Wall clock time and date at job start Sat Apr 11 2020 06:03:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86797 * 120.00183 * 2 1 4 4 H 1.48495 * 109.47148 * 270.00068 * 3 2 1 5 5 H 1.48502 * 109.47319 * 30.00069 * 3 2 1 6 6 H 1.48503 * 109.47372 * 150.00287 * 3 2 1 7 7 C 1.37876 * 119.99893 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00356 * 359.97438 * 7 2 1 9 9 C 1.50700 * 120.00278 * 180.02562 * 7 2 1 10 10 N 1.46896 * 109.47554 * 180.02562 * 9 7 2 11 11 C 1.46899 * 111.00444 * 169.99919 * 10 9 7 12 12 C 1.53240 * 109.34152 * 187.25224 * 11 10 9 13 13 N 1.47085 * 108.51996 * 306.16858 * 12 11 10 14 14 C 1.34773 * 120.87868 * 231.19162 * 13 12 11 15 15 O 1.21572 * 120.00166 * 6.36986 * 14 13 12 16 16 N 1.34773 * 119.99837 * 186.37518 * 14 13 12 17 17 C 1.39126 * 120.00220 * 173.12704 * 16 14 13 18 18 C 1.40156 * 119.21377 * 22.35256 * 17 16 14 19 19 C 1.36273 * 119.87894 * 179.73433 * 18 17 16 20 20 C 1.40969 * 118.27203 * 0.54135 * 19 18 17 21 21 C 1.40358 * 121.27254 * 179.70487 * 20 19 18 22 22 C 1.36194 * 119.63836 * 179.97438 * 21 20 19 23 23 C 1.39301 * 120.85574 * 0.04760 * 22 21 20 24 24 C 1.36127 * 121.03561 * 359.94848 * 23 22 21 25 25 C 1.40556 * 119.75511 * 0.02562 * 24 23 22 26 26 N 1.31645 * 119.22189 * 202.61626 * 17 16 14 27 27 C 1.47080 * 118.23522 * 51.45642 * 13 12 11 28 28 C 1.46903 * 110.99745 * 294.29743 * 10 9 7 29 29 H 0.96998 * 120.00407 * 359.97438 * 1 2 3 30 30 H 1.08995 * 109.47405 * 59.99638 * 9 7 2 31 31 H 1.09003 * 109.46587 * 300.00365 * 9 7 2 32 32 H 1.09000 * 109.49148 * 67.29064 * 11 10 9 33 33 H 1.08997 * 109.48848 * 307.21057 * 11 10 9 34 34 H 1.09002 * 109.62794 * 186.46028 * 12 11 10 35 35 H 1.08993 * 109.62839 * 65.87860 * 12 11 10 36 36 H 0.96999 * 120.00027 * 352.85462 * 16 14 13 37 37 H 1.07999 * 120.06514 * 359.97438 * 18 17 16 38 38 H 1.08000 * 120.86096 * 180.26343 * 19 18 17 39 39 H 1.07998 * 120.17891 * 0.03121 * 21 20 19 40 40 H 1.08001 * 119.57318 * 180.02562 * 22 21 20 41 41 H 1.08001 * 119.48774 * 179.97438 * 23 22 21 42 42 H 1.07993 * 120.12399 * 180.02562 * 24 23 22 43 43 H 1.08997 * 109.62416 * 68.25649 * 27 13 12 44 44 H 1.09004 * 109.62653 * 188.83314 * 27 13 12 45 45 H 1.08993 * 109.49772 * 292.70736 * 28 10 9 46 46 H 1.09002 * 109.49289 * 52.76145 * 28 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0464 -1.4000 5 1 1.4466 2.6527 0.7001 6 1 3.5467 1.4401 0.7000 7 6 2.0044 -1.1941 0.0005 8 1 1.4645 -2.1294 0.0014 9 6 3.5114 -1.1942 0.0011 10 7 4.0011 -2.5791 0.0010 11 6 5.4500 -2.6253 -0.2366 12 6 5.8898 -4.0830 -0.4095 13 7 5.4257 -4.8523 0.7551 14 6 6.2756 -5.6321 1.4522 15 8 7.4636 -5.6182 1.1947 16 7 5.8083 -6.4276 2.4347 17 6 6.6581 -7.3362 3.0575 18 6 8.0417 -7.1160 3.0190 19 6 8.8862 -7.9944 3.6291 20 6 8.3292 -9.1158 4.2768 21 6 9.1408 -10.0634 4.9198 22 6 8.5673 -11.1342 5.5358 23 6 7.1844 -11.3024 5.5355 24 6 6.3681 -10.4025 4.9217 25 6 6.9231 -9.2844 4.2758 26 7 6.1439 -8.3851 3.6644 27 6 4.0083 -4.7524 1.1351 28 6 3.6440 -3.2638 1.2507 29 1 -0.4851 0.8400 0.0004 30 1 3.8745 -0.6801 0.8910 31 1 3.8751 -0.6805 -0.8889 32 1 5.9722 -2.1862 0.6135 33 1 5.6884 -2.0639 -1.1399 34 1 6.9769 -4.1326 -0.4715 35 1 5.4493 -4.4930 -1.3183 36 1 4.8805 -6.3638 2.7104 37 1 8.4377 -6.2496 2.5100 38 1 9.9547 -7.8379 3.6129 39 1 10.2141 -9.9436 4.9268 40 1 9.1927 -11.8625 6.0305 41 1 6.7531 -12.1600 6.0305 42 1 5.2979 -10.5472 4.9309 43 1 3.3905 -5.2256 0.3719 44 1 3.8510 -5.2448 2.0947 45 1 4.1913 -2.8159 2.0801 46 1 2.5728 -3.1651 1.4263 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000603115962.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:03:29 Heat of formation + Delta-G solvation = 67.643970 kcal Electronic energy + Delta-G solvation = -28402.091362 eV Core-core repulsion = 24485.830942 eV Total energy + Delta-G solvation = -3916.260420 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.46823 -40.38898 -38.29261 -37.16082 -34.96423 -34.45565 -33.61676 -32.45677 -30.97735 -30.27780 -29.84220 -28.66893 -25.94213 -24.19739 -24.01237 -23.41386 -22.31449 -21.97346 -20.90884 -19.80414 -18.76559 -18.46632 -17.28246 -16.99594 -16.90063 -16.05911 -15.84810 -14.99513 -14.88139 -14.74850 -14.67002 -14.61501 -14.45006 -14.18713 -14.03101 -13.72905 -13.55429 -13.31328 -13.15486 -12.48651 -12.36214 -12.22325 -11.91528 -11.85241 -11.64521 -11.27461 -11.19658 -10.90997 -10.78501 -10.64880 -10.46903 -10.39666 -10.07097 -9.97032 -9.64745 -9.40935 -8.82943 -8.65501 -8.60520 -8.21625 -7.55672 -6.13904 -4.12354 0.19668 0.64202 1.78809 2.15264 2.55038 3.02897 3.22531 3.30575 3.31762 3.45441 3.93248 4.22065 4.34218 4.38946 4.50651 4.56145 4.68502 4.70969 4.92185 5.00185 5.06588 5.15976 5.21128 5.23191 5.31201 5.46095 5.53384 5.56702 5.59285 5.64444 5.76578 5.81320 5.94063 6.00637 6.07457 6.14473 6.20855 6.24417 6.26501 6.36889 6.44921 6.64723 6.70504 6.72805 6.84628 7.42919 7.46133 7.72003 7.84002 7.86694 8.21968 8.53514 8.92686 9.47316 10.98795 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.026736 B = 0.002028 C = 0.001945 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1047.042702 B =13804.765393 C =14392.353348 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.070 3.930 3 Si 0.875 3.125 4 H -0.275 1.275 5 H -0.286 1.286 6 H -0.269 1.269 7 C -0.513 4.513 8 H 0.082 0.918 9 C 0.162 3.838 10 N -0.526 5.526 11 C 0.037 3.963 12 C 0.135 3.865 13 N -0.614 5.614 14 C 0.715 3.285 15 O -0.574 6.574 16 N -0.667 5.667 17 C 0.413 3.587 18 C -0.181 4.181 19 C -0.048 4.048 20 C -0.126 4.126 21 C -0.086 4.086 22 C -0.132 4.132 23 C -0.098 4.098 24 C -0.101 4.101 25 C 0.159 3.841 26 N -0.521 5.521 27 C 0.110 3.890 28 C 0.050 3.950 29 H 0.264 0.736 30 H -0.011 1.011 31 H 0.027 0.973 32 H 0.029 0.971 33 H 0.084 0.916 34 H 0.093 0.907 35 H 0.077 0.923 36 H 0.415 0.585 37 H 0.182 0.818 38 H 0.142 0.858 39 H 0.128 0.872 40 H 0.124 0.876 41 H 0.127 0.873 42 H 0.134 0.866 43 H 0.085 0.915 44 H 0.073 0.927 45 H 0.027 0.973 46 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.180 -19.414 9.287 27.537 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.132 4.132 3 Si 0.702 3.298 4 H -0.201 1.201 5 H -0.212 1.212 6 H -0.193 1.193 7 C -0.552 4.552 8 H 0.100 0.900 9 C 0.036 3.964 10 N -0.251 5.251 11 C -0.093 4.093 12 C 0.012 3.988 13 N -0.350 5.350 14 C 0.417 3.583 15 O -0.452 6.452 16 N -0.317 5.317 17 C 0.167 3.833 18 C -0.202 4.202 19 C -0.074 4.074 20 C -0.129 4.129 21 C -0.105 4.105 22 C -0.150 4.150 23 C -0.118 4.118 24 C -0.120 4.120 25 C 0.037 3.963 26 N -0.237 5.237 27 C -0.013 4.013 28 C -0.079 4.079 29 H 0.074 0.926 30 H 0.007 0.993 31 H 0.045 0.955 32 H 0.048 0.952 33 H 0.103 0.897 34 H 0.112 0.888 35 H 0.096 0.904 36 H 0.254 0.746 37 H 0.198 0.802 38 H 0.159 0.841 39 H 0.146 0.854 40 H 0.142 0.858 41 H 0.145 0.855 42 H 0.152 0.848 43 H 0.103 0.897 44 H 0.091 0.909 45 H 0.046 0.954 46 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges 16.674 -19.636 8.675 27.182 hybrid contribution 0.933 1.558 0.784 1.978 sum 17.607 -18.078 9.459 26.950 Atomic orbital electron populations 1.69880 1.06117 1.26978 1.50635 1.24894 0.94742 0.98892 0.94715 0.86870 0.80255 0.84020 0.78648 1.20083 1.21168 1.19338 1.20991 0.88546 0.94750 1.50864 0.90038 1.20185 0.97206 0.83651 0.95316 1.61898 1.10144 1.19368 1.33644 1.22495 0.90345 0.95286 1.01162 1.21750 1.00427 0.90359 0.86249 1.47487 1.09600 1.46541 1.31348 1.15616 0.85052 0.78865 0.78759 1.90717 1.13669 1.70628 1.70213 1.42570 1.14770 1.37246 1.37113 1.18236 0.87808 0.86994 0.90224 1.22700 0.92133 1.03977 1.01437 1.21463 1.00477 0.92048 0.93378 1.18855 0.94222 0.97620 1.02167 1.20956 0.99413 0.93625 0.96515 1.20858 0.95089 0.98405 1.00667 1.20867 0.93577 0.98896 0.98461 1.20743 1.00595 0.92957 0.97733 1.18446 0.88734 0.93544 0.95599 1.67359 1.39551 1.02410 1.14376 1.22105 0.80377 0.98659 1.00155 1.22443 1.03238 0.91185 0.91026 0.92557 0.99280 0.95501 0.95246 0.89725 0.88837 0.90444 0.74591 0.80177 0.84072 0.85432 0.85762 0.85457 0.84843 0.89708 0.90889 0.95439 0.87631 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.50 13.96 55.43 0.77 -25.73 16 2 C 0.07 1.94 5.47 -17.82 -0.10 1.84 16 3 Si 0.87 20.76 27.47 -169.99 -4.67 16.09 16 4 H -0.28 -6.44 7.11 56.52 0.40 -6.03 16 5 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 6 H -0.27 -6.17 6.54 56.52 0.37 -5.80 16 7 C -0.51 -13.73 8.96 -34.44 -0.31 -14.04 16 8 H 0.08 2.35 7.37 -52.48 -0.39 1.96 16 9 C 0.16 3.69 3.79 -4.98 -0.02 3.67 16 10 N -0.53 -9.96 4.62 -235.47 -1.09 -11.04 16 11 C 0.04 0.57 5.62 -3.70 -0.02 0.55 16 12 C 0.13 1.84 6.61 -3.60 -0.02 1.82 16 13 N -0.61 -8.40 3.00 -177.91 -0.53 -8.93 16 14 C 0.72 10.10 8.20 -86.92 -0.71 9.38 16 15 O -0.57 -9.10 12.43 5.30 0.07 -9.04 16 16 N -0.67 -8.40 5.32 -15.75 -0.08 -8.48 16 17 C 0.41 5.53 7.48 -155.15 -1.16 4.37 16 18 C -0.18 -2.28 8.80 -39.57 -0.35 -2.63 16 19 C -0.05 -0.50 9.88 -39.26 -0.39 -0.89 16 20 C -0.13 -1.36 5.74 -106.78 -0.61 -1.97 16 21 C -0.09 -0.71 9.77 -39.52 -0.39 -1.10 16 22 C -0.13 -0.95 9.96 -39.92 -0.40 -1.35 16 23 C -0.10 -0.75 9.94 -39.95 -0.40 -1.15 16 24 C -0.10 -1.00 9.98 -39.47 -0.39 -1.39 16 25 C 0.16 1.94 6.60 -84.86 -0.56 1.38 16 26 N -0.52 -7.01 10.37 -10.14 -0.11 -7.11 16 27 C 0.11 1.43 6.57 -3.37 -0.02 1.41 16 28 C 0.05 0.84 5.47 -3.46 -0.02 0.82 16 29 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 30 H -0.01 -0.25 7.18 -51.93 -0.37 -0.62 16 31 H 0.03 0.61 7.40 -51.93 -0.38 0.23 16 32 H 0.03 0.48 8.14 -51.93 -0.42 0.05 16 33 H 0.08 1.25 7.99 -51.93 -0.41 0.83 16 34 H 0.09 1.23 7.04 -51.93 -0.37 0.87 16 35 H 0.08 1.02 8.14 -51.93 -0.42 0.60 16 36 H 0.41 4.50 6.37 -40.82 -0.26 4.24 16 37 H 0.18 2.45 5.12 -53.15 -0.27 2.17 16 38 H 0.14 1.04 8.06 -52.49 -0.42 0.62 16 39 H 0.13 0.73 8.06 -52.49 -0.42 0.30 16 40 H 0.12 0.58 8.06 -52.49 -0.42 0.16 16 41 H 0.13 0.64 8.06 -52.49 -0.42 0.22 16 42 H 0.13 1.17 8.06 -52.49 -0.42 0.75 16 43 H 0.08 1.10 8.14 -51.93 -0.42 0.68 16 44 H 0.07 0.76 5.75 -51.93 -0.30 0.46 16 45 H 0.03 0.47 8.14 -51.93 -0.42 0.05 16 46 H 0.11 1.97 6.67 -51.93 -0.35 1.62 16 LS Contribution 368.81 15.07 5.56 5.56 Total: -1.00 -31.97 368.81 -12.02 -44.00 By element: Atomic # 1 Polarization: 10.05 SS G_CDS: -6.07 Total: 3.98 kcal Atomic # 6 Polarization: 6.59 SS G_CDS: -5.87 Total: 0.72 kcal Atomic # 7 Polarization: -60.26 SS G_CDS: -1.04 Total: -61.30 kcal Atomic # 8 Polarization: -9.10 SS G_CDS: 0.07 Total: -9.04 kcal Atomic # 14 Polarization: 20.76 SS G_CDS: -4.67 Total: 16.09 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -31.97 -12.02 -44.00 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000603115962.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.640 kcal (2) G-P(sol) polarization free energy of solvation -31.972 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 79.668 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.024 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.996 kcal (6) G-S(sol) free energy of system = (1) + (5) 67.644 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds