Wall clock time and date at job start Sat Apr 11 2020 06:03:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86801 * 119.99929 * 2 1 4 4 H 1.48506 * 109.47043 * 180.02562 * 3 2 1 5 5 H 1.48495 * 109.47225 * 299.99859 * 3 2 1 6 6 H 1.48498 * 109.47159 * 60.00298 * 3 2 1 7 7 C 1.37878 * 119.99809 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99550 * 184.94201 * 7 2 1 9 9 C 1.50697 * 120.00298 * 4.93220 * 7 2 1 10 10 H 1.08997 * 109.46932 * 329.58921 * 9 7 2 11 11 C 1.52999 * 109.47207 * 209.58443 * 9 7 2 12 12 C 1.50690 * 109.47194 * 65.00119 * 11 9 7 13 13 O 1.21281 * 120.00185 * 359.72446 * 12 11 9 14 14 N 1.34777 * 120.00232 * 179.97438 * 12 11 9 15 15 C 1.47028 * 125.64567 * 359.41665 * 14 12 11 16 16 C 1.54329 * 107.26597 * 178.85186 * 15 14 12 17 17 C 1.55161 * 103.02150 * 338.13900 * 16 15 14 18 18 H 1.08999 * 111.04040 * 277.22073 * 17 16 15 19 19 N 1.46505 * 111.00598 * 153.38182 * 17 16 15 20 20 C 1.35309 * 125.86734 * 332.80846 * 19 17 16 21 21 C 1.35346 * 106.17385 * 180.02562 * 20 19 17 22 22 N 1.33765 * 106.50010 * 359.97438 * 21 20 19 23 23 N 1.28641 * 108.88548 * 359.73642 * 22 21 20 24 24 C 1.47424 * 125.65109 * 179.72532 * 14 12 11 25 25 C 1.50703 * 109.46780 * 89.58276 * 9 7 2 26 26 C 1.38233 * 119.99716 * 56.77112 * 25 9 7 27 27 C 1.38237 * 119.99940 * 179.76592 * 26 25 9 28 28 C 1.38245 * 119.99672 * 0.50104 * 27 26 25 29 29 C 1.38232 * 119.99816 * 359.75302 * 28 27 26 30 30 C 1.38231 * 120.00141 * 237.03765 * 25 9 7 31 31 H 0.97002 * 120.00144 * 0.02562 * 1 2 3 32 32 H 1.08995 * 109.47119 * 304.99867 * 11 9 7 33 33 H 1.08998 * 109.47039 * 185.00239 * 11 9 7 34 34 H 1.09000 * 109.87761 * 298.39403 * 15 14 12 35 35 H 1.08998 * 109.88160 * 59.56165 * 15 14 12 36 36 H 1.09001 * 110.85039 * 219.67752 * 16 15 14 37 37 H 1.08995 * 110.67385 * 96.51900 * 16 15 14 38 38 H 1.07999 * 126.91503 * 359.97438 * 20 19 17 39 39 H 1.08002 * 126.75147 * 180.02562 * 21 20 19 40 40 H 1.08998 * 110.36662 * 322.92855 * 24 14 12 41 41 H 1.09001 * 110.36698 * 85.25349 * 24 14 12 42 42 H 1.08001 * 120.00272 * 359.97438 * 26 25 9 43 43 H 1.07992 * 120.00555 * 180.22790 * 27 26 25 44 44 H 1.07993 * 119.99698 * 179.72413 * 28 27 26 45 45 H 1.08009 * 120.00010 * 179.97438 * 29 28 27 46 46 H 1.08001 * 119.99843 * 0.02562 * 30 25 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3464 -0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8904 2.3964 1.2125 7 6 2.0044 -1.1941 -0.0005 8 1 3.0815 -1.1958 0.0800 9 6 1.2552 -2.4967 -0.1133 10 1 0.2697 -2.3894 0.3398 11 6 2.0329 -3.5969 0.6117 12 6 2.0799 -3.2904 2.0863 13 8 1.5484 -2.2880 2.5147 14 7 2.7169 -4.1278 2.9287 15 6 3.3946 -5.3755 2.5469 16 6 4.0008 -5.9790 3.8314 17 6 4.1084 -4.7533 4.7766 18 1 5.0140 -4.1813 4.5742 19 7 4.0548 -5.1668 6.1811 20 6 3.4409 -6.2740 6.6586 21 6 3.6371 -6.2659 7.9978 22 7 4.3525 -5.1690 8.2703 23 7 4.5887 -4.5424 7.1720 24 6 2.8441 -3.9476 4.3863 25 6 1.1023 -2.8640 -1.5669 26 6 2.2208 -2.9887 -2.3695 27 6 2.0809 -3.3304 -3.7017 28 6 0.8218 -3.5370 -4.2337 29 6 -0.2969 -3.4071 -3.4323 30 6 -0.1567 -3.0706 -2.0989 31 1 -0.4850 0.8401 -0.0004 32 1 3.0481 -3.6440 0.2178 33 1 1.5378 -4.5552 0.4553 34 1 2.6755 -6.0698 2.1123 35 1 4.1873 -5.1623 1.8298 36 1 4.9861 -6.4014 3.6341 37 1 3.3366 -6.7336 4.2527 38 1 2.9019 -7.0146 6.0865 39 1 3.2858 -7.0010 8.7068 40 1 2.9766 -2.8931 4.6281 41 1 1.9674 -4.3473 4.8959 42 1 3.2042 -2.8227 -1.9551 43 1 2.9549 -3.4315 -4.3279 44 1 0.7123 -3.7996 -5.2755 45 1 -1.2807 -3.5682 -3.8480 46 1 -1.0308 -2.9685 -1.4729 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000603112059.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:03:18 Heat of formation + Delta-G solvation = 101.061710 kcal Electronic energy + Delta-G solvation = -28930.740410 eV Core-core repulsion = 25015.929092 eV Total energy + Delta-G solvation = -3914.811318 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -43.48541 -39.88043 -38.47989 -37.41647 -34.25287 -34.04379 -31.57650 -31.37872 -30.69685 -30.06323 -29.52979 -28.45675 -25.80867 -24.14973 -23.40788 -22.66261 -22.39142 -21.65420 -20.84942 -19.94047 -18.84220 -18.05819 -16.94015 -16.55399 -16.37846 -15.81180 -15.58772 -15.32094 -14.94336 -14.54371 -14.31977 -14.14232 -14.03460 -13.86003 -13.74640 -13.08042 -12.78849 -12.60618 -12.38539 -12.31741 -12.09462 -11.98858 -11.93033 -11.70324 -11.67198 -11.37287 -11.09904 -10.92221 -10.78590 -10.58563 -10.33603 -10.31016 -10.09869 -9.61483 -9.49991 -9.22495 -8.98953 -8.50904 -8.37170 -8.10014 -7.68156 -5.97513 -3.97390 1.35714 1.94248 2.23272 2.28685 2.38717 3.19618 3.32017 3.34630 3.42173 3.43396 3.72492 4.04831 4.21309 4.32914 4.47962 4.65871 4.69019 4.76326 4.78150 4.99525 5.14375 5.22754 5.34072 5.38554 5.43974 5.54361 5.57818 5.61542 5.67554 5.69613 5.79038 5.92559 5.99089 6.09034 6.20181 6.27809 6.35674 6.41307 6.46685 6.71669 6.84890 6.98156 7.25880 7.38430 7.46514 7.77411 7.83392 7.88951 8.00547 8.30684 8.32174 8.84445 9.02170 9.64416 11.12488 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.013208 B = 0.002899 C = 0.002531 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2119.483372 B = 9656.552625 C =11058.547173 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.879 5.879 2 C 0.077 3.923 3 Si 0.885 3.115 4 H -0.274 1.274 5 H -0.285 1.285 6 H -0.285 1.285 7 C -0.494 4.494 8 H 0.051 0.949 9 C 0.078 3.922 10 H 0.073 0.927 11 C -0.114 4.114 12 C 0.531 3.469 13 O -0.481 6.481 14 N -0.636 5.636 15 C 0.108 3.892 16 C -0.138 4.138 17 C 0.126 3.874 18 H 0.131 0.869 19 N -0.278 5.278 20 C -0.049 4.049 21 C -0.053 4.053 22 N -0.274 5.274 23 N -0.081 5.081 24 C 0.106 3.894 25 C -0.023 4.023 26 C -0.114 4.114 27 C -0.132 4.132 28 C -0.154 4.154 29 C -0.128 4.128 30 C -0.119 4.119 31 H 0.259 0.741 32 H 0.078 0.922 33 H 0.066 0.934 34 H 0.077 0.923 35 H 0.076 0.924 36 H 0.097 0.903 37 H 0.089 0.911 38 H 0.190 0.810 39 H 0.190 0.810 40 H 0.092 0.908 41 H 0.069 0.931 42 H 0.113 0.887 43 H 0.106 0.894 44 H 0.104 0.896 45 H 0.106 0.894 46 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.859 -17.589 3.937 18.952 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.516 5.516 2 C -0.126 4.126 3 Si 0.713 3.287 4 H -0.199 1.199 5 H -0.212 1.212 6 H -0.211 1.211 7 C -0.531 4.531 8 H 0.069 0.931 9 C 0.059 3.941 10 H 0.091 0.909 11 C -0.154 4.154 12 C 0.320 3.680 13 O -0.350 6.350 14 N -0.377 5.377 15 C -0.016 4.016 16 C -0.177 4.177 17 C 0.023 3.977 18 H 0.149 0.851 19 N -0.072 5.072 20 C -0.199 4.199 21 C -0.210 4.210 22 N -0.139 5.139 23 N -0.061 5.061 24 C -0.019 4.019 25 C -0.024 4.024 26 C -0.132 4.132 27 C -0.150 4.150 28 C -0.173 4.173 29 C -0.146 4.146 30 C -0.137 4.137 31 H 0.069 0.931 32 H 0.097 0.903 33 H 0.085 0.915 34 H 0.095 0.905 35 H 0.095 0.905 36 H 0.116 0.884 37 H 0.108 0.892 38 H 0.207 0.793 39 H 0.207 0.793 40 H 0.110 0.890 41 H 0.087 0.913 42 H 0.131 0.869 43 H 0.124 0.876 44 H 0.122 0.878 45 H 0.124 0.876 46 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges 6.159 -15.544 4.530 17.323 hybrid contribution -0.186 0.032 -0.546 0.578 sum 5.973 -15.512 3.984 17.093 Atomic orbital electron populations 1.69903 1.05906 1.26342 1.49477 1.24813 0.94670 0.98890 0.94226 0.86660 0.80205 0.84422 0.77421 1.19876 1.21155 1.21081 1.20704 0.92389 0.89614 1.50417 0.93069 1.17854 0.98765 0.91423 0.86072 0.90918 1.21766 1.02616 1.00853 0.90149 1.20808 0.77067 0.81744 0.88372 1.90814 1.42364 1.24450 1.77408 1.48732 1.58355 1.24416 1.06185 1.21905 0.97124 0.86655 0.95951 1.23102 1.03499 0.96249 0.94810 1.22930 1.02384 0.98228 0.74188 0.85097 1.47357 1.34442 1.16436 1.08948 1.23617 1.05324 0.94698 0.96299 1.23619 1.03493 0.99428 0.94475 1.75137 1.14904 1.06065 1.17826 1.78391 1.17813 1.20086 0.89763 1.22251 0.94668 1.01558 0.83412 1.20730 0.91770 0.90732 0.99176 1.20948 0.98983 1.00122 0.93192 1.20985 0.96556 1.01794 0.95692 1.20808 0.93107 1.04612 0.98737 1.20992 0.97613 1.01487 0.94534 1.21099 0.97721 1.00056 0.94829 0.93133 0.90323 0.91518 0.90472 0.90521 0.88449 0.89241 0.79310 0.79347 0.88976 0.91258 0.86862 0.87632 0.87774 0.87610 0.86796 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.49 12.85 55.43 0.71 -24.77 16 2 C 0.08 2.15 5.45 -17.82 -0.10 2.05 16 3 Si 0.88 21.93 29.54 -169.99 -5.02 16.90 16 4 H -0.27 -6.64 7.11 56.52 0.40 -6.24 16 5 H -0.29 -7.03 7.11 56.52 0.40 -6.62 16 6 H -0.28 -7.16 7.11 56.52 0.40 -6.76 16 7 C -0.49 -12.89 6.37 -34.44 -0.22 -13.11 16 8 H 0.05 1.34 7.82 -52.49 -0.41 0.93 16 9 C 0.08 1.78 1.69 -92.92 -0.16 1.62 16 10 H 0.07 1.93 6.95 -51.93 -0.36 1.57 16 11 C -0.11 -2.04 4.14 -27.89 -0.12 -2.15 16 12 C 0.53 9.95 7.60 -10.99 -0.08 9.87 16 13 O -0.48 -11.69 15.23 5.56 0.08 -11.60 16 14 N -0.64 -8.56 3.33 -170.52 -0.57 -9.13 16 15 C 0.11 0.91 6.49 -3.06 -0.02 0.89 16 16 C -0.14 -0.82 6.31 -24.89 -0.16 -0.98 16 17 C 0.13 1.14 4.13 -65.78 -0.27 0.87 16 18 H 0.13 1.17 8.14 -51.93 -0.42 0.74 16 19 N -0.28 -2.89 3.40 -52.68 -0.18 -3.06 16 20 C -0.05 -0.39 10.67 -17.05 -0.18 -0.57 16 21 C -0.05 -0.50 12.05 -17.74 -0.21 -0.71 16 22 N -0.27 -3.65 12.41 30.23 0.38 -3.28 16 23 N -0.08 -1.10 13.17 60.35 0.79 -0.31 16 24 C 0.11 1.31 6.60 -2.53 -0.02 1.29 16 25 C -0.02 -0.49 4.77 -104.62 -0.50 -0.99 16 26 C -0.11 -2.20 8.86 -39.58 -0.35 -2.55 16 27 C -0.13 -2.26 10.05 -39.58 -0.40 -2.66 16 28 C -0.15 -2.58 10.05 -39.58 -0.40 -2.97 16 29 C -0.13 -2.28 10.05 -39.59 -0.40 -2.67 16 30 C -0.12 -2.42 9.67 -39.59 -0.38 -2.80 16 31 H 0.26 7.25 8.31 -40.82 -0.34 6.91 16 32 H 0.08 1.29 7.76 -51.93 -0.40 0.88 16 33 H 0.07 1.03 8.14 -51.93 -0.42 0.60 16 34 H 0.08 0.57 8.14 -51.93 -0.42 0.14 16 35 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 36 H 0.10 0.41 8.14 -51.93 -0.42 -0.01 16 37 H 0.09 0.40 6.23 -51.93 -0.32 0.07 16 38 H 0.19 0.80 6.81 -52.49 -0.36 0.44 16 39 H 0.19 1.09 8.06 -52.49 -0.42 0.66 16 40 H 0.09 1.36 8.04 -51.93 -0.42 0.94 16 41 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 42 H 0.11 2.08 7.75 -52.49 -0.41 1.68 16 43 H 0.11 1.51 8.06 -52.49 -0.42 1.09 16 44 H 0.10 1.44 8.06 -52.49 -0.42 1.02 16 45 H 0.11 1.61 8.06 -52.48 -0.42 1.19 16 46 H 0.11 2.35 7.95 -52.49 -0.42 1.93 16 LS Contribution 384.88 15.07 5.80 5.80 Total: -1.00 -34.85 384.88 -8.42 -43.27 By element: Atomic # 1 Polarization: 8.24 SS G_CDS: -6.46 Total: 1.78 kcal Atomic # 6 Polarization: -11.63 SS G_CDS: -3.96 Total: -15.59 kcal Atomic # 7 Polarization: -41.69 SS G_CDS: 1.14 Total: -40.56 kcal Atomic # 8 Polarization: -11.69 SS G_CDS: 0.08 Total: -11.60 kcal Atomic # 14 Polarization: 21.93 SS G_CDS: -5.02 Total: 16.90 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -34.85 -8.42 -43.27 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000603112059.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 144.330 kcal (2) G-P(sol) polarization free energy of solvation -34.849 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 109.481 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.420 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.269 kcal (6) G-S(sol) free energy of system = (1) + (5) 101.062 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds