Wall clock time and date at job start Sat Apr 11 2020 06:03:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86800 * 119.99713 * 2 1 4 4 H 1.48505 * 109.46898 * 272.93943 * 3 2 1 5 5 H 1.48502 * 109.47526 * 32.93725 * 3 2 1 6 6 H 1.48503 * 109.47449 * 152.94392 * 3 2 1 7 7 C 1.38804 * 120.00109 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00311 * 339.34703 * 7 2 1 9 9 N 1.36944 * 119.99949 * 159.34664 * 7 2 1 10 10 C 1.46922 * 120.62957 * 332.63179 * 9 7 2 11 11 C 1.53188 * 108.77809 * 233.58618 * 10 9 7 12 12 C 1.53039 * 109.31351 * 305.36530 * 11 10 9 13 13 N 1.46493 * 109.46490 * 181.38056 * 12 11 10 14 14 C 1.34780 * 120.00254 * 154.99962 * 13 12 11 15 15 O 1.21697 * 119.99605 * 0.02562 * 14 13 12 16 16 C 1.46654 * 119.99968 * 180.02562 * 14 13 12 17 17 C 1.37840 * 126.81785 * 180.02562 * 16 14 13 18 18 N 1.32965 * 107.98937 * 179.97438 * 17 16 14 19 19 C 1.31799 * 109.77678 * 0.02562 * 18 17 16 20 20 C 1.47824 * 125.50919 * 180.02562 * 19 18 17 21 21 C 1.39587 * 120.14410 * 179.70013 * 20 19 18 22 22 C 1.37953 * 119.84915 * 179.74073 * 21 20 19 23 23 C 1.38359 * 120.14911 * 0.50835 * 22 21 20 24 24 C 1.38364 * 120.29292 * 359.76255 * 23 22 21 25 25 C 1.37962 * 120.14111 * 359.97438 * 24 23 22 26 26 N 1.35909 * 108.98343 * 359.97438 * 19 18 17 27 27 H 0.96998 * 126.55132 * 180.26302 * 26 19 18 28 28 C 1.53043 * 109.53746 * 61.36345 * 12 11 10 29 29 C 1.46928 * 120.63128 * 152.60721 * 9 7 2 30 30 H 0.96999 * 119.99854 * 0.02562 * 1 2 3 31 31 H 1.09002 * 109.58853 * 113.79695 * 10 9 7 32 32 H 1.09000 * 109.70822 * 353.44655 * 10 9 7 33 33 H 1.08998 * 109.50242 * 185.41602 * 11 10 9 34 34 H 1.09003 * 109.49717 * 65.31686 * 11 10 9 35 35 H 1.08999 * 109.46266 * 301.36062 * 12 11 10 36 36 H 0.97004 * 120.00425 * 335.00874 * 13 12 11 37 37 H 1.07996 * 126.00614 * 359.94422 * 17 16 14 38 38 H 1.07999 * 120.07450 * 359.96943 * 21 20 19 39 39 H 1.08003 * 119.92862 * 180.24875 * 22 21 20 40 40 H 1.07998 * 119.85706 * 179.74143 * 23 22 21 41 41 H 1.07991 * 119.92828 * 180.02562 * 24 23 22 42 42 H 1.08005 * 120.06814 * 180.02562 * 25 24 23 43 43 H 1.09003 * 109.50092 * 58.58542 * 28 12 11 44 44 H 1.08998 * 109.50289 * 178.68674 * 28 12 11 45 45 H 1.08998 * 109.58996 * 246.20257 * 29 9 7 46 46 H 1.08996 * 109.58485 * 6.48726 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4354 2.0823 -1.3983 5 1 1.4800 2.6340 0.7612 6 1 3.5775 1.4232 0.6368 7 6 2.0102 -1.2021 0.0005 8 1 1.5224 -2.1072 0.3308 9 7 3.3137 -1.2403 -0.4178 10 6 3.8173 -0.2594 -1.3887 11 6 4.4623 -1.0096 -2.5582 12 6 5.5291 -1.9656 -2.0197 13 7 6.1709 -2.6608 -3.1381 14 6 7.4214 -3.1450 -3.0022 15 8 8.0171 -3.0051 -1.9503 16 6 8.0641 -3.8405 -4.1221 17 6 9.3289 -4.3883 -4.1377 18 7 9.5291 -4.9249 -5.3377 19 6 8.4606 -4.7486 -6.0890 20 6 8.3077 -5.2082 -7.4856 21 6 7.1198 -4.9656 -8.1773 22 6 6.9856 -5.3924 -9.4822 23 6 8.0213 -6.0689 -10.1021 24 6 9.1993 -6.3176 -9.4203 25 6 9.3485 -5.8914 -8.1167 26 7 7.5217 -4.0771 -5.3716 27 1 6.6384 -3.8170 -5.6767 28 6 4.8754 -2.9906 -1.0900 29 6 4.2351 -2.2628 0.0963 30 1 -0.4850 0.8400 -0.0004 31 1 4.5597 0.3799 -0.9107 32 1 2.9924 0.3508 -1.7564 33 1 4.9248 -0.2944 -3.2385 34 1 3.6997 -1.5780 -3.0906 35 1 6.2781 -1.3994 -1.4661 36 1 5.6961 -2.7726 -3.9765 37 1 10.0335 -4.3822 -3.3194 38 1 6.3090 -4.4416 -7.6932 39 1 6.0686 -5.2018 -10.0200 40 1 7.9096 -6.4046 -11.1225 41 1 10.0040 -6.8457 -9.9099 42 1 10.2687 -6.0858 -7.5857 43 1 4.1089 -3.5404 -1.6362 44 1 5.6318 -3.6854 -0.7252 45 1 5.0116 -1.7870 0.6953 46 1 3.6846 -2.9751 0.7107 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000609881710.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:03:53 Heat of formation + Delta-G solvation = 69.227755 kcal Electronic energy + Delta-G solvation = -28217.063990 eV Core-core repulsion = 24300.872248 eV Total energy + Delta-G solvation = -3916.191742 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -42.43243 -39.78492 -39.25625 -37.64834 -34.79909 -33.30251 -32.65397 -32.12260 -31.35997 -30.53932 -30.26642 -28.87116 -25.39973 -24.19166 -23.36545 -23.03617 -22.47260 -21.77922 -21.00964 -20.46763 -19.86749 -18.98451 -17.40169 -16.88591 -16.33016 -16.15059 -15.83963 -15.64277 -15.16002 -14.99951 -14.59268 -14.28742 -14.21078 -14.04467 -13.93449 -13.86429 -13.72373 -13.27018 -13.11180 -12.98219 -12.46194 -12.07918 -11.91104 -11.86912 -11.60820 -11.11295 -10.90038 -10.73431 -10.65348 -10.61397 -10.37887 -10.29394 -10.08560 -9.98064 -9.81282 -9.52918 -9.46829 -9.03791 -8.68981 -8.36367 -7.05468 -6.00140 -3.36466 0.26227 0.89831 1.29082 2.34413 2.55018 3.00281 3.15914 3.26177 3.42597 3.45208 3.48027 3.73930 4.27307 4.43308 4.47595 4.51608 4.64102 4.73819 4.88387 4.91714 4.96683 5.05415 5.14793 5.23894 5.26869 5.31603 5.40285 5.55617 5.55897 5.72632 5.88574 5.92615 5.94125 5.95393 6.00625 6.07096 6.21874 6.23374 6.30218 6.40612 6.49811 6.54414 6.56674 6.60988 6.72778 6.84140 7.30956 7.53260 7.90179 8.02515 8.27653 8.88054 9.66251 10.03325 11.15709 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.018576 B = 0.002175 C = 0.002030 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1506.935240 B =12869.000834 C =13788.956620 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.907 5.907 2 C 0.023 3.977 3 Si 0.881 3.119 4 H -0.289 1.289 5 H -0.302 1.302 6 H -0.270 1.270 7 C -0.260 4.260 8 H 0.086 0.914 9 N -0.606 5.606 10 C 0.130 3.870 11 C -0.141 4.141 12 C 0.151 3.849 13 N -0.722 5.722 14 C 0.592 3.408 15 O -0.521 6.521 16 C -0.075 4.075 17 C 0.072 3.928 18 N -0.478 5.478 19 C 0.272 3.728 20 C -0.021 4.021 21 C -0.108 4.108 22 C -0.116 4.116 23 C -0.108 4.108 24 C -0.119 4.119 25 C -0.074 4.074 26 N -0.547 5.547 27 H 0.422 0.578 28 C -0.142 4.142 29 C 0.150 3.850 30 H 0.263 0.737 31 H 0.029 0.971 32 H 0.078 0.922 33 H 0.059 0.941 34 H 0.070 0.930 35 H 0.087 0.913 36 H 0.390 0.610 37 H 0.189 0.811 38 H 0.120 0.880 39 H 0.129 0.871 40 H 0.126 0.874 41 H 0.130 0.870 42 H 0.139 0.861 43 H 0.063 0.937 44 H 0.061 0.939 45 H 0.027 0.973 46 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.900 -11.142 -20.615 28.891 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.550 5.550 2 C -0.176 4.176 3 Si 0.712 3.288 4 H -0.217 1.217 5 H -0.230 1.230 6 H -0.194 1.194 7 C -0.388 4.388 8 H 0.104 0.896 9 N -0.330 5.330 10 C 0.003 3.997 11 C -0.181 4.181 12 C 0.048 3.952 13 N -0.371 5.371 14 C 0.378 3.622 15 O -0.397 6.397 16 C -0.192 4.192 17 C -0.083 4.083 18 N -0.197 5.197 19 C 0.012 3.988 20 C -0.023 4.023 21 C -0.128 4.128 22 C -0.134 4.134 23 C -0.127 4.127 24 C -0.137 4.137 25 C -0.093 4.093 26 N -0.152 5.152 27 H 0.262 0.738 28 C -0.182 4.182 29 C 0.024 3.976 30 H 0.073 0.927 31 H 0.046 0.954 32 H 0.096 0.904 33 H 0.078 0.922 34 H 0.088 0.912 35 H 0.106 0.894 36 H 0.223 0.777 37 H 0.206 0.794 38 H 0.138 0.862 39 H 0.147 0.853 40 H 0.144 0.856 41 H 0.148 0.852 42 H 0.157 0.843 43 H 0.082 0.918 44 H 0.079 0.921 45 H 0.045 0.955 46 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 17.864 -11.308 -19.960 29.076 hybrid contribution -1.122 1.507 -0.359 1.913 sum 16.742 -9.801 -20.319 28.093 Atomic orbital electron populations 1.69835 1.05720 1.26589 1.52885 1.25292 0.95252 0.97590 0.99498 0.86977 0.80173 0.84680 0.76991 1.21684 1.23034 1.19447 1.18923 0.84875 0.94822 1.40208 0.89608 1.44407 1.08733 1.33373 1.46442 1.21301 0.97345 0.92049 0.88998 1.22362 0.97378 0.98392 0.99944 1.21079 0.94466 0.93152 0.86478 1.46217 1.15176 1.58493 1.17247 1.16798 0.81312 0.78356 0.85782 1.90875 1.63983 1.57775 1.27042 1.21679 0.98147 1.12497 0.86846 1.22923 0.93724 0.96310 0.95383 1.70281 1.23575 1.22339 1.03458 1.21358 0.85848 0.97981 0.93570 1.17630 0.95649 1.01026 0.88039 1.21098 0.96157 1.00275 0.95261 1.21047 0.99433 0.98506 0.94423 1.21353 0.93406 0.97770 1.00165 1.21183 0.98023 1.00091 0.94384 1.21257 0.98391 0.95224 0.94462 1.43404 1.16365 1.43968 1.11437 0.73843 1.22395 0.99442 0.97960 0.98380 1.20902 0.92385 0.91380 0.92934 0.92731 0.95364 0.90432 0.92224 0.91171 0.89449 0.77711 0.79401 0.86242 0.85305 0.85565 0.85214 0.84300 0.91848 0.92054 0.95543 0.91444 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -27.34 13.97 55.49 0.78 -26.56 16 2 C 0.02 0.64 5.23 -17.43 -0.09 0.55 16 3 Si 0.88 21.94 24.35 -169.99 -4.14 17.80 16 4 H -0.29 -6.86 6.62 56.52 0.37 -6.49 16 5 H -0.30 -7.70 7.11 56.52 0.40 -7.29 16 6 H -0.27 -6.64 6.64 56.52 0.38 -6.26 16 7 C -0.26 -7.10 10.03 -15.06 -0.15 -7.25 16 8 H 0.09 2.51 8.06 -52.49 -0.42 2.08 16 9 N -0.61 -13.97 2.77 -172.32 -0.48 -14.45 16 10 C 0.13 2.69 4.20 -3.71 -0.02 2.68 16 11 C -0.14 -2.26 5.55 -26.61 -0.15 -2.41 16 12 C 0.15 2.32 2.41 -67.89 -0.16 2.16 16 13 N -0.72 -8.89 5.07 -55.08 -0.28 -9.17 16 14 C 0.59 8.08 7.75 -12.86 -0.10 7.98 16 15 O -0.52 -8.92 16.57 5.19 0.09 -8.83 16 16 C -0.07 -0.87 7.11 -81.71 -0.58 -1.45 16 17 C 0.07 0.86 11.69 -17.21 -0.20 0.66 16 18 N -0.48 -5.69 10.79 -10.76 -0.12 -5.81 16 19 C 0.27 2.77 7.74 -154.88 -1.20 1.57 16 20 C -0.02 -0.18 5.87 -104.97 -0.62 -0.80 16 21 C -0.11 -0.72 9.69 -39.18 -0.38 -1.10 16 22 C -0.12 -0.66 10.03 -39.64 -0.40 -1.06 16 23 C -0.11 -0.58 10.04 -39.49 -0.40 -0.98 16 24 C -0.12 -0.71 10.03 -39.64 -0.40 -1.10 16 25 C -0.07 -0.57 9.69 -39.18 -0.38 -0.95 16 26 N -0.55 -4.90 5.99 -7.13 -0.04 -4.94 16 27 H 0.42 2.50 7.40 -40.82 -0.30 2.20 16 28 C -0.14 -2.34 5.65 -26.61 -0.15 -2.49 16 29 C 0.15 2.95 6.52 -3.71 -0.02 2.92 16 30 H 0.26 7.52 8.31 -40.82 -0.34 7.19 16 31 H 0.03 0.59 7.08 -51.93 -0.37 0.22 16 32 H 0.08 1.76 4.50 -51.93 -0.23 1.53 16 33 H 0.06 0.83 8.14 -51.93 -0.42 0.40 16 34 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 35 H 0.09 1.49 7.58 -51.93 -0.39 1.09 16 36 H 0.39 3.64 7.84 -40.82 -0.32 3.32 16 37 H 0.19 2.00 8.06 -52.49 -0.42 1.58 16 38 H 0.12 0.56 7.14 -52.49 -0.37 0.18 16 39 H 0.13 0.48 8.06 -52.48 -0.42 0.05 16 40 H 0.13 0.41 8.06 -52.49 -0.42 -0.02 16 41 H 0.13 0.49 8.06 -52.49 -0.42 0.07 16 42 H 0.14 1.08 7.82 -52.48 -0.41 0.67 16 43 H 0.06 1.06 8.14 -51.93 -0.42 0.63 16 44 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 45 H 0.03 0.52 8.14 -51.93 -0.42 0.09 16 46 H 0.07 1.32 7.93 -51.93 -0.41 0.90 16 LS Contribution 375.71 15.07 5.66 5.66 Total: -1.00 -33.81 375.71 -10.15 -43.96 By element: Atomic # 1 Polarization: 9.64 SS G_CDS: -6.23 Total: 3.41 kcal Atomic # 6 Polarization: 4.32 SS G_CDS: -5.39 Total: -1.07 kcal Atomic # 7 Polarization: -60.79 SS G_CDS: -0.14 Total: -60.93 kcal Atomic # 8 Polarization: -8.92 SS G_CDS: 0.09 Total: -8.83 kcal Atomic # 14 Polarization: 21.94 SS G_CDS: -4.14 Total: 17.80 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -33.81 -10.15 -43.96 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000609881710.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.191 kcal (2) G-P(sol) polarization free energy of solvation -33.809 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 79.383 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.155 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.964 kcal (6) G-S(sol) free energy of system = (1) + (5) 69.228 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds