Wall clock time and date at job start Sat Apr 11 2020 06:03:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86795 * 119.99952 * 2 1 4 4 H 1.48497 * 109.47120 * 270.00617 * 3 2 1 5 5 H 1.48502 * 109.47084 * 30.00506 * 3 2 1 6 6 H 1.48500 * 109.46979 * 150.00406 * 3 2 1 7 7 C 1.37873 * 119.99736 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99998 * 186.10954 * 7 2 1 9 9 C 1.50700 * 120.00326 * 6.11257 * 7 2 1 10 10 H 1.09001 * 109.47337 * 25.85134 * 9 7 2 11 11 C 1.53002 * 109.47312 * 145.85058 * 9 7 2 12 12 C 1.50707 * 109.47206 * 295.00062 * 11 9 7 13 13 O 1.21285 * 119.99545 * 359.97438 * 12 11 9 14 14 N 1.34773 * 119.99743 * 179.97438 * 12 11 9 15 15 C 1.47019 * 125.65147 * 0.02584 * 14 12 11 16 16 C 1.54324 * 107.26963 * 178.91567 * 15 14 12 17 17 C 1.55157 * 102.94484 * 337.81024 * 16 15 14 18 18 H 1.08994 * 111.00475 * 277.38498 * 17 16 15 19 19 N 1.46502 * 111.00344 * 153.57525 * 17 16 15 20 20 C 1.35320 * 125.86877 * 326.45169 * 19 17 16 21 21 C 1.35344 * 106.17347 * 180.02562 * 20 19 17 22 22 N 1.33772 * 106.49950 * 359.97438 * 21 20 19 23 23 N 1.28628 * 108.88239 * 359.74141 * 22 21 20 24 24 C 1.47431 * 125.64344 * 179.97438 * 14 12 11 25 25 C 1.50702 * 109.47365 * 265.85163 * 9 7 2 26 26 C 1.38233 * 119.99723 * 303.45928 * 25 9 7 27 27 C 1.38235 * 119.99589 * 179.80612 * 26 25 9 28 28 C 1.38228 * 120.00212 * 0.42321 * 27 26 25 29 29 C 1.38236 * 120.00102 * 359.80784 * 28 27 26 30 30 C 1.38231 * 119.99996 * 123.73053 * 25 9 7 31 31 H 0.96995 * 120.00036 * 359.97438 * 1 2 3 32 32 H 1.08997 * 109.47481 * 175.00111 * 11 9 7 33 33 H 1.08997 * 109.47360 * 54.99991 * 11 9 7 34 34 H 1.09003 * 109.88375 * 59.50464 * 15 14 12 35 35 H 1.09001 * 109.88357 * 298.33677 * 15 14 12 36 36 H 1.08998 * 110.72145 * 219.43896 * 16 15 14 37 37 H 1.09005 * 110.86775 * 96.24627 * 16 15 14 38 38 H 1.08003 * 126.90846 * 359.97438 * 20 19 17 39 39 H 1.08002 * 126.74817 * 180.02562 * 21 20 19 40 40 H 1.09003 * 110.36149 * 85.31160 * 24 14 12 41 41 H 1.08998 * 110.36617 * 322.99304 * 24 14 12 42 42 H 1.08001 * 120.00388 * 359.97438 * 26 25 9 43 43 H 1.08005 * 119.99664 * 180.20715 * 27 26 25 44 44 H 1.07998 * 120.00558 * 179.78901 * 28 27 26 45 45 H 1.08003 * 120.00380 * 179.97438 * 29 28 27 46 46 H 1.08004 * 120.00021 * 359.97438 * 30 25 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4965 2.0465 -1.4000 5 1 1.4466 2.6526 0.7002 6 1 3.5468 1.4401 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 3.0800 -1.1968 0.0990 9 6 1.2575 -2.4954 -0.1401 10 1 0.3200 -2.3214 -0.6683 11 6 2.1102 -3.4910 -0.9291 12 6 2.2983 -2.9863 -2.3367 13 8 1.7990 -1.9342 -2.6754 14 7 3.0213 -3.7042 -3.2189 15 6 3.6784 -4.9902 -2.9431 16 6 4.3605 -5.4458 -4.2503 17 6 3.5749 -4.6704 -5.3407 18 1 2.6495 -5.1862 -5.5967 19 7 4.4010 -4.4580 -6.5318 20 6 5.7391 -4.2568 -6.5431 21 6 6.0869 -4.1073 -7.8425 22 7 4.9596 -4.2233 -8.5533 23 7 3.9797 -4.4363 -7.7478 24 6 3.2834 -3.3304 -4.6208 25 6 0.9665 -3.0568 1.2278 26 6 2.0019 -3.2923 2.1128 27 6 1.7346 -3.8036 3.3690 28 6 0.4328 -4.0875 3.7371 29 6 -0.6022 -3.8565 2.8503 30 6 -0.3353 -3.3416 1.5955 31 1 -0.4850 0.8400 0.0004 32 1 1.6093 -4.4587 -0.9541 33 1 3.0826 -3.5975 -0.4484 34 1 2.9364 -5.7272 -2.6358 35 1 4.4255 -4.8642 -2.1594 36 1 4.2512 -6.5216 -4.3876 37 1 5.4130 -5.1625 -4.2582 38 1 6.3970 -4.2218 -5.6873 39 1 7.0796 -3.9301 -8.2295 40 1 4.1491 -2.6709 -4.6819 41 1 2.4072 -2.8491 -5.0551 42 1 3.0195 -3.0744 1.8238 43 1 2.5433 -3.9844 4.0617 44 1 0.2243 -4.4901 4.7172 45 1 -1.6193 -4.0787 3.1377 46 1 -1.1439 -3.1613 0.9026 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000603112061.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:03:19 Heat of formation + Delta-G solvation = 78.258813 kcal Electronic energy + Delta-G solvation = -28945.102929 eV Core-core repulsion = 25029.302803 eV Total energy + Delta-G solvation = -3915.800126 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -44.26983 -41.08224 -39.87129 -38.66530 -35.79698 -35.18444 -33.42942 -32.17503 -31.67094 -31.47528 -30.60642 -29.63910 -27.53110 -25.45738 -24.15932 -23.98200 -23.31791 -23.08389 -21.64538 -21.38222 -20.10176 -18.86391 -18.53055 -18.02476 -17.33432 -17.16187 -16.70207 -16.48608 -16.18863 -15.98567 -15.64082 -15.41457 -15.20694 -14.93648 -14.61425 -14.36824 -14.18364 -13.92704 -13.76704 -13.55934 -13.41371 -13.18783 -13.05550 -12.88529 -12.87636 -12.70862 -12.53453 -12.46481 -11.98145 -11.90577 -11.81369 -11.68642 -11.31483 -11.15818 -10.95808 -10.70230 -10.39282 -10.36544 -9.64823 -9.52023 -9.17633 -8.05724 -6.07988 0.59094 0.80024 0.85630 1.18101 1.33508 1.38562 1.42485 1.61790 1.88103 2.12806 2.44589 3.06450 3.19718 3.22349 3.36212 3.57529 3.69895 3.97511 4.01541 4.12438 4.19772 4.26818 4.31943 4.37554 4.41116 4.43276 4.54118 4.57120 4.64519 4.68143 4.76868 4.79626 4.87084 4.95074 5.00063 5.02902 5.19723 5.26131 5.33622 5.40252 5.54296 5.63110 5.64890 5.78198 5.86140 5.96814 6.17547 6.41443 6.48148 6.54982 7.00915 7.44041 7.49647 7.55594 9.04007 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.012892 B = 0.002934 C = 0.002559 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2171.303119 B = 9540.145434 C =10939.371606 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.918 5.918 2 C 0.024 3.976 3 Si 0.931 3.069 4 H -0.293 1.293 5 H -0.288 1.288 6 H -0.259 1.259 7 C -0.484 4.484 8 H 0.050 0.950 9 C 0.081 3.919 10 H 0.021 0.979 11 C -0.105 4.105 12 C 0.528 3.472 13 O -0.557 6.557 14 N -0.628 5.628 15 C 0.097 3.903 16 C -0.119 4.119 17 C 0.134 3.866 18 H 0.132 0.868 19 N -0.279 5.279 20 C -0.032 4.032 21 C -0.061 4.061 22 N -0.311 5.311 23 N -0.129 5.129 24 C 0.103 3.897 25 C -0.045 4.045 26 C -0.125 4.125 27 C -0.125 4.125 28 C -0.148 4.148 29 C -0.129 4.129 30 C -0.144 4.144 31 H 0.252 0.748 32 H 0.094 0.906 33 H 0.102 0.898 34 H 0.093 0.907 35 H 0.097 0.903 36 H 0.127 0.873 37 H 0.113 0.887 38 H 0.232 0.768 39 H 0.220 0.780 40 H 0.069 0.931 41 H 0.056 0.944 42 H 0.119 0.881 43 H 0.142 0.858 44 H 0.142 0.858 45 H 0.129 0.871 46 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.334 -17.281 -2.200 21.938 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.558 5.558 2 C -0.175 4.175 3 Si 0.759 3.241 4 H -0.220 1.220 5 H -0.214 1.214 6 H -0.183 1.183 7 C -0.522 4.522 8 H 0.068 0.932 9 C 0.062 3.938 10 H 0.039 0.961 11 C -0.145 4.145 12 C 0.318 3.682 13 O -0.432 6.432 14 N -0.366 5.366 15 C -0.025 4.025 16 C -0.158 4.158 17 C 0.031 3.969 18 H 0.150 0.850 19 N -0.073 5.073 20 C -0.183 4.183 21 C -0.219 4.219 22 N -0.176 5.176 23 N -0.107 5.107 24 C -0.022 4.022 25 C -0.045 4.045 26 C -0.143 4.143 27 C -0.143 4.143 28 C -0.166 4.166 29 C -0.147 4.147 30 C -0.163 4.163 31 H 0.061 0.939 32 H 0.113 0.887 33 H 0.120 0.880 34 H 0.111 0.889 35 H 0.115 0.885 36 H 0.145 0.855 37 H 0.131 0.869 38 H 0.248 0.752 39 H 0.237 0.763 40 H 0.088 0.912 41 H 0.074 0.926 42 H 0.137 0.863 43 H 0.159 0.841 44 H 0.160 0.840 45 H 0.147 0.853 46 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 11.602 -16.659 -3.240 20.558 hybrid contribution 0.576 1.960 0.246 2.057 sum 12.178 -14.699 -2.994 19.322 Atomic orbital electron populations 1.70050 1.07159 1.26304 1.52239 1.25469 0.95261 1.01684 0.95092 0.85976 0.79595 0.81345 0.77229 1.22012 1.21411 1.18300 1.21010 0.92370 0.90978 1.47844 0.93199 1.17634 0.95643 0.91812 0.88709 0.96083 1.21632 1.02835 0.99659 0.90332 1.20934 0.76497 0.83195 0.87570 1.90779 1.48998 1.24288 1.79175 1.48512 1.53609 1.24225 1.10242 1.22344 0.97885 0.83817 0.98427 1.23161 1.00700 1.02487 0.89413 1.22854 0.96004 0.96931 0.81109 0.84999 1.47457 1.07800 1.45016 1.06993 1.24323 0.85149 1.06587 1.02257 1.24272 1.00121 1.06798 0.90710 1.75072 0.98361 1.16972 1.27176 1.78334 1.23034 1.21598 0.87731 1.22234 1.01390 0.95759 0.82790 1.20525 0.93076 0.92561 0.98368 1.21039 0.98927 1.00132 0.94226 1.21375 0.97476 0.99394 0.96071 1.21258 0.92689 1.02529 1.00079 1.21272 0.99926 0.99924 0.93573 1.21094 0.96426 1.01209 0.97525 0.93864 0.88733 0.88015 0.88893 0.88499 0.85473 0.86909 0.75169 0.76323 0.91236 0.92555 0.86342 0.84054 0.83987 0.85268 0.89055 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -56.36 12.87 21.45 0.28 -56.09 16 2 C 0.02 1.36 5.45 84.65 0.46 1.82 16 3 Si 0.93 46.44 29.54 68.60 2.03 48.47 16 4 H -0.29 -15.06 7.11 99.48 0.71 -14.35 16 5 H -0.29 -14.20 7.11 99.48 0.71 -13.49 16 6 H -0.26 -12.03 7.11 99.48 0.71 -11.33 16 7 C -0.48 -25.95 6.37 25.60 0.16 -25.78 16 8 H 0.05 2.60 7.82 -2.91 -0.02 2.58 16 9 C 0.08 3.85 1.67 -12.28 -0.02 3.83 16 10 H 0.02 1.20 6.98 -2.39 -0.02 1.18 16 11 C -0.10 -3.72 4.14 29.85 0.12 -3.60 16 12 C 0.53 20.21 7.60 87.66 0.67 20.87 16 13 O -0.56 -28.77 15.24 -3.04 -0.05 -28.82 16 14 N -0.63 -16.34 3.33 -811.81 -2.70 -19.04 16 15 C 0.10 1.28 6.49 86.73 0.56 1.84 16 16 C -0.12 -0.90 6.38 31.78 0.20 -0.70 16 17 C 0.13 2.15 4.08 46.38 0.19 2.33 16 18 H 0.13 2.11 8.14 -2.39 -0.02 2.09 16 19 N -0.28 -5.34 3.37 -320.62 -1.08 -6.42 16 20 C -0.03 -0.44 10.66 83.49 0.89 0.45 16 21 C -0.06 -1.05 12.05 83.73 1.01 -0.04 16 22 N -0.31 -8.20 12.41 -58.26 -0.72 -8.92 16 23 N -0.13 -3.46 13.16 37.02 0.49 -2.97 16 24 C 0.10 2.54 6.60 86.85 0.57 3.11 16 25 C -0.04 -1.91 4.77 -19.87 -0.09 -2.00 16 26 C -0.13 -4.57 8.86 22.27 0.20 -4.37 16 27 C -0.13 -3.81 10.05 22.27 0.22 -3.58 16 28 C -0.15 -4.36 10.05 22.27 0.22 -4.14 16 29 C -0.13 -4.37 10.05 22.27 0.22 -4.14 16 30 C -0.14 -6.00 9.67 22.27 0.22 -5.79 16 31 H 0.25 15.09 8.31 -92.71 -0.77 14.32 16 32 H 0.09 2.80 8.14 -2.39 -0.02 2.78 16 33 H 0.10 3.11 7.77 -2.39 -0.02 3.09 16 34 H 0.09 0.99 8.14 -2.39 -0.02 0.97 16 35 H 0.10 1.02 8.14 -2.39 -0.02 1.00 16 36 H 0.13 0.36 8.14 -2.39 -0.02 0.34 16 37 H 0.11 0.40 6.39 -2.38 -0.02 0.38 16 38 H 0.23 0.94 7.02 -2.91 -0.02 0.92 16 39 H 0.22 2.00 8.06 -2.91 -0.02 1.98 16 40 H 0.07 1.72 8.14 -2.39 -0.02 1.70 16 41 H 0.06 1.77 8.04 -2.39 -0.02 1.75 16 42 H 0.12 4.09 7.76 -2.91 -0.02 4.06 16 43 H 0.14 3.28 8.06 -2.91 -0.02 3.25 16 44 H 0.14 3.15 8.06 -2.91 -0.02 3.12 16 45 H 0.13 3.67 8.06 -2.91 -0.02 3.64 16 46 H 0.09 4.08 7.95 -2.91 -0.02 4.05 16 Total: -1.00 -84.66 385.29 5.03 -79.63 By element: Atomic # 1 Polarization: 13.07 SS G_CDS: 0.98 Total: 14.05 kcal Atomic # 6 Polarization: -25.70 SS G_CDS: 5.81 Total: -19.89 kcal Atomic # 7 Polarization: -89.70 SS G_CDS: -3.74 Total: -93.44 kcal Atomic # 8 Polarization: -28.77 SS G_CDS: -0.05 Total: -28.82 kcal Atomic # 14 Polarization: 46.44 SS G_CDS: 2.03 Total: 48.47 kcal Total: -84.66 5.03 -79.63 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000603112061.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 157.891 kcal (2) G-P(sol) polarization free energy of solvation -84.661 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 73.230 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.029 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.632 kcal (6) G-S(sol) free energy of system = (1) + (5) 78.259 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds