Wall clock time and date at job start Sat Apr 11 2020 06:03:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13603 * 1 3 3 C 1.47199 * 179.97438 * 2 1 4 4 C 1.53007 * 109.46803 * 227.11087 * 3 2 1 5 5 N 1.46504 * 109.46749 * 180.02562 * 4 3 2 6 6 C 1.46505 * 120.00149 * 270.00002 * 5 4 3 7 7 C 1.50702 * 109.46836 * 270.00364 * 6 5 4 8 8 H 1.07994 * 120.00445 * 0.02562 * 7 6 5 9 9 C 1.37877 * 119.99368 * 179.97438 * 7 6 5 10 10 N 1.31514 * 119.99702 * 179.97438 * 9 7 6 11 11 Si 1.86804 * 120.00160 * 0.02562 * 9 7 6 12 12 H 1.48500 * 109.46983 * 89.99885 * 11 9 7 13 13 H 1.48502 * 109.46686 * 209.99557 * 11 9 7 14 14 H 1.48496 * 109.47191 * 329.99556 * 11 9 7 15 15 C 1.34777 * 119.99736 * 90.00407 * 5 4 3 16 16 O 1.21282 * 119.99620 * 179.97438 * 15 5 4 17 17 C 1.50697 * 120.00369 * 359.97438 * 15 5 4 18 18 C 1.52997 * 109.47466 * 180.02562 * 17 15 5 19 19 C 1.53000 * 109.47060 * 180.02562 * 18 17 15 20 20 N 1.46499 * 109.46840 * 180.02562 * 19 18 17 21 21 C 1.36037 * 126.34815 * 264.68633 * 20 19 18 22 22 N 1.30107 * 110.10182 * 179.87780 * 21 20 19 23 23 C 1.35783 * 109.64164 * 0.39107 * 22 21 20 24 24 C 1.39747 * 133.60288 * 179.76274 * 23 22 21 25 25 C 1.36600 * 119.88568 * 180.02562 * 24 23 22 26 26 C 1.38771 * 120.67065 * 359.97394 * 25 24 23 27 27 C 1.37856 * 120.45260 * 0.04742 * 26 25 24 28 28 C 1.38055 * 126.35328 * 84.99901 * 20 19 18 29 29 H 1.09003 * 109.47078 * 107.11617 * 3 2 1 30 30 H 1.09001 * 109.47752 * 347.11150 * 3 2 1 31 31 H 1.09003 * 109.46871 * 60.00403 * 4 3 2 32 32 H 1.08994 * 109.47270 * 299.99881 * 4 3 2 33 33 H 1.08998 * 109.46420 * 30.00391 * 6 5 4 34 34 H 1.08995 * 109.46904 * 150.00397 * 6 5 4 35 35 H 0.97004 * 119.99964 * 179.97438 * 10 9 7 36 36 H 1.09002 * 109.47120 * 59.99760 * 17 15 5 37 37 H 1.08998 * 109.46862 * 300.00562 * 17 15 5 38 38 H 1.09002 * 109.47153 * 59.99773 * 18 17 15 39 39 H 1.09001 * 109.46832 * 299.99964 * 18 17 15 40 40 H 1.09001 * 109.47194 * 299.99650 * 19 18 17 41 41 H 1.08992 * 109.47399 * 59.99823 * 19 18 17 42 42 H 1.08003 * 124.94734 * 0.02562 * 21 20 19 43 43 H 1.08001 * 120.05734 * 359.97438 * 24 23 22 44 44 H 1.08001 * 119.66102 * 179.97438 * 25 24 23 45 45 H 1.08004 * 119.77568 * 180.02562 * 26 25 24 46 46 H 1.07994 * 120.15578 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 6 3.1175 0.9827 1.0569 5 7 4.5826 0.9838 1.0565 6 6 5.3161 0.0546 1.9196 7 6 5.5670 0.7029 3.2568 8 1 5.2150 1.7064 3.4450 9 6 6.2452 0.0144 4.2401 10 7 6.4647 0.5802 5.4069 11 14 6.8534 -1.7217 3.9148 12 1 8.2268 -1.6677 3.3525 13 1 6.8693 -2.4871 5.1872 14 1 5.9478 -2.3901 2.9462 15 6 5.2555 1.8397 0.2621 16 8 6.4683 1.8409 0.2621 17 6 4.5011 2.7951 -0.6261 18 6 5.4944 3.6477 -1.4181 19 6 4.7283 4.6182 -2.3193 20 7 5.6795 5.4341 -3.0781 21 6 6.1263 6.6741 -2.7413 22 7 6.9647 7.1060 -3.6375 23 6 7.1066 6.1752 -4.6159 24 6 7.8588 6.1206 -5.7924 25 6 7.7886 5.0171 -6.5945 26 6 6.9763 3.9449 -6.2538 27 6 6.2251 3.9769 -5.0984 28 6 6.2840 5.0898 -4.2705 29 1 2.9712 0.3033 -0.9822 30 1 2.9719 -1.0009 0.2292 31 1 2.7543 0.6801 2.0391 32 1 2.7538 1.9842 0.8277 33 1 4.7277 -0.8521 2.0601 34 1 6.2685 -0.1987 1.4542 35 1 6.9415 0.0957 6.0989 36 1 3.8737 3.4425 -0.0133 37 1 3.8749 2.2310 -1.3174 38 1 6.1214 3.0000 -2.0309 39 1 6.1208 4.2118 -0.7270 40 1 4.1016 4.0545 -3.0104 41 1 4.1017 5.2657 -1.7063 42 1 5.8301 7.2195 -1.8574 43 1 8.4940 6.9497 -6.0673 44 1 8.3712 4.9789 -7.5031 45 1 6.9320 3.0794 -6.8985 46 1 5.5948 3.1395 -4.8376 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000604471338.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:03:46 Heat of formation + Delta-G solvation = 62.539169 kcal Electronic energy + Delta-G solvation = -28067.279722 eV Core-core repulsion = 24150.797942 eV Total energy + Delta-G solvation = -3916.481780 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -42.29084 -39.59715 -37.56930 -37.04017 -35.76809 -35.30022 -33.05435 -32.49388 -31.11392 -30.45720 -29.47852 -28.52923 -26.74916 -24.19219 -23.45777 -23.33029 -22.22850 -21.61736 -20.64200 -18.67104 -17.87376 -17.43952 -17.32002 -16.90783 -16.60978 -16.00131 -15.73743 -15.68257 -15.48272 -14.80653 -14.53099 -14.32896 -14.08422 -13.92220 -13.76874 -13.66410 -13.24652 -12.91430 -12.73665 -12.59501 -12.45565 -12.30264 -12.16360 -12.05849 -11.81892 -11.73284 -11.66342 -11.50437 -11.20719 -11.09919 -10.86916 -10.63174 -10.51643 -10.28252 -10.09459 -9.66883 -9.25641 -8.68471 -8.53031 -8.27474 -8.01507 -6.18057 -4.18167 0.79676 1.35697 2.39072 2.58570 2.65641 2.67215 3.09860 3.21435 3.26605 3.29684 3.44726 3.72886 3.99531 4.11734 4.30442 4.33547 4.36007 4.56809 4.75305 4.81083 4.82816 4.85470 4.92097 5.03151 5.05732 5.12843 5.20829 5.24192 5.26064 5.28640 5.37793 5.41493 5.54885 5.65850 5.79860 5.92734 5.98360 6.08175 6.25389 6.33668 6.36555 6.50890 6.69303 6.78833 6.95334 7.09313 7.43454 7.48915 7.71256 7.97565 8.34604 8.72114 8.85122 9.41270 10.95147 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.010565 B = 0.002571 C = 0.002298 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2649.744486 B =10888.566414 C =12180.038634 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.441 5.441 2 C 0.215 3.785 3 C -0.051 4.051 4 C 0.117 3.883 5 N -0.593 5.593 6 C 0.214 3.786 7 C -0.533 4.533 8 H 0.075 0.925 9 C 0.073 3.927 10 N -0.895 5.895 11 Si 0.875 3.125 12 H -0.273 1.273 13 H -0.285 1.285 14 H -0.265 1.265 15 C 0.509 3.491 16 O -0.530 6.530 17 C -0.140 4.140 18 C -0.121 4.121 19 C 0.110 3.890 20 N -0.488 5.488 21 C 0.264 3.736 22 N -0.501 5.501 23 C 0.043 3.957 24 C -0.066 4.066 25 C -0.131 4.131 26 C -0.105 4.105 27 C -0.107 4.107 28 C 0.049 3.951 29 H 0.107 0.893 30 H 0.115 0.885 31 H 0.096 0.904 32 H 0.080 0.920 33 H 0.032 0.968 34 H 0.039 0.961 35 H 0.266 0.734 36 H 0.095 0.905 37 H 0.090 0.910 38 H 0.078 0.922 39 H 0.081 0.919 40 H 0.089 0.911 41 H 0.098 0.902 42 H 0.213 0.787 43 H 0.126 0.874 44 H 0.127 0.873 45 H 0.128 0.872 46 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.047 6.136 -20.944 22.401 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.118 5.118 2 C -0.103 4.103 3 C -0.092 4.092 4 C -0.009 4.009 5 N -0.324 5.324 6 C 0.094 3.906 7 C -0.571 4.571 8 H 0.093 0.907 9 C -0.129 4.129 10 N -0.533 5.533 11 Si 0.702 3.298 12 H -0.199 1.199 13 H -0.211 1.211 14 H -0.190 1.190 15 C 0.296 3.704 16 O -0.406 6.406 17 C -0.181 4.181 18 C -0.160 4.160 19 C -0.012 4.012 20 N -0.178 5.178 21 C -0.022 4.022 22 N -0.219 5.219 23 C -0.075 4.075 24 C -0.085 4.085 25 C -0.151 4.151 26 C -0.125 4.125 27 C -0.128 4.128 28 C -0.060 4.060 29 H 0.125 0.875 30 H 0.133 0.867 31 H 0.115 0.885 32 H 0.098 0.902 33 H 0.050 0.950 34 H 0.057 0.943 35 H 0.076 0.924 36 H 0.113 0.887 37 H 0.108 0.892 38 H 0.096 0.904 39 H 0.100 0.900 40 H 0.107 0.893 41 H 0.116 0.884 42 H 0.230 0.770 43 H 0.144 0.856 44 H 0.145 0.855 45 H 0.146 0.854 46 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -5.659 6.798 -20.658 22.472 hybrid contribution 0.270 -1.718 0.317 1.768 sum -5.389 5.081 -20.342 21.648 Atomic orbital electron populations 1.81233 1.13006 1.08836 1.08766 1.29054 0.95052 0.93130 0.93111 1.19894 0.81494 1.04749 1.03071 1.21337 0.81737 0.98479 0.99360 1.47899 1.04956 1.37989 1.41547 1.19730 0.92499 0.88290 0.90084 1.21281 1.37370 1.03044 0.95422 0.90703 1.24863 0.95171 0.98034 0.94882 1.69888 1.41150 1.37745 1.04513 0.86870 0.80176 0.84777 0.77957 1.19883 1.21066 1.18994 1.20282 0.88110 0.81383 0.80668 1.90719 1.13895 1.68959 1.67063 1.21658 0.99132 0.98398 0.98909 1.21717 0.98155 0.97653 0.98492 1.21941 0.90313 0.94053 0.94913 1.45488 1.37654 1.16099 1.18531 1.25392 0.93509 0.83678 0.99589 1.70462 1.18607 1.29460 1.03414 1.19096 1.00254 0.91472 0.96722 1.20016 0.98123 0.98662 0.91744 1.20629 1.00562 0.93679 1.00262 1.20884 0.96635 0.98800 0.96170 1.19984 1.02241 0.95936 0.94637 1.18909 0.99457 0.98357 0.89283 0.87524 0.86684 0.88518 0.90218 0.95003 0.94296 0.92449 0.88687 0.89175 0.90371 0.90035 0.89253 0.88367 0.77026 0.85557 0.85517 0.85388 0.86032 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.44 -5.83 18.54 42.15 0.78 -5.04 16 2 C 0.21 2.21 15.43 -20.76 -0.32 1.89 16 3 C -0.05 -0.42 6.03 -29.52 -0.18 -0.60 16 4 C 0.12 1.32 5.17 -4.04 -0.02 1.30 16 5 N -0.59 -9.60 2.46 -175.05 -0.43 -10.03 16 6 C 0.21 4.52 4.23 -5.19 -0.02 4.50 16 7 C -0.53 -14.02 9.94 -34.44 -0.34 -14.37 16 8 H 0.07 2.17 8.06 -52.49 -0.42 1.75 16 9 C 0.07 2.02 5.47 -17.82 -0.10 1.92 16 10 N -0.89 -26.44 13.96 55.43 0.77 -25.67 16 11 Si 0.88 20.26 27.47 -169.99 -4.67 15.59 16 12 H -0.27 -6.43 7.11 56.52 0.40 -6.02 16 13 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 14 H -0.27 -5.62 6.54 56.52 0.37 -5.25 16 15 C 0.51 8.17 7.67 -10.99 -0.08 8.09 16 16 O -0.53 -11.28 15.56 5.56 0.09 -11.20 16 17 C -0.14 -1.35 4.25 -27.89 -0.12 -1.47 16 18 C -0.12 -1.22 4.83 -26.73 -0.13 -1.35 16 19 C 0.11 0.78 6.16 -4.04 -0.02 0.76 16 20 N -0.49 -4.89 2.81 -115.80 -0.32 -5.22 16 21 C 0.26 2.72 12.49 -89.79 -1.12 1.60 16 22 N -0.50 -6.64 11.27 -12.05 -0.14 -6.77 16 23 C 0.04 0.55 7.23 -84.70 -0.61 -0.06 16 24 C -0.07 -0.72 10.05 -39.61 -0.40 -1.12 16 25 C -0.13 -1.17 9.96 -39.98 -0.40 -1.57 16 26 C -0.11 -0.92 10.03 -39.52 -0.40 -1.32 16 27 C -0.11 -1.06 10.05 -39.50 -0.40 -1.46 16 28 C 0.05 0.57 6.87 -83.99 -0.58 -0.01 16 29 H 0.11 0.63 7.22 -51.93 -0.37 0.25 16 30 H 0.12 0.93 8.14 -51.93 -0.42 0.51 16 31 H 0.10 1.22 8.07 -51.93 -0.42 0.80 16 32 H 0.08 0.70 6.44 -51.93 -0.33 0.37 16 33 H 0.03 0.62 7.13 -51.93 -0.37 0.25 16 34 H 0.04 0.90 6.85 -51.93 -0.36 0.54 16 35 H 0.27 7.36 8.31 -40.82 -0.34 7.02 16 36 H 0.09 0.75 7.40 -51.93 -0.38 0.36 16 37 H 0.09 0.57 7.18 -51.93 -0.37 0.20 16 38 H 0.08 0.93 8.10 -51.93 -0.42 0.51 16 39 H 0.08 1.01 8.10 -51.93 -0.42 0.59 16 40 H 0.09 0.50 8.14 -51.93 -0.42 0.08 16 41 H 0.10 0.47 8.13 -51.93 -0.42 0.05 16 42 H 0.21 1.32 8.06 -52.48 -0.42 0.90 16 43 H 0.13 1.19 8.06 -52.49 -0.42 0.76 16 44 H 0.13 0.79 8.06 -52.49 -0.42 0.37 16 45 H 0.13 0.79 8.06 -52.48 -0.42 0.37 16 46 H 0.12 0.97 8.06 -52.49 -0.42 0.54 16 LS Contribution 396.25 15.07 5.97 5.97 Total: -1.00 -37.20 396.25 -9.61 -46.81 By element: Atomic # 1 Polarization: 5.22 SS G_CDS: -6.42 Total: -1.21 kcal Atomic # 6 Polarization: 2.00 SS G_CDS: -5.24 Total: -3.24 kcal Atomic # 7 Polarization: -53.40 SS G_CDS: 0.66 Total: -52.74 kcal Atomic # 8 Polarization: -11.28 SS G_CDS: 0.09 Total: -11.20 kcal Atomic # 14 Polarization: 20.26 SS G_CDS: -4.67 Total: 15.59 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -37.20 -9.61 -46.81 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000604471338.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.353 kcal (2) G-P(sol) polarization free energy of solvation -37.203 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 72.150 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.611 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.814 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.539 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds