.009 32 H 0.032 0.968 33 H 0.027 0.973 34 H 0.082 0.918 35 H 0.089 0.911 36 H 0.075 0.925 37 H 0.166 0.834 38 H 0.132 0.868 39 H 0.129 0.871 40 H 0.125 0.875 41 H 0.126 0.874 42 H 0.119 0.881 43 H 0.073 0.927 44 H 0.116 0.884 45 H 0.022 0.978 46 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.761 -19.328 -13.836 29.085 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.147 4.147 3 Si 0.726 3.274 4 H -0.196 1.196 5 H -0.212 1.212 6 H -0.210 1.210 7 C -0.546 4.546 8 H 0.083 0.917 9 C 0.068 3.932 10 N -0.261 5.261 11 C -0.088 4.088 12 C -0.004 4.004 13 N -0.325 5.325 14 C 0.384 3.616 15 O -0.420 6.420 16 C -0.160 4.160 17 C -0.182 4.182 18 C -0.073 4.073 19 C -0.020 4.020 20 C -0.114 4.114 21 C -0.131 4.131 22 C -0.135 4.135 23 C -0.131 4.131 24 C -0.135 4.135 25 N -0.096 5.096 26 H 0.290 0.710 27 N -0.075 5.075 28 C -0.029 4.029 29 C -0.078 4.078 30 H 0.070 0.930 31 H 0.009 0.991 32 H 0.050 0.950 33 H 0.045 0.955 34 H 0.100 0.900 35 H 0.108 0.892 36 H 0.093 0.907 37 H 0.183 0.817 38 H 0.150 0.850 39 H 0.147 0.853 40 H 0.143 0.857 41 H 0.144 0.856 42 H 0.137 0.863 43 H 0.091 0.909 44 H 0.133 0.867 45 H 0.041 0.959 46 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 16.833 -18.587 -12.917 28.208 hybrid contribution -0.050 0.601 -1.107 1.261 sum 16.783 -17.986 -14.024 28.317 Atomic orbital electron populations 1.69972 1.06072 1.26677 1.51004 1.25006 0.94870 0.99352 0.95471 0.86444 0.80052 0.83437 0.77491 1.19644 1.21165 1.21015 1.21187 0.93511 0.89866 1.49994 0.91746 1.19735 0.90053 0.87255 0.96202 1.62095 1.27969 1.02645 1.33426 1.22397 0.94915 0.90560 1.00953 1.21825 0.91719 0.99696 0.87173 1.48074 1.46098 1.08625 1.29663 1.16959 0.81054 0.83448 0.80122 1.90757 1.50521 1.32576 1.68104 1.21903 1.00251 0.92662 1.01212 1.21679 0.99134 1.01116 0.96320 1.19866 1.00494 0.87432 0.99554 1.17922 0.96317 0.93987 0.93735 1.21195 0.99790 0.93080 0.97377 1.21141 0.96305 1.00207 0.95402 1.21292 0.97177 0.95320 0.99741 1.21059 0.99904 0.94951 0.97185 1.21084 0.96248 0.99805 0.96399 1.43744 1.29126 1.12340 1.24354 0.71014 1.73556 1.05214 1.24369 1.04394 1.22731 0.95771 0.81560 1.02883 1.22432 0.95103 0.99136 0.91103 0.92969 0.99136 0.95021 0.95487 0.90000 0.89244 0.90680 0.81678 0.85017 0.85338 0.85724 0.85560 0.86308 0.90907 0.86684 0.95948 0.88635 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.61 13.29 55.43 0.74 -25.88 16 2 C 0.05 1.53 5.46 -17.82 -0.10 1.43 16 3 Si 0.90 21.43 29.54 -169.99 -5.02 16.41 16 4 H -0.27 -6.33 7.11 56.52 0.40 -5.93 16 5 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 6 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 7 C -0.51 -14.05 8.41 -34.44 -0.29 -14.34 16 8 H 0.06 1.76 7.13 -52.49 -0.37 1.38 16 9 C 0.19 5.01 4.72 -4.98 -0.02 4.98 16 10 N -0.54 -11.58 4.62 -235.47 -1.09 -12.67 16 11 C 0.04 0.77 5.62 -3.70 -0.02 0.75 16 12 C 0.12 1.94 6.61 -3.60 -0.02 1.92 16 13 N -0.59 -9.92 3.00 -173.33 -0.52 -10.44 16 14 C 0.60 10.04 7.70 -12.38 -0.10 9.94 16 15 O -0.54 -10.18 16.38 5.31 0.09 -10.09 16 16 C 0.00 -0.01 6.81 -82.86 -0.56 -0.58 16 17 C -0.15 -1.84 10.16 -39.03 -0.40 -2.24 16 18 C 0.05 0.50 6.98 -82.41 -0.58 -0.08 16 19 C -0.02 -0.14 5.87 -104.96 -0.62 -0.76 16 20 C -0.10 -0.69 9.58 -39.21 -0.38 -1.07 16 21 C -0.11 -0.67 10.03 -39.64 -0.40 -1.07 16 22 C -0.12 -0.64 10.04 -39.50 -0.40 -1.04 16 23 C -0.11 -0.64 10.03 -39.63 -0.40 -1.04 16 24 C -0.12 -0.75 9.71 -39.21 -0.38 -1.14 16 25 N -0.38 -3.59 6.80 33.31 0.23 -3.36 16 26 H 0.44 2.60 8.08 -190.45 -1.54 1.06 16 27 N -0.24 -3.03 8.70 33.37 0.29 -2.74 16 28 C 0.09 1.53 6.26 -3.36 -0.02 1.51 16 29 C 0.05 1.01 5.47 -3.46 -0.02 0.99 16 30 H 0.26 7.29 8.31 -40.82 -0.34 6.95 16 31 H -0.01 -0.26 8.12 -51.93 -0.42 -0.68 16 32 H 0.03 0.88 7.97 -51.93 -0.41 0.46 16 33 H 0.03 0.53 8.14 -51.93 -0.42 0.10 16 34 H 0.08 1.46 7.99 -51.92 -0.41 1.04 16 35 H 0.09 1.42 7.04 -51.93 -0.37 1.05 16 36 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 37 H 0.17 1.74 7.39 -52.49 -0.39 1.35 16 38 H 0.13 0.83 7.09 -52.49 -0.37 0.46 16 39 H 0.13 0.50 8.06 -52.49 -0.42 0.08 16 40 H 0.12 0.43 8.06 -52.48 -0.42 0.00 16 41 H 0.13 0.46 8.06 -52.49 -0.42 0.03 16 42 H 0.12 0.52 7.19 -52.49 -0.38 0.14 16 43 H 0.07 1.18 8.14 -51.93 -0.42 0.76 16 44 H 0.12 1.73 4.32 -59.85 -0.26 1.47 16 45 H 0.02 0.46 8.14 -51.93 -0.42 0.03 16 46 H 0.10 1.96 6.67 -51.93 -0.35 1.62 16 LS Contribution 377.17 15.07 5.68 5.68 Total: -1.00 -33.79 377.17 -11.66 -45.46 By element: Atomic # 1 Polarization: 6.81 SS G_CDS: -7.37 Total: -0.56 kcal Atomic # 6 Polarization: 2.87 SS G_CDS: -4.69 Total: -1.82 kcal Atomic # 7 Polarization: -54.73 SS G_CDS: -0.35 Total: -55.08 kcal Atomic # 8 Polarization: -10.18 SS G_CDS: 0.09 Total: -10.09 kcal Atomic # 14 Polarization: 21.43 SS G_CDS: -5.02 Total: 16.41 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -33.79 -11.66 -45.46 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602210214.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 132.682 kcal (2) G-P(sol) polarization free energy of solvation -33.794 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 98.888 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.662 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.456 kcal (6) G-S(sol) free energy of system = (1) + (5) 87.226 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds