Wall clock time and date at job start Sat Apr 11 2020 06:03:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86795 * 119.99952 * 2 1 4 4 H 1.48497 * 109.47120 * 270.00617 * 3 2 1 5 5 H 1.48502 * 109.47084 * 30.00506 * 3 2 1 6 6 H 1.48500 * 109.46979 * 150.00406 * 3 2 1 7 7 C 1.37873 * 119.99736 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99998 * 186.10954 * 7 2 1 9 9 C 1.50700 * 120.00326 * 6.11257 * 7 2 1 10 10 H 1.09001 * 109.47337 * 25.85134 * 9 7 2 11 11 C 1.53002 * 109.47312 * 145.85058 * 9 7 2 12 12 C 1.50707 * 109.47206 * 295.00062 * 11 9 7 13 13 O 1.21285 * 119.99545 * 359.97438 * 12 11 9 14 14 N 1.34773 * 119.99743 * 179.97438 * 12 11 9 15 15 C 1.47019 * 125.65147 * 0.02584 * 14 12 11 16 16 C 1.54324 * 107.26963 * 178.91567 * 15 14 12 17 17 C 1.55157 * 102.94484 * 337.81024 * 16 15 14 18 18 H 1.08994 * 111.00475 * 277.38498 * 17 16 15 19 19 N 1.46502 * 111.00344 * 153.57525 * 17 16 15 20 20 C 1.35320 * 125.86877 * 326.45169 * 19 17 16 21 21 C 1.35344 * 106.17347 * 180.02562 * 20 19 17 22 22 N 1.33772 * 106.49950 * 359.97438 * 21 20 19 23 23 N 1.28628 * 108.88239 * 359.74141 * 22 21 20 24 24 C 1.47431 * 125.64344 * 179.97438 * 14 12 11 25 25 C 1.50702 * 109.47365 * 265.85163 * 9 7 2 26 26 C 1.38233 * 119.99723 * 303.45928 * 25 9 7 27 27 C 1.38235 * 119.99589 * 179.80612 * 26 25 9 28 28 C 1.38228 * 120.00212 * 0.42321 * 27 26 25 29 29 C 1.38236 * 120.00102 * 359.80784 * 28 27 26 30 30 C 1.38231 * 119.99996 * 123.73053 * 25 9 7 31 31 H 0.96995 * 120.00036 * 359.97438 * 1 2 3 32 32 H 1.08997 * 109.47481 * 175.00111 * 11 9 7 33 33 H 1.08997 * 109.47360 * 54.99991 * 11 9 7 34 34 H 1.09003 * 109.88375 * 59.50464 * 15 14 12 35 35 H 1.09001 * 109.88357 * 298.33677 * 15 14 12 36 36 H 1.08998 * 110.72145 * 219.43896 * 16 15 14 37 37 H 1.09005 * 110.86775 * 96.24627 * 16 15 14 38 38 H 1.08003 * 126.90846 * 359.97438 * 20 19 17 39 39 H 1.08002 * 126.74817 * 180.02562 * 21 20 19 40 40 H 1.09003 * 110.36149 * 85.31160 * 24 14 12 41 41 H 1.08998 * 110.36617 * 322.99304 * 24 14 12 42 42 H 1.08001 * 120.00388 * 359.97438 * 26 25 9 43 43 H 1.08005 * 119.99664 * 180.20715 * 27 26 25 44 44 H 1.07998 * 120.00558 * 179.78901 * 28 27 26 45 45 H 1.08003 * 120.00380 * 179.97438 * 29 28 27 46 46 H 1.08004 * 120.00021 * 359.97438 * 30 25 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4965 2.0465 -1.4000 5 1 1.4466 2.6526 0.7002 6 1 3.5468 1.4401 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 3.0800 -1.1968 0.0990 9 6 1.2575 -2.4954 -0.1401 10 1 0.3200 -2.3214 -0.6683 11 6 2.1102 -3.4910 -0.9291 12 6 2.2983 -2.9863 -2.3367 13 8 1.7990 -1.9342 -2.6754 14 7 3.0213 -3.7042 -3.2189 15 6 3.6784 -4.9902 -2.9431 16 6 4.3605 -5.4458 -4.2503 17 6 3.5749 -4.6704 -5.3407 18 1 2.6495 -5.1862 -5.5967 19 7 4.4010 -4.4580 -6.5318 20 6 5.7391 -4.2568 -6.5431 21 6 6.0869 -4.1073 -7.8425 22 7 4.9596 -4.2233 -8.5533 23 7 3.9797 -4.4363 -7.7478 24 6 3.2834 -3.3304 -4.6208 25 6 0.9665 -3.0568 1.2278 26 6 2.0019 -3.2923 2.1128 27 6 1.7346 -3.8036 3.3690 28 6 0.4328 -4.0875 3.7371 29 6 -0.6022 -3.8565 2.8503 30 6 -0.3353 -3.3416 1.5955 31 1 -0.4850 0.8400 0.0004 32 1 1.6093 -4.4587 -0.9541 33 1 3.0826 -3.5975 -0.4484 34 1 2.9364 -5.7272 -2.6358 35 1 4.4255 -4.8642 -2.1594 36 1 4.2512 -6.5216 -4.3876 37 1 5.4130 -5.1625 -4.2582 38 1 6.3970 -4.2218 -5.6873 39 1 7.0796 -3.9301 -8.2295 40 1 4.1491 -2.6709 -4.6819 41 1 2.4072 -2.8491 -5.0551 42 1 3.0195 -3.0744 1.8238 43 1 2.5433 -3.9844 4.0617 44 1 0.2243 -4.4901 4.7172 45 1 -1.6193 -4.0787 3.1377 46 1 -1.1439 -3.1613 0.9026 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000603112061.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:03:20 Heat of formation + Delta-G solvation = 100.328819 kcal Electronic energy + Delta-G solvation = -28944.145902 eV Core-core repulsion = 25029.302803 eV Total energy + Delta-G solvation = -3914.843098 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -43.48707 -39.88929 -38.47124 -37.42154 -34.25575 -34.04330 -31.58408 -31.35751 -30.72004 -30.05185 -29.53381 -28.45173 -25.81463 -24.15147 -23.36711 -22.65604 -22.44710 -21.64974 -20.86150 -19.93164 -18.85319 -18.04266 -16.95088 -16.49929 -16.34489 -15.91761 -15.50126 -15.28944 -15.06590 -14.48960 -14.31230 -14.15270 -14.01025 -13.88059 -13.77695 -13.07166 -12.78517 -12.58245 -12.48198 -12.25992 -12.12197 -11.97213 -11.92447 -11.73402 -11.65773 -11.37725 -11.11634 -10.91349 -10.77675 -10.61266 -10.32889 -10.30117 -10.11370 -9.61410 -9.51375 -9.19663 -9.01756 -8.51452 -8.38594 -8.08745 -7.65803 -5.98659 -3.98903 1.35157 1.93923 2.24516 2.30206 2.38490 3.18024 3.31723 3.35688 3.40679 3.42394 3.75394 4.02519 4.21120 4.33189 4.47584 4.65161 4.70427 4.75202 4.79174 4.99906 5.14917 5.22081 5.33295 5.38873 5.43913 5.53638 5.57745 5.62498 5.67741 5.68538 5.79813 5.92558 5.99232 6.09202 6.20507 6.27769 6.36749 6.40780 6.47316 6.72913 6.85782 6.99516 7.27041 7.38604 7.46724 7.76776 7.80261 7.90197 8.00464 8.30164 8.31735 8.83311 9.01129 9.63821 11.11447 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.012892 B = 0.002934 C = 0.002559 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2171.303119 B = 9540.145434 C =10939.371606 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.880 5.880 2 C 0.080 3.920 3 Si 0.886 3.114 4 H -0.280 1.280 5 H -0.288 1.288 6 H -0.276 1.276 7 C -0.496 4.496 8 H 0.050 0.950 9 C 0.079 3.921 10 H 0.072 0.928 11 C -0.115 4.115 12 C 0.532 3.468 13 O -0.484 6.484 14 N -0.636 5.636 15 C 0.108 3.892 16 C -0.138 4.138 17 C 0.126 3.874 18 H 0.132 0.868 19 N -0.279 5.279 20 C -0.047 4.047 21 C -0.053 4.053 22 N -0.273 5.273 23 N -0.082 5.082 24 C 0.105 3.895 25 C -0.021 4.021 26 C -0.115 4.115 27 C -0.132 4.132 28 C -0.155 4.155 29 C -0.128 4.128 30 C -0.118 4.118 31 H 0.260 0.740 32 H 0.067 0.933 33 H 0.078 0.922 34 H 0.076 0.924 35 H 0.078 0.922 36 H 0.096 0.904 37 H 0.089 0.911 38 H 0.190 0.810 39 H 0.190 0.810 40 H 0.070 0.930 41 H 0.091 0.909 42 H 0.112 0.888 43 H 0.105 0.895 44 H 0.104 0.896 45 H 0.106 0.894 46 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.006 -14.302 -4.527 18.032 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.516 5.516 2 C -0.124 4.124 3 Si 0.714 3.286 4 H -0.207 1.207 5 H -0.214 1.214 6 H -0.201 1.201 7 C -0.533 4.533 8 H 0.068 0.932 9 C 0.060 3.940 10 H 0.090 0.910 11 C -0.155 4.155 12 C 0.321 3.679 13 O -0.353 6.353 14 N -0.377 5.377 15 C -0.016 4.016 16 C -0.177 4.177 17 C 0.023 3.977 18 H 0.150 0.850 19 N -0.072 5.072 20 C -0.198 4.198 21 C -0.210 4.210 22 N -0.139 5.139 23 N -0.062 5.062 24 C -0.019 4.019 25 C -0.022 4.022 26 C -0.134 4.134 27 C -0.150 4.150 28 C -0.173 4.173 29 C -0.146 4.146 30 C -0.137 4.137 31 H 0.070 0.930 32 H 0.085 0.915 33 H 0.096 0.904 34 H 0.094 0.906 35 H 0.096 0.904 36 H 0.115 0.885 37 H 0.108 0.892 38 H 0.207 0.793 39 H 0.207 0.793 40 H 0.089 0.911 41 H 0.109 0.891 42 H 0.130 0.870 43 H 0.123 0.877 44 H 0.122 0.878 45 H 0.124 0.876 46 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges 8.230 -13.609 -5.553 16.845 hybrid contribution 1.541 1.148 0.957 2.146 sum 9.771 -12.461 -4.596 16.489 Atomic orbital electron populations 1.69905 1.05940 1.26527 1.49272 1.24802 0.94655 0.98859 0.94054 0.86707 0.79862 0.84006 0.78031 1.20659 1.21412 1.20092 1.20671 0.92401 0.89597 1.50660 0.93152 1.17850 0.97516 0.91381 0.87215 0.90969 1.21800 1.02437 1.00056 0.91192 1.20812 0.76641 0.83754 0.86663 1.90804 1.45706 1.20951 1.77817 1.48725 1.55242 1.23121 1.10564 1.21906 0.97082 0.86294 0.96358 1.23105 1.00359 1.01328 0.92869 1.22917 0.94934 0.98935 0.80932 0.85049 1.47349 1.06870 1.45451 1.07545 1.23622 0.85802 1.09071 1.01295 1.23619 0.99744 1.07375 0.90250 1.75128 0.96990 1.15936 1.25861 1.78364 1.22213 1.19123 0.86472 1.22255 1.02941 0.93661 0.83089 1.20703 0.91989 0.90509 0.99002 1.20934 0.99350 0.99602 0.93474 1.20972 0.96081 1.01248 0.96666 1.20799 0.93341 1.04183 0.98999 1.20990 0.98004 1.00916 0.94663 1.21090 0.97071 0.99293 0.96213 0.93046 0.91461 0.90372 0.90555 0.90415 0.88501 0.89234 0.79322 0.79337 0.91148 0.89086 0.86951 0.87667 0.87792 0.87618 0.86827 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.45 12.87 55.43 0.71 -24.74 16 2 C 0.08 2.22 5.45 -17.82 -0.10 2.12 16 3 Si 0.89 21.95 29.54 -169.99 -5.02 16.93 16 4 H -0.28 -7.09 7.11 56.52 0.40 -6.69 16 5 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 6 H -0.28 -6.65 7.11 56.52 0.40 -6.24 16 7 C -0.50 -12.92 6.37 -34.44 -0.22 -13.14 16 8 H 0.05 1.31 7.82 -52.48 -0.41 0.89 16 9 C 0.08 1.81 1.67 -92.92 -0.16 1.66 16 10 H 0.07 1.92 6.98 -51.93 -0.36 1.55 16 11 C -0.11 -2.05 4.14 -27.88 -0.12 -2.17 16 12 C 0.53 9.93 7.60 -10.98 -0.08 9.84 16 13 O -0.48 -11.67 15.24 5.55 0.08 -11.59 16 14 N -0.64 -8.51 3.33 -170.53 -0.57 -9.08 16 15 C 0.11 0.90 6.49 -3.07 -0.02 0.88 16 16 C -0.14 -0.83 6.38 -24.90 -0.16 -0.99 16 17 C 0.13 1.11 4.08 -65.79 -0.27 0.85 16 18 H 0.13 1.11 8.14 -51.93 -0.42 0.69 16 19 N -0.28 -2.88 3.37 -52.69 -0.18 -3.06 16 20 C -0.05 -0.39 10.66 -17.05 -0.18 -0.57 16 21 C -0.05 -0.50 12.05 -17.74 -0.21 -0.72 16 22 N -0.27 -3.64 12.41 30.23 0.38 -3.26 16 23 N -0.08 -1.10 13.16 60.35 0.79 -0.31 16 24 C 0.11 1.28 6.60 -2.54 -0.02 1.27 16 25 C -0.02 -0.45 4.77 -104.63 -0.50 -0.95 16 26 C -0.12 -2.22 8.86 -39.58 -0.35 -2.58 16 27 C -0.13 -2.26 10.05 -39.59 -0.40 -2.65 16 28 C -0.16 -2.60 10.05 -39.59 -0.40 -2.99 16 29 C -0.13 -2.27 10.05 -39.58 -0.40 -2.67 16 30 C -0.12 -2.42 9.67 -39.58 -0.38 -2.80 16 31 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16 32 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 33 H 0.08 1.28 7.77 -51.93 -0.40 0.87 16 34 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 35 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 36 H 0.10 0.42 8.14 -51.93 -0.42 -0.01 16 37 H 0.09 0.43 6.39 -51.93 -0.33 0.10 16 38 H 0.19 0.89 7.02 -52.48 -0.37 0.52 16 39 H 0.19 1.13 8.06 -52.49 -0.42 0.71 16 40 H 0.07 0.88 8.14 -51.93 -0.42 0.45 16 41 H 0.09 1.30 8.04 -51.93 -0.42 0.88 16 42 H 0.11 2.07 7.76 -52.49 -0.41 1.67 16 43 H 0.11 1.51 8.06 -52.48 -0.42 1.09 16 44 H 0.10 1.45 8.06 -52.49 -0.42 1.02 16 45 H 0.11 1.61 8.06 -52.48 -0.42 1.19 16 46 H 0.11 2.35 7.95 -52.48 -0.42 1.93 16 LS Contribution 385.29 15.07 5.81 5.81 Total: -1.00 -34.68 385.29 -8.43 -43.11 By element: Atomic # 1 Polarization: 8.28 SS G_CDS: -6.48 Total: 1.80 kcal Atomic # 6 Polarization: -11.65 SS G_CDS: -3.96 Total: -15.61 kcal Atomic # 7 Polarization: -41.58 SS G_CDS: 1.14 Total: -40.44 kcal Atomic # 8 Polarization: -11.67 SS G_CDS: 0.08 Total: -11.59 kcal Atomic # 14 Polarization: 21.95 SS G_CDS: -5.02 Total: 16.93 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -34.68 -8.43 -43.11 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000603112061.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 143.437 kcal (2) G-P(sol) polarization free energy of solvation -34.678 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 108.759 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.431 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.108 kcal (6) G-S(sol) free energy of system = (1) + (5) 100.329 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds