Wall clock time and date at job start Sat Apr 11 2020 06:03:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86792 * 119.99592 * 2 1 4 4 H 1.48504 * 109.47390 * 180.02562 * 3 2 1 5 5 H 1.48501 * 109.47637 * 300.00583 * 3 2 1 6 6 H 1.48501 * 109.47284 * 60.00093 * 3 2 1 7 7 C 1.37872 * 120.00339 * 180.02562 * 2 1 3 8 8 H 1.07993 * 120.00077 * 184.76841 * 7 2 1 9 9 C 1.50701 * 119.99955 * 4.76956 * 7 2 1 10 10 H 1.09003 * 109.47479 * 174.68496 * 9 7 2 11 11 C 1.53004 * 109.47378 * 54.68327 * 9 7 2 12 12 C 1.50700 * 109.46990 * 64.99994 * 11 9 7 13 13 O 1.21283 * 119.99874 * 0.02562 * 12 11 9 14 14 N 1.34776 * 119.99869 * 180.02562 * 12 11 9 15 15 C 1.47022 * 125.64824 * 0.02562 * 14 12 11 16 16 C 1.54320 * 107.27195 * 181.02651 * 15 14 12 17 17 C 1.55161 * 102.94289 * 22.18935 * 16 15 14 18 18 H 1.08997 * 111.00229 * 82.57715 * 17 16 15 19 19 N 1.46498 * 111.00438 * 206.42798 * 17 16 15 20 20 C 1.35308 * 125.86833 * 33.25885 * 19 17 16 21 21 C 1.35355 * 106.17469 * 179.90541 * 20 19 17 22 22 N 1.33775 * 106.49474 * 0.35394 * 21 20 19 23 23 N 1.28636 * 108.88520 * 359.77395 * 22 21 20 24 24 C 1.47419 * 125.64794 * 179.71953 * 14 12 11 25 25 C 1.50707 * 109.47194 * 294.68608 * 9 7 2 26 26 C 1.38226 * 120.00245 * 91.57124 * 25 9 7 27 27 C 1.38236 * 119.99944 * 179.97438 * 26 25 9 28 28 C 1.38233 * 119.99965 * 359.97438 * 27 26 25 29 29 C 1.38236 * 120.00086 * 0.27754 * 28 27 26 30 30 C 1.38232 * 119.99857 * 359.51140 * 29 28 27 31 31 H 0.97001 * 120.00627 * 359.97438 * 1 2 3 32 32 H 1.09000 * 109.47209 * 185.00395 * 11 9 7 33 33 H 1.08999 * 109.46691 * 305.00101 * 11 9 7 34 34 H 1.09004 * 109.87938 * 300.43871 * 15 14 12 35 35 H 1.08997 * 109.88836 * 61.60220 * 15 14 12 36 36 H 1.09003 * 110.72644 * 140.55472 * 16 15 14 37 37 H 1.08996 * 110.71941 * 263.64961 * 16 15 14 38 38 H 1.08004 * 126.91672 * 0.02562 * 20 19 17 39 39 H 1.08004 * 126.75256 * 180.12780 * 21 20 19 40 40 H 1.09002 * 110.36556 * 274.74151 * 24 14 12 41 41 H 1.08996 * 110.36878 * 37.06462 * 24 14 12 42 42 H 1.07995 * 120.00229 * 359.97438 * 26 25 9 43 43 H 1.08001 * 119.99940 * 180.02562 * 27 26 25 44 44 H 1.08006 * 120.00128 * 180.02562 * 28 27 26 45 45 H 1.08002 * 120.00069 * 179.72180 * 29 28 27 46 46 H 1.08001 * 119.99956 * 180.27028 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3465 -0.0006 5 1 1.8902 2.3966 -1.2124 6 1 1.8903 2.3964 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0818 -1.1956 0.0772 9 6 1.2551 -2.4968 -0.1096 10 1 1.9659 -3.3195 -0.1885 11 6 0.3652 -2.4707 -1.3540 12 6 1.2284 -2.4028 -2.5875 13 8 2.4363 -2.3783 -2.4817 14 7 0.6579 -2.3693 -3.8081 15 6 -0.7868 -2.3926 -4.0796 16 6 -0.9655 -2.3645 -5.6122 17 6 0.3962 -2.8980 -6.1306 18 1 0.4213 -3.9875 -6.1126 19 7 0.6816 -2.3904 -7.4749 20 6 0.3205 -1.1793 -7.9583 21 6 0.7851 -1.1265 -9.2285 22 7 1.3927 -2.2956 -9.4596 23 7 1.3140 -3.0222 -8.4010 24 6 1.3791 -2.2970 -5.0918 25 6 0.3993 -2.6882 1.1160 26 6 -0.9080 -2.2390 1.1232 27 6 -1.6931 -2.4150 2.2472 28 6 -1.1711 -3.0407 3.3638 29 6 0.1378 -3.4852 3.3585 30 6 0.9216 -3.3131 2.2330 31 1 -0.4851 0.8400 0.0004 32 1 -0.2426 -3.3749 -1.3851 33 1 -0.2852 -1.5968 -1.3171 34 1 -1.2260 -3.3031 -3.6719 35 1 -1.2618 -1.5181 -3.6349 36 1 -1.7790 -3.0224 -5.9179 37 1 -1.1423 -1.3472 -5.9613 38 1 -0.2265 -0.4088 -7.4352 39 1 0.6819 -0.3038 -9.9207 40 1 1.6097 -1.2609 -5.3395 41 1 2.2927 -2.8898 -5.0476 42 1 -1.3160 -1.7506 0.2506 43 1 -2.7146 -2.0645 2.2527 44 1 -1.7847 -3.1786 4.2419 45 1 0.5470 -3.9700 4.2326 46 1 1.9429 -3.6643 2.2273 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000603112062.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:03:22 Heat of formation + Delta-G solvation = 88.070882 kcal Electronic energy + Delta-G solvation = -29374.014079 eV Core-core repulsion = 25458.639437 eV Total energy + Delta-G solvation = -3915.374642 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -44.27191 -41.07347 -39.84452 -38.62872 -36.04831 -35.17020 -32.98781 -32.18010 -31.68336 -31.36894 -30.47899 -29.55254 -27.73798 -25.41665 -24.15173 -23.98111 -23.32307 -22.91564 -21.64551 -21.42327 -20.10798 -18.87414 -18.35561 -17.87578 -17.30991 -17.14683 -16.88041 -16.54236 -16.10496 -15.98135 -15.50569 -15.24970 -15.21349 -14.95126 -14.67180 -14.56707 -13.98565 -13.84469 -13.74864 -13.35594 -13.25600 -13.13981 -13.03466 -12.88599 -12.82606 -12.72399 -12.69708 -12.26472 -11.99770 -11.91648 -11.86537 -11.69880 -11.16038 -11.07544 -11.05018 -10.66727 -10.36967 -10.33817 -9.64179 -9.38656 -9.11322 -7.95993 -6.11327 0.58337 0.90000 1.01206 1.17797 1.32339 1.37478 1.47730 1.61022 1.91128 2.18137 2.43920 3.05767 3.17951 3.22246 3.38456 3.56852 3.69207 3.97322 4.08035 4.13147 4.19275 4.31175 4.33892 4.41673 4.43818 4.52525 4.55764 4.66775 4.70346 4.79506 4.80693 4.86256 4.88814 5.01562 5.09184 5.15090 5.25368 5.28152 5.42511 5.54625 5.62413 5.63593 5.68672 5.89519 5.96124 6.10338 6.35129 6.42048 6.57379 6.59530 6.82705 7.44149 7.48885 7.51396 8.93267 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.015073 B = 0.002992 C = 0.002740 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1857.164803 B = 9355.717674 C =10216.971711 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.881 5.881 2 C 0.040 3.960 3 Si 0.924 3.076 4 H -0.292 1.292 5 H -0.278 1.278 6 H -0.279 1.279 7 C -0.493 4.493 8 H 0.023 0.977 9 C 0.087 3.913 10 H 0.011 0.989 11 C -0.118 4.118 12 C 0.536 3.464 13 O -0.572 6.572 14 N -0.629 5.629 15 C 0.099 3.901 16 C -0.120 4.120 17 C 0.136 3.864 18 H 0.138 0.862 19 N -0.279 5.279 20 C -0.035 4.035 21 C -0.060 4.060 22 N -0.309 5.309 23 N -0.125 5.125 24 C 0.103 3.897 25 C -0.052 4.052 26 C -0.079 4.079 27 C -0.145 4.145 28 C -0.149 4.149 29 C -0.141 4.141 30 C -0.153 4.153 31 H 0.263 0.737 32 H 0.079 0.921 33 H 0.129 0.871 34 H 0.094 0.906 35 H 0.084 0.916 36 H 0.129 0.871 37 H 0.108 0.892 38 H 0.227 0.773 39 H 0.220 0.780 40 H 0.065 0.935 41 H 0.063 0.937 42 H 0.135 0.865 43 H 0.129 0.871 44 H 0.135 0.865 45 H 0.130 0.870 46 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.883 -2.544 -9.258 15.277 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.520 5.520 2 C -0.160 4.160 3 Si 0.752 3.248 4 H -0.218 1.218 5 H -0.203 1.203 6 H -0.205 1.205 7 C -0.531 4.531 8 H 0.041 0.959 9 C 0.068 3.932 10 H 0.030 0.970 11 C -0.157 4.157 12 C 0.328 3.672 13 O -0.450 6.450 14 N -0.365 5.365 15 C -0.023 4.023 16 C -0.158 4.158 17 C 0.034 3.966 18 H 0.155 0.845 19 N -0.072 5.072 20 C -0.186 4.186 21 C -0.217 4.217 22 N -0.174 5.174 23 N -0.103 5.103 24 C -0.022 4.022 25 C -0.053 4.053 26 C -0.097 4.097 27 C -0.163 4.163 28 C -0.167 4.167 29 C -0.159 4.159 30 C -0.171 4.171 31 H 0.073 0.927 32 H 0.097 0.903 33 H 0.146 0.854 34 H 0.112 0.888 35 H 0.102 0.898 36 H 0.147 0.853 37 H 0.126 0.874 38 H 0.244 0.756 39 H 0.237 0.763 40 H 0.083 0.917 41 H 0.082 0.918 42 H 0.153 0.847 43 H 0.147 0.853 44 H 0.153 0.847 45 H 0.148 0.852 46 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -10.602 -3.727 -9.494 14.712 hybrid contribution 0.898 2.123 0.518 2.363 sum -9.704 -1.604 -8.976 13.316 Atomic orbital electron populations 1.69726 1.05072 1.26335 1.50878 1.25133 0.95752 0.99846 0.95226 0.86038 0.78813 0.82205 0.77705 1.21833 1.20338 1.20523 1.20964 0.91839 0.91558 1.48741 0.95872 1.17544 0.91963 0.94598 0.89096 0.97006 1.21727 0.98939 1.04319 0.90748 1.21065 0.88513 0.73639 0.83986 1.90626 1.17268 1.50719 1.86399 1.48485 1.08633 1.75342 1.04084 1.22272 0.79897 1.04426 0.95740 1.23145 0.94460 1.05107 0.93086 1.22896 0.97361 1.01611 0.74769 0.84460 1.47439 1.35485 1.12192 1.12098 1.24287 1.06308 0.91108 0.96858 1.24251 1.01855 0.98325 0.97308 1.75070 1.19521 1.05017 1.17805 1.78322 1.15870 1.22334 0.93809 1.22294 0.95646 1.00787 0.83441 1.20289 0.94324 0.94032 0.96617 1.21330 0.93223 0.95589 0.99559 1.21381 1.00304 1.00536 0.94127 1.21206 0.95716 1.00880 0.98866 1.21142 0.94943 1.02069 0.97729 1.21070 0.99280 1.02156 0.94606 0.92651 0.90311 0.85358 0.88815 0.89767 0.85278 0.87352 0.75628 0.76327 0.91713 0.91838 0.84737 0.85342 0.84697 0.85249 0.88207 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -42.28 7.97 21.45 0.17 -42.10 16 2 C 0.04 2.07 5.12 84.65 0.43 2.50 16 3 Si 0.92 43.28 29.54 68.60 2.03 45.31 16 4 H -0.29 -14.53 7.11 99.48 0.71 -13.83 16 5 H -0.28 -12.55 7.11 99.48 0.71 -11.85 16 6 H -0.28 -12.77 7.11 99.48 0.71 -12.06 16 7 C -0.49 -26.90 7.27 25.60 0.19 -26.71 16 8 H 0.02 1.38 7.82 -2.91 -0.02 1.36 16 9 C 0.09 4.19 1.97 -12.28 -0.02 4.16 16 10 H 0.01 0.59 7.91 -2.39 -0.02 0.57 16 11 C -0.12 -4.74 3.27 29.85 0.10 -4.64 16 12 C 0.54 21.97 7.60 87.66 0.67 22.64 16 13 O -0.57 -29.16 15.24 -3.04 -0.05 -29.20 16 14 N -0.63 -18.46 3.32 -811.38 -2.70 -21.15 16 15 C 0.10 1.78 6.48 86.73 0.56 2.34 16 16 C -0.12 -1.29 6.37 31.78 0.20 -1.09 16 17 C 0.14 2.39 4.10 46.46 0.19 2.58 16 18 H 0.14 2.27 8.14 -2.39 -0.02 2.25 16 19 N -0.28 -5.66 3.37 -320.22 -1.08 -6.74 16 20 C -0.03 -0.53 10.66 83.49 0.89 0.36 16 21 C -0.06 -1.08 12.05 83.73 1.01 -0.08 16 22 N -0.31 -8.29 12.41 -58.25 -0.72 -9.02 16 23 N -0.12 -3.41 13.17 37.02 0.49 -2.92 16 24 C 0.10 2.71 6.60 86.93 0.57 3.28 16 25 C -0.05 -2.31 4.69 -19.86 -0.09 -2.40 16 26 C -0.08 -3.18 7.46 22.27 0.17 -3.01 16 27 C -0.15 -5.08 10.05 22.27 0.22 -4.86 16 28 C -0.15 -4.86 10.05 22.27 0.22 -4.64 16 29 C -0.14 -4.95 10.05 22.27 0.22 -4.72 16 30 C -0.15 -6.36 9.71 22.27 0.22 -6.14 16 31 H 0.26 12.13 8.31 -92.71 -0.77 11.36 16 32 H 0.08 2.72 8.14 -2.39 -0.02 2.70 16 33 H 0.13 5.35 4.70 -2.39 -0.01 5.34 16 34 H 0.09 1.40 8.14 -2.38 -0.02 1.39 16 35 H 0.08 1.55 8.14 -2.39 -0.02 1.53 16 36 H 0.13 0.71 8.14 -2.39 -0.02 0.69 16 37 H 0.11 0.82 6.39 -2.39 -0.02 0.80 16 38 H 0.23 1.57 7.02 -2.91 -0.02 1.55 16 39 H 0.22 2.25 8.06 -2.91 -0.02 2.22 16 40 H 0.06 1.76 8.14 -2.39 -0.02 1.74 16 41 H 0.06 1.98 8.03 -2.39 -0.02 1.96 16 42 H 0.14 5.48 5.17 -2.91 -0.02 5.47 16 43 H 0.13 3.74 8.06 -2.91 -0.02 3.72 16 44 H 0.14 3.45 8.06 -2.91 -0.02 3.43 16 45 H 0.13 3.74 8.06 -2.91 -0.02 3.72 16 46 H 0.10 4.11 8.06 -2.91 -0.02 4.09 16 Total: -1.00 -73.00 374.33 4.88 -68.12 By element: Atomic # 1 Polarization: 17.15 SS G_CDS: 0.99 Total: 18.14 kcal Atomic # 6 Polarization: -26.18 SS G_CDS: 5.75 Total: -20.43 kcal Atomic # 7 Polarization: -78.09 SS G_CDS: -3.84 Total: -81.93 kcal Atomic # 8 Polarization: -29.16 SS G_CDS: -0.05 Total: -29.20 kcal Atomic # 14 Polarization: 43.28 SS G_CDS: 2.03 Total: 45.31 kcal Total: -73.00 4.88 -68.12 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000603112062.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 156.188 kcal (2) G-P(sol) polarization free energy of solvation -72.998 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 83.190 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.881 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.117 kcal (6) G-S(sol) free energy of system = (1) + (5) 88.071 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds