Wall clock time and date at job start Sat Apr 11 2020 06:03:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86800 * 119.99713 * 2 1 4 4 H 1.48505 * 109.46898 * 272.93943 * 3 2 1 5 5 H 1.48502 * 109.47526 * 32.93725 * 3 2 1 6 6 H 1.48503 * 109.47449 * 152.94392 * 3 2 1 7 7 C 1.38804 * 120.00109 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00311 * 339.34703 * 7 2 1 9 9 N 1.36944 * 119.99949 * 159.34664 * 7 2 1 10 10 C 1.46922 * 120.62957 * 332.63179 * 9 7 2 11 11 C 1.53188 * 108.77809 * 233.58618 * 10 9 7 12 12 C 1.53039 * 109.31351 * 305.36530 * 11 10 9 13 13 N 1.46493 * 109.46490 * 181.38056 * 12 11 10 14 14 C 1.34780 * 120.00254 * 154.99962 * 13 12 11 15 15 O 1.21697 * 119.99605 * 0.02562 * 14 13 12 16 16 C 1.46654 * 119.99968 * 180.02562 * 14 13 12 17 17 C 1.37840 * 126.81785 * 180.02562 * 16 14 13 18 18 N 1.32965 * 107.98937 * 179.97438 * 17 16 14 19 19 C 1.31799 * 109.77678 * 0.02562 * 18 17 16 20 20 C 1.47824 * 125.50919 * 180.02562 * 19 18 17 21 21 C 1.39587 * 120.14410 * 179.70013 * 20 19 18 22 22 C 1.37953 * 119.84915 * 179.74073 * 21 20 19 23 23 C 1.38359 * 120.14911 * 0.50835 * 22 21 20 24 24 C 1.38364 * 120.29292 * 359.76255 * 23 22 21 25 25 C 1.37962 * 120.14111 * 359.97438 * 24 23 22 26 26 N 1.35909 * 108.98343 * 359.97438 * 19 18 17 27 27 H 0.96998 * 126.55132 * 180.26302 * 26 19 18 28 28 C 1.53043 * 109.53746 * 61.36345 * 12 11 10 29 29 C 1.46928 * 120.63128 * 152.60721 * 9 7 2 30 30 H 0.96999 * 119.99854 * 0.02562 * 1 2 3 31 31 H 1.09002 * 109.58853 * 113.79695 * 10 9 7 32 32 H 1.09000 * 109.70822 * 353.44655 * 10 9 7 33 33 H 1.08998 * 109.50242 * 185.41602 * 11 10 9 34 34 H 1.09003 * 109.49717 * 65.31686 * 11 10 9 35 35 H 1.08999 * 109.46266 * 301.36062 * 12 11 10 36 36 H 0.97004 * 120.00425 * 335.00874 * 13 12 11 37 37 H 1.07996 * 126.00614 * 359.94422 * 17 16 14 38 38 H 1.07999 * 120.07450 * 359.96943 * 21 20 19 39 39 H 1.08003 * 119.92862 * 180.24875 * 22 21 20 40 40 H 1.07998 * 119.85706 * 179.74143 * 23 22 21 41 41 H 1.07991 * 119.92828 * 180.02562 * 24 23 22 42 42 H 1.08005 * 120.06814 * 180.02562 * 25 24 23 43 43 H 1.09003 * 109.50092 * 58.58542 * 28 12 11 44 44 H 1.08998 * 109.50289 * 178.68674 * 28 12 11 45 45 H 1.08998 * 109.58996 * 246.20257 * 29 9 7 46 46 H 1.08996 * 109.58485 * 6.48726 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4354 2.0823 -1.3983 5 1 1.4800 2.6340 0.7612 6 1 3.5775 1.4232 0.6368 7 6 2.0102 -1.2021 0.0005 8 1 1.5224 -2.1072 0.3308 9 7 3.3137 -1.2403 -0.4178 10 6 3.8173 -0.2594 -1.3887 11 6 4.4623 -1.0096 -2.5582 12 6 5.5291 -1.9656 -2.0197 13 7 6.1709 -2.6608 -3.1381 14 6 7.4214 -3.1450 -3.0022 15 8 8.0171 -3.0051 -1.9503 16 6 8.0641 -3.8405 -4.1221 17 6 9.3289 -4.3883 -4.1377 18 7 9.5291 -4.9249 -5.3377 19 6 8.4606 -4.7486 -6.0890 20 6 8.3077 -5.2082 -7.4856 21 6 7.1198 -4.9656 -8.1773 22 6 6.9856 -5.3924 -9.4822 23 6 8.0213 -6.0689 -10.1021 24 6 9.1993 -6.3176 -9.4203 25 6 9.3485 -5.8914 -8.1167 26 7 7.5217 -4.0771 -5.3716 27 1 6.6384 -3.8170 -5.6767 28 6 4.8754 -2.9906 -1.0900 29 6 4.2351 -2.2628 0.0963 30 1 -0.4850 0.8400 -0.0004 31 1 4.5597 0.3799 -0.9107 32 1 2.9924 0.3508 -1.7564 33 1 4.9248 -0.2944 -3.2385 34 1 3.6997 -1.5780 -3.0906 35 1 6.2781 -1.3994 -1.4661 36 1 5.6961 -2.7726 -3.9765 37 1 10.0335 -4.3822 -3.3194 38 1 6.3090 -4.4416 -7.6932 39 1 6.0686 -5.2018 -10.0200 40 1 7.9096 -6.4046 -11.1225 41 1 10.0040 -6.8457 -9.9099 42 1 10.2687 -6.0858 -7.5857 43 1 4.1089 -3.5404 -1.6362 44 1 5.6318 -3.6854 -0.7252 45 1 5.0116 -1.7870 0.6953 46 1 3.6846 -2.9751 0.7107 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000609881710.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:03:53 Heat of formation + Delta-G solvation = 46.983205 kcal Electronic energy + Delta-G solvation = -28218.028586 eV Core-core repulsion = 24300.872248 eV Total energy + Delta-G solvation = -3917.156338 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -43.24627 -40.90329 -39.80007 -39.10304 -36.21132 -34.41290 -33.80594 -33.19456 -32.02994 -31.92097 -31.70757 -29.72377 -26.99926 -25.20294 -24.51872 -24.01421 -23.56422 -22.81174 -21.93431 -21.45989 -21.09611 -20.00311 -18.81723 -17.97421 -17.59936 -16.95460 -16.88037 -16.69828 -16.22194 -15.97937 -15.68947 -15.64161 -15.36579 -15.29455 -14.93992 -14.74099 -14.53032 -14.42475 -14.29943 -14.23873 -13.86574 -13.69057 -13.49529 -12.62993 -12.60470 -12.34307 -12.30852 -12.06540 -12.05808 -11.85074 -11.65117 -11.60270 -11.41799 -11.40496 -11.16254 -10.72076 -10.62606 -10.21426 -9.92004 -9.09569 -8.98516 -8.17217 -5.49851 -0.38752 0.44547 0.52135 1.28233 1.42720 1.50820 1.57249 1.77513 1.96292 2.17792 2.40290 2.91370 3.04485 3.05959 3.30153 3.61877 3.69964 3.85897 3.92207 3.98123 4.08827 4.16644 4.20657 4.28060 4.28975 4.43230 4.45653 4.52823 4.58616 4.64163 4.66298 4.82353 4.89149 4.90177 4.97238 5.04187 5.11250 5.12452 5.28012 5.32200 5.39153 5.47555 5.49555 5.57864 5.85449 5.96760 6.06968 6.11740 6.34055 6.70661 6.89263 6.99525 7.59890 8.00013 9.02445 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.018576 B = 0.002175 C = 0.002030 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1506.935240 B =12869.000834 C =13788.956620 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.955 5.955 2 C -0.034 4.034 3 Si 0.944 3.056 4 H -0.268 1.268 5 H -0.312 1.312 6 H -0.265 1.265 7 C -0.248 4.248 8 H 0.053 0.947 9 N -0.619 5.619 10 C 0.121 3.879 11 C -0.128 4.128 12 C 0.161 3.839 13 N -0.707 5.707 14 C 0.598 3.402 15 O -0.559 6.559 16 C -0.085 4.085 17 C 0.064 3.936 18 N -0.504 5.504 19 C 0.283 3.717 20 C -0.048 4.048 21 C -0.109 4.109 22 C -0.121 4.121 23 C -0.105 4.105 24 C -0.123 4.123 25 C -0.087 4.087 26 N -0.533 5.533 27 H 0.437 0.563 28 C -0.129 4.129 29 C 0.146 3.854 30 H 0.262 0.738 31 H 0.033 0.967 32 H 0.059 0.941 33 H 0.091 0.909 34 H 0.075 0.925 35 H 0.075 0.925 36 H 0.408 0.592 37 H 0.192 0.808 38 H 0.138 0.862 39 H 0.152 0.848 40 H 0.151 0.849 41 H 0.149 0.851 42 H 0.130 0.870 43 H 0.063 0.937 44 H 0.066 0.934 45 H 0.031 0.969 46 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.082 -11.217 -23.720 31.866 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.601 5.601 2 C -0.229 4.229 3 Si 0.773 3.227 4 H -0.194 1.194 5 H -0.241 1.241 6 H -0.190 1.190 7 C -0.377 4.377 8 H 0.071 0.929 9 N -0.343 5.343 10 C -0.005 4.005 11 C -0.167 4.167 12 C 0.057 3.943 13 N -0.357 5.357 14 C 0.385 3.615 15 O -0.438 6.438 16 C -0.202 4.202 17 C -0.092 4.092 18 N -0.223 5.223 19 C 0.023 3.977 20 C -0.050 4.050 21 C -0.129 4.129 22 C -0.139 4.139 23 C -0.123 4.123 24 C -0.141 4.141 25 C -0.107 4.107 26 N -0.139 5.139 27 H 0.279 0.721 28 C -0.169 4.169 29 C 0.021 3.979 30 H 0.071 0.929 31 H 0.051 0.949 32 H 0.077 0.923 33 H 0.109 0.891 34 H 0.093 0.907 35 H 0.094 0.906 36 H 0.244 0.756 37 H 0.209 0.791 38 H 0.156 0.844 39 H 0.170 0.830 40 H 0.169 0.831 41 H 0.167 0.833 42 H 0.148 0.852 43 H 0.082 0.918 44 H 0.085 0.915 45 H 0.049 0.951 46 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 19.061 -11.392 -23.121 32.058 hybrid contribution -1.454 1.367 0.498 2.057 sum 17.606 -10.025 -22.623 30.369 Atomic orbital electron populations 1.69959 1.07352 1.27232 1.55573 1.25891 0.95834 1.00844 1.00315 0.85958 0.78583 0.80309 0.77856 1.19438 1.24142 1.18980 1.18847 0.86558 0.93597 1.38742 0.92940 1.44509 1.07760 1.34534 1.47521 1.21374 0.96964 0.92060 0.90090 1.22170 0.97461 0.98742 0.98328 1.20764 0.93930 0.92666 0.86975 1.45883 1.14821 1.57808 1.17237 1.16912 0.81178 0.77786 0.85636 1.90858 1.64925 1.59310 1.28676 1.21246 0.98185 1.13473 0.87321 1.23124 0.94150 0.96238 0.95698 1.70288 1.24819 1.23479 1.03730 1.21728 0.85361 0.96610 0.94040 1.17765 0.96986 1.02774 0.87445 1.21364 0.95849 0.99973 0.95733 1.21402 1.00415 0.97932 0.94151 1.21737 0.92797 0.96582 1.01211 1.21444 0.99055 0.99899 0.93713 1.21343 0.98156 0.95816 0.95409 1.43250 1.16868 1.43434 1.10325 0.72074 1.22214 0.99339 0.97945 0.97402 1.21013 0.91858 0.90729 0.94312 0.92914 0.94948 0.92260 0.89090 0.90665 0.90642 0.75602 0.79107 0.84416 0.83045 0.83082 0.83317 0.85217 0.91777 0.91510 0.95115 0.92262 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -58.98 13.97 21.65 0.30 -58.68 16 2 C -0.03 -1.95 5.23 84.86 0.44 -1.50 16 3 Si 0.94 45.50 24.35 68.60 1.67 47.17 16 4 H -0.27 -11.89 6.62 99.48 0.66 -11.23 16 5 H -0.31 -15.46 7.11 99.48 0.71 -14.76 16 6 H -0.27 -12.43 6.64 99.48 0.66 -11.77 16 7 C -0.25 -13.77 10.03 84.03 0.84 -12.93 16 8 H 0.05 3.20 8.06 -2.91 -0.02 3.18 16 9 N -0.62 -28.20 2.77 -699.11 -1.94 -30.14 16 10 C 0.12 4.78 4.20 86.36 0.36 5.14 16 11 C -0.13 -3.70 5.55 30.67 0.17 -3.53 16 12 C 0.16 4.55 2.41 45.02 0.11 4.66 16 13 N -0.71 -15.55 5.07 -446.40 -2.26 -17.81 16 14 C 0.60 15.35 7.75 86.44 0.67 16.02 16 15 O -0.56 -18.69 16.57 -4.34 -0.07 -18.76 16 16 C -0.09 -1.86 7.11 40.23 0.29 -1.58 16 17 C 0.06 1.50 11.69 84.43 0.99 2.48 16 18 N -0.50 -11.80 10.79 -187.95 -2.03 -13.82 16 19 C 0.28 5.40 7.74 136.59 1.06 6.46 16 20 C -0.05 -0.73 5.87 -20.09 -0.12 -0.85 16 21 C -0.11 -1.16 9.69 22.53 0.22 -0.94 16 22 C -0.12 -0.97 10.03 22.23 0.22 -0.75 16 23 C -0.10 -0.79 10.04 22.33 0.22 -0.57 16 24 C -0.12 -1.20 10.03 22.23 0.22 -0.98 16 25 C -0.09 -1.26 9.69 22.53 0.22 -1.04 16 26 N -0.53 -8.49 5.99 -176.46 -1.06 -9.54 16 27 H 0.44 3.91 7.40 -92.71 -0.69 3.22 16 28 C -0.13 -4.07 5.65 30.67 0.17 -3.89 16 29 C 0.15 5.66 6.52 86.36 0.56 6.22 16 30 H 0.26 15.37 8.31 -92.71 -0.77 14.60 16 31 H 0.03 1.27 7.08 -2.39 -0.02 1.25 16 32 H 0.06 2.58 4.50 -2.39 -0.01 2.57 16 33 H 0.09 2.13 8.14 -2.39 -0.02 2.11 16 34 H 0.07 2.14 8.14 -2.39 -0.02 2.12 16 35 H 0.08 2.40 7.58 -2.39 -0.02 2.38 16 36 H 0.41 6.19 7.84 -92.71 -0.73 5.46 16 37 H 0.19 4.12 8.06 -2.91 -0.02 4.10 16 38 H 0.14 0.83 7.14 -2.91 -0.02 0.81 16 39 H 0.15 0.50 8.06 -2.91 -0.02 0.48 16 40 H 0.15 0.37 8.06 -2.91 -0.02 0.34 16 41 H 0.15 0.78 8.06 -2.92 -0.02 0.75 16 42 H 0.13 2.02 7.82 -2.91 -0.02 1.99 16 43 H 0.06 2.02 8.14 -2.39 -0.02 2.00 16 44 H 0.07 2.06 8.14 -2.39 -0.02 2.04 16 45 H 0.03 1.17 8.14 -2.39 -0.02 1.15 16 46 H 0.06 2.34 7.93 -2.39 -0.02 2.32 16 Total: -1.00 -74.82 375.71 0.79 -74.03 By element: Atomic # 1 Polarization: 15.61 SS G_CDS: -0.48 Total: 15.13 kcal Atomic # 6 Polarization: 5.77 SS G_CDS: 6.65 Total: 12.42 kcal Atomic # 7 Polarization: -123.01 SS G_CDS: -6.98 Total: -130.00 kcal Atomic # 8 Polarization: -18.69 SS G_CDS: -0.07 Total: -18.76 kcal Atomic # 14 Polarization: 45.50 SS G_CDS: 1.67 Total: 47.17 kcal Total: -74.82 0.79 -74.03 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000609881710.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.016 kcal (2) G-P(sol) polarization free energy of solvation -74.821 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.196 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.788 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.033 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.983 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds