Wall clock time and date at job start Sat Apr 11 2020 06:03:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13603 * 1 3 3 C 1.47199 * 179.97438 * 2 1 4 4 C 1.53007 * 109.46803 * 227.11087 * 3 2 1 5 5 N 1.46504 * 109.46749 * 180.02562 * 4 3 2 6 6 C 1.46505 * 120.00149 * 270.00002 * 5 4 3 7 7 C 1.50702 * 109.46836 * 270.00364 * 6 5 4 8 8 H 1.07994 * 120.00445 * 0.02562 * 7 6 5 9 9 C 1.37877 * 119.99368 * 179.97438 * 7 6 5 10 10 N 1.31514 * 119.99702 * 179.97438 * 9 7 6 11 11 Si 1.86804 * 120.00160 * 0.02562 * 9 7 6 12 12 H 1.48500 * 109.46983 * 89.99885 * 11 9 7 13 13 H 1.48502 * 109.46686 * 209.99557 * 11 9 7 14 14 H 1.48496 * 109.47191 * 329.99556 * 11 9 7 15 15 C 1.34777 * 119.99736 * 90.00407 * 5 4 3 16 16 O 1.21282 * 119.99620 * 179.97438 * 15 5 4 17 17 C 1.50697 * 120.00369 * 359.97438 * 15 5 4 18 18 C 1.52997 * 109.47466 * 180.02562 * 17 15 5 19 19 C 1.53000 * 109.47060 * 180.02562 * 18 17 15 20 20 N 1.46499 * 109.46840 * 180.02562 * 19 18 17 21 21 C 1.36037 * 126.34815 * 264.68633 * 20 19 18 22 22 N 1.30107 * 110.10182 * 179.87780 * 21 20 19 23 23 C 1.35783 * 109.64164 * 0.39107 * 22 21 20 24 24 C 1.39747 * 133.60288 * 179.76274 * 23 22 21 25 25 C 1.36600 * 119.88568 * 180.02562 * 24 23 22 26 26 C 1.38771 * 120.67065 * 359.97394 * 25 24 23 27 27 C 1.37856 * 120.45260 * 0.04742 * 26 25 24 28 28 C 1.38055 * 126.35328 * 84.99901 * 20 19 18 29 29 H 1.09003 * 109.47078 * 107.11617 * 3 2 1 30 30 H 1.09001 * 109.47752 * 347.11150 * 3 2 1 31 31 H 1.09003 * 109.46871 * 60.00403 * 4 3 2 32 32 H 1.08994 * 109.47270 * 299.99881 * 4 3 2 33 33 H 1.08998 * 109.46420 * 30.00391 * 6 5 4 34 34 H 1.08995 * 109.46904 * 150.00397 * 6 5 4 35 35 H 0.97004 * 119.99964 * 179.97438 * 10 9 7 36 36 H 1.09002 * 109.47120 * 59.99760 * 17 15 5 37 37 H 1.08998 * 109.46862 * 300.00562 * 17 15 5 38 38 H 1.09002 * 109.47153 * 59.99773 * 18 17 15 39 39 H 1.09001 * 109.46832 * 299.99964 * 18 17 15 40 40 H 1.09001 * 109.47194 * 299.99650 * 19 18 17 41 41 H 1.08992 * 109.47399 * 59.99823 * 19 18 17 42 42 H 1.08003 * 124.94734 * 0.02562 * 21 20 19 43 43 H 1.08001 * 120.05734 * 359.97438 * 24 23 22 44 44 H 1.08001 * 119.66102 * 179.97438 * 25 24 23 45 45 H 1.08004 * 119.77568 * 180.02562 * 26 25 24 46 46 H 1.07994 * 120.15578 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 6 3.1175 0.9827 1.0569 5 7 4.5826 0.9838 1.0565 6 6 5.3161 0.0546 1.9196 7 6 5.5670 0.7029 3.2568 8 1 5.2150 1.7064 3.4450 9 6 6.2452 0.0144 4.2401 10 7 6.4647 0.5802 5.4069 11 14 6.8534 -1.7217 3.9148 12 1 8.2268 -1.6677 3.3525 13 1 6.8693 -2.4871 5.1872 14 1 5.9478 -2.3901 2.9462 15 6 5.2555 1.8397 0.2621 16 8 6.4683 1.8409 0.2621 17 6 4.5011 2.7951 -0.6261 18 6 5.4944 3.6477 -1.4181 19 6 4.7283 4.6182 -2.3193 20 7 5.6795 5.4341 -3.0781 21 6 6.1263 6.6741 -2.7413 22 7 6.9647 7.1060 -3.6375 23 6 7.1066 6.1752 -4.6159 24 6 7.8588 6.1206 -5.7924 25 6 7.7886 5.0171 -6.5945 26 6 6.9763 3.9449 -6.2538 27 6 6.2251 3.9769 -5.0984 28 6 6.2840 5.0898 -4.2705 29 1 2.9712 0.3033 -0.9822 30 1 2.9719 -1.0009 0.2292 31 1 2.7543 0.6801 2.0391 32 1 2.7538 1.9842 0.8277 33 1 4.7277 -0.8521 2.0601 34 1 6.2685 -0.1987 1.4542 35 1 6.9415 0.0957 6.0989 36 1 3.8737 3.4425 -0.0133 37 1 3.8749 2.2310 -1.3174 38 1 6.1214 3.0000 -2.0309 39 1 6.1208 4.2118 -0.7270 40 1 4.1016 4.0545 -3.0104 41 1 4.1017 5.2657 -1.7063 42 1 5.8301 7.2195 -1.8574 43 1 8.4940 6.9497 -6.0673 44 1 8.3712 4.9789 -7.5031 45 1 6.9320 3.0794 -6.8985 46 1 5.5948 3.1395 -4.8376 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000604471338.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:03:45 Heat of formation + Delta-G solvation = 40.018236 kcal Electronic energy + Delta-G solvation = -28068.256303 eV Core-core repulsion = 24150.797942 eV Total energy + Delta-G solvation = -3917.458361 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -43.02647 -40.82916 -38.26764 -37.97672 -36.80023 -36.28477 -34.82221 -33.50258 -32.27588 -31.21314 -30.20852 -29.96679 -27.76420 -25.19131 -24.69100 -24.13470 -23.11772 -22.68125 -21.35208 -19.84259 -19.16656 -18.48346 -18.16806 -18.09764 -17.65500 -16.96868 -16.71138 -16.58811 -16.29010 -16.04246 -15.67932 -15.25456 -15.08634 -14.77643 -14.70012 -14.55152 -14.45475 -14.18846 -13.82660 -13.62327 -13.48118 -13.36340 -13.17592 -12.90811 -12.82714 -12.73404 -12.59650 -12.46010 -12.39002 -12.24972 -11.97742 -11.93200 -11.69277 -11.66404 -11.28649 -10.88837 -10.78256 -10.59846 -9.43134 -9.27571 -9.02470 -8.29011 -6.33241 0.06866 0.61868 1.37102 1.41421 1.48370 1.70139 1.74433 1.90106 1.90892 1.92186 2.34454 2.35750 2.96982 3.06464 3.18230 3.41530 3.68510 3.71783 3.78699 3.99500 4.07843 4.15438 4.18266 4.25170 4.28264 4.36609 4.52440 4.55440 4.56901 4.59944 4.71426 4.73590 4.85180 4.88224 4.92416 5.04237 5.07237 5.16128 5.29305 5.30574 5.52121 5.53149 5.63001 5.64485 5.66014 6.01852 6.27385 6.28609 6.66369 6.70254 6.74927 6.93993 7.28066 7.50225 8.87850 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.010565 B = 0.002571 C = 0.002298 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2649.744486 B =10888.566414 C =12180.038634 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.493 5.493 2 C 0.246 3.754 3 C -0.038 4.038 4 C 0.111 3.889 5 N -0.596 5.596 6 C 0.221 3.779 7 C -0.531 4.531 8 H 0.030 0.970 9 C 0.007 3.993 10 N -0.950 5.950 11 Si 0.943 3.057 12 H -0.281 1.281 13 H -0.284 1.284 14 H -0.226 1.226 15 C 0.499 3.501 16 O -0.594 6.594 17 C -0.126 4.126 18 C -0.113 4.113 19 C 0.113 3.887 20 N -0.489 5.489 21 C 0.261 3.739 22 N -0.544 5.544 23 C 0.006 3.994 24 C -0.091 4.091 25 C -0.127 4.127 26 C -0.107 4.107 27 C -0.116 4.116 28 C 0.030 3.970 29 H 0.144 0.856 30 H 0.123 0.877 31 H 0.079 0.921 32 H 0.111 0.889 33 H 0.059 0.941 34 H 0.021 0.979 35 H 0.265 0.735 36 H 0.123 0.877 37 H 0.139 0.861 38 H 0.054 0.946 39 H 0.047 0.953 40 H 0.116 0.884 41 H 0.129 0.871 42 H 0.245 0.755 43 H 0.128 0.872 44 H 0.154 0.846 45 H 0.158 0.842 46 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.173 4.407 -23.568 25.026 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.171 5.171 2 C -0.072 4.072 3 C -0.079 4.079 4 C -0.013 4.013 5 N -0.326 5.326 6 C 0.098 3.902 7 C -0.570 4.570 8 H 0.049 0.951 9 C -0.191 4.191 10 N -0.591 5.591 11 Si 0.766 3.234 12 H -0.207 1.207 13 H -0.210 1.210 14 H -0.148 1.148 15 C 0.289 3.711 16 O -0.475 6.475 17 C -0.166 4.166 18 C -0.152 4.152 19 C -0.007 4.007 20 N -0.177 5.177 21 C -0.025 4.025 22 N -0.264 5.264 23 C -0.112 4.112 24 C -0.111 4.111 25 C -0.147 4.147 26 C -0.126 4.126 27 C -0.137 4.137 28 C -0.079 4.079 29 H 0.162 0.838 30 H 0.141 0.859 31 H 0.097 0.903 32 H 0.130 0.870 33 H 0.076 0.924 34 H 0.039 0.961 35 H 0.074 0.926 36 H 0.141 0.859 37 H 0.157 0.843 38 H 0.073 0.927 39 H 0.066 0.934 40 H 0.134 0.866 41 H 0.148 0.852 42 H 0.261 0.739 43 H 0.146 0.854 44 H 0.171 0.829 45 H 0.176 0.824 46 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -7.862 5.063 -23.314 25.119 hybrid contribution 0.970 -1.087 1.153 1.858 sum -6.892 3.976 -22.161 23.546 Atomic orbital electron populations 1.81287 1.14679 1.10564 1.10603 1.29204 0.95003 0.91519 0.91434 1.19875 0.79834 1.04370 1.03774 1.21567 0.78576 1.01332 0.99856 1.47879 1.06898 1.37269 1.40560 1.19375 0.93073 0.89814 0.87923 1.21638 1.36076 1.01321 0.97942 0.95124 1.25864 0.95632 1.02998 0.94559 1.70062 1.43082 1.39978 1.05947 0.85792 0.79679 0.79379 0.78575 1.20671 1.20997 1.14836 1.21466 0.87760 0.81305 0.80581 1.90695 1.17032 1.70639 1.69135 1.21699 0.98689 0.97484 0.98726 1.21581 0.98067 0.97607 0.97985 1.22124 0.89531 0.93989 0.95076 1.45657 1.37815 1.16094 1.18182 1.26055 0.92558 0.84064 0.99782 1.70400 1.20447 1.30869 1.04687 1.19551 1.01661 0.92385 0.97614 1.20277 0.98825 0.99857 0.92109 1.20993 1.00240 0.92905 1.00592 1.21316 0.95654 0.99490 0.96134 1.20348 1.02691 0.95945 0.94671 1.19236 0.99781 0.98659 0.90225 0.83792 0.85865 0.90268 0.87045 0.92354 0.96063 0.92583 0.85924 0.84297 0.92700 0.93403 0.86571 0.85249 0.73878 0.85398 0.82884 0.82429 0.83932 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.49 -11.70 18.54 20.01 0.37 -11.32 16 2 C 0.25 4.09 15.43 89.44 1.38 5.47 16 3 C -0.04 -0.43 6.03 28.79 0.17 -0.26 16 4 C 0.11 2.10 5.17 86.38 0.45 2.54 16 5 N -0.60 -18.04 2.46 -826.13 -2.03 -20.07 16 6 C 0.22 9.07 4.23 85.63 0.36 9.43 16 7 C -0.53 -28.56 9.94 25.60 0.25 -28.31 16 8 H 0.03 1.86 8.06 -2.91 -0.02 1.83 16 9 C 0.01 0.39 5.47 84.65 0.46 0.85 16 10 N -0.95 -58.29 13.96 21.45 0.30 -57.99 16 11 Si 0.94 41.70 27.47 68.60 1.88 43.59 16 12 H -0.28 -12.70 7.11 99.48 0.71 -11.99 16 13 H -0.28 -12.44 7.11 99.48 0.71 -11.74 16 14 H -0.23 -8.47 6.54 99.48 0.65 -7.82 16 15 C 0.50 15.19 7.67 87.66 0.67 15.87 16 16 O -0.59 -25.67 15.56 -3.04 -0.05 -25.72 16 17 C -0.13 -1.92 4.25 29.85 0.13 -1.79 16 18 C -0.11 -2.04 4.83 30.59 0.15 -1.90 16 19 C 0.11 1.22 6.16 86.38 0.53 1.75 16 20 N -0.49 -9.06 2.81 -520.28 -1.46 -10.52 16 21 C 0.26 5.26 12.49 180.06 2.25 7.51 16 22 N -0.54 -14.88 11.27 -192.03 -2.16 -17.04 16 23 C 0.01 0.15 7.23 39.45 0.29 0.43 16 24 C -0.09 -2.02 10.05 22.25 0.22 -1.80 16 25 C -0.13 -2.11 9.96 22.01 0.22 -1.89 16 26 C -0.11 -1.63 10.03 22.31 0.22 -1.40 16 27 C -0.12 -2.06 10.05 22.32 0.22 -1.83 16 28 C 0.03 0.68 6.87 38.86 0.27 0.95 16 29 H 0.14 0.70 7.22 -2.39 -0.02 0.69 16 30 H 0.12 1.38 8.14 -2.39 -0.02 1.36 16 31 H 0.08 1.82 8.07 -2.39 -0.02 1.80 16 32 H 0.11 1.41 6.44 -2.39 -0.02 1.40 16 33 H 0.06 2.11 7.13 -2.39 -0.02 2.09 16 34 H 0.02 0.96 6.85 -2.39 -0.02 0.95 16 35 H 0.27 15.28 8.31 -92.71 -0.77 14.51 16 36 H 0.12 1.29 7.40 -2.39 -0.02 1.27 16 37 H 0.14 0.82 7.18 -2.39 -0.02 0.80 16 38 H 0.05 1.25 8.10 -2.39 -0.02 1.23 16 39 H 0.05 1.18 8.10 -2.39 -0.02 1.16 16 40 H 0.12 0.69 8.14 -2.39 -0.02 0.67 16 41 H 0.13 0.63 8.13 -2.39 -0.02 0.61 16 42 H 0.25 2.74 8.06 -2.91 -0.02 2.71 16 43 H 0.13 2.57 8.06 -2.91 -0.02 2.55 16 44 H 0.15 1.59 8.06 -2.91 -0.02 1.57 16 45 H 0.16 1.39 8.06 -2.91 -0.02 1.36 16 46 H 0.14 1.80 8.06 -2.91 -0.02 1.78 16 Total: -1.00 -90.72 396.25 6.04 -84.68 By element: Atomic # 1 Polarization: 7.85 SS G_CDS: 0.94 Total: 8.79 kcal Atomic # 6 Polarization: -2.64 SS G_CDS: 8.25 Total: 5.61 kcal Atomic # 7 Polarization: -111.96 SS G_CDS: -4.98 Total: -116.94 kcal Atomic # 8 Polarization: -25.67 SS G_CDS: -0.05 Total: -25.72 kcal Atomic # 14 Polarization: 41.70 SS G_CDS: 1.88 Total: 43.59 kcal Total: -90.72 6.04 -84.68 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000604471338.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 124.699 kcal (2) G-P(sol) polarization free energy of solvation -90.723 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.976 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.042 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.681 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.018 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds