Wall clock time and date at job start Sat Apr 11 2020 06:03:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86804 * 119.99577 * 2 1 4 4 H 1.48500 * 109.47279 * 270.00305 * 3 2 1 5 5 H 1.48502 * 109.46996 * 29.99953 * 3 2 1 6 6 H 1.48498 * 109.47170 * 150.00058 * 3 2 1 7 7 C 1.37869 * 120.00475 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00148 * 186.11862 * 7 2 1 9 9 C 1.50703 * 120.00025 * 6.11841 * 7 2 1 10 10 H 1.08997 * 109.47274 * 25.84895 * 9 7 2 11 11 C 1.52996 * 109.47355 * 145.85460 * 9 7 2 12 12 C 1.50700 * 109.47022 * 294.99922 * 11 9 7 13 13 O 1.21286 * 120.00190 * 0.02562 * 12 11 9 14 14 N 1.34772 * 120.00143 * 180.02562 * 12 11 9 15 15 C 1.46502 * 120.00256 * 179.97438 * 14 12 11 16 16 C 1.52994 * 109.47502 * 179.97438 * 15 14 12 17 17 N 1.46502 * 109.47502 * 180.02562 * 16 15 14 18 18 C 1.38404 * 120.00032 * 179.97438 * 17 16 15 19 19 N 1.32495 * 119.21707 * 359.46083 * 18 17 16 20 20 C 1.32276 * 120.73553 * 179.71667 * 19 18 17 21 21 C 1.38606 * 119.19733 * 0.54121 * 20 19 18 22 22 C 1.38595 * 118.56036 * 359.73116 * 21 20 19 23 23 N 1.32272 * 119.19765 * 0.02562 * 22 21 20 24 24 C 1.50701 * 109.46846 * 265.85373 * 9 7 2 25 25 C 1.38239 * 120.00107 * 303.45661 * 24 9 7 26 26 C 1.38236 * 120.00115 * 179.81245 * 25 24 9 27 27 C 1.38237 * 119.99845 * 0.39700 * 26 25 24 28 28 C 1.38232 * 120.00021 * 359.85520 * 27 26 25 29 29 C 1.38237 * 120.00092 * 123.73252 * 24 9 7 30 30 H 0.96996 * 120.00580 * 359.97438 * 1 2 3 31 31 H 1.09000 * 109.47522 * 174.99726 * 11 9 7 32 32 H 1.09002 * 109.47203 * 54.99769 * 11 9 7 33 33 H 0.96999 * 120.00159 * 359.97438 * 14 12 11 34 34 H 1.09008 * 109.46864 * 59.99599 * 15 14 12 35 35 H 1.08994 * 109.47184 * 300.00043 * 15 14 12 36 36 H 1.09000 * 109.47338 * 59.99778 * 16 15 14 37 37 H 1.09002 * 109.47019 * 300.00047 * 16 15 14 38 38 H 0.97001 * 119.99420 * 359.73022 * 17 16 15 39 39 H 1.08000 * 120.40188 * 180.29709 * 20 19 18 40 40 H 1.08007 * 120.71435 * 179.75208 * 21 20 19 41 41 H 1.08005 * 120.40134 * 180.02562 * 22 21 20 42 42 H 1.07999 * 119.99670 * 359.97438 * 25 24 9 43 43 H 1.07996 * 120.00338 * 180.22610 * 26 25 24 44 44 H 1.07994 * 120.00023 * 179.83242 * 27 26 25 45 45 H 1.08004 * 120.00277 * 179.97438 * 28 27 26 46 46 H 1.07996 * 119.99886 * 359.97438 * 29 24 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0466 -1.4001 5 1 1.4464 2.6527 0.7000 6 1 3.5466 1.4404 0.7000 7 6 2.0046 -1.1939 -0.0005 8 1 3.0800 -1.1966 0.0992 9 6 1.2576 -2.4953 -0.1402 10 1 0.3202 -2.3214 -0.6685 11 6 2.1105 -3.4908 -0.9291 12 6 2.2987 -2.9861 -2.3366 13 8 1.8002 -1.9336 -2.6752 14 7 3.0210 -3.7044 -3.2191 15 6 3.2035 -3.2140 -4.5875 16 6 4.0565 -4.2094 -5.3765 17 7 4.2395 -3.7188 -6.7447 18 6 4.9823 -4.4558 -7.6506 19 7 5.5298 -5.5976 -7.2608 20 6 6.2408 -6.3287 -8.1032 21 6 6.4188 -5.8814 -9.4030 22 6 5.8368 -4.6800 -9.7758 23 7 5.1337 -4.0000 -8.8854 24 6 0.9666 -3.0567 1.2277 25 6 2.0020 -3.2922 2.1128 26 6 1.7347 -3.8036 3.3690 27 6 0.4327 -4.0871 3.7371 28 6 -0.6021 -3.8565 2.8501 29 6 -0.3352 -3.3416 1.5953 30 1 -0.4851 0.8400 0.0004 31 1 1.6097 -4.4586 -0.9541 32 1 3.0829 -3.5972 -0.4483 33 1 3.4201 -4.5460 -2.9483 34 1 3.7045 -2.2462 -4.5629 35 1 2.2310 -3.1076 -5.0680 36 1 3.5560 -5.1773 -5.4011 37 1 5.0290 -4.3154 -4.8958 38 1 3.8372 -2.8791 -7.0167 39 1 6.6808 -7.2610 -7.7810 40 1 6.9981 -6.4568 -10.1100 41 1 5.9560 -4.3037 -10.7811 42 1 3.0195 -3.0742 1.8239 43 1 2.5432 -3.9841 4.0619 44 1 0.2241 -4.4891 4.7175 45 1 -1.6193 -4.0785 3.1375 46 1 -1.1437 -3.1614 0.9024 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000619428084.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:03:58 Heat of formation + Delta-G solvation = 44.430792 kcal Electronic energy + Delta-G solvation = -27594.606996 eV Core-core repulsion = 23677.339978 eV Total energy + Delta-G solvation = -3917.267019 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.11902 -39.14840 -38.20884 -36.75522 -34.37455 -33.88487 -33.76569 -31.56242 -31.22960 -29.99178 -29.21281 -27.95471 -25.53389 -24.86251 -23.60149 -22.77656 -22.18484 -21.59167 -20.21588 -19.24688 -18.47345 -17.63089 -16.62020 -16.29735 -16.07402 -15.91991 -15.69368 -15.34171 -14.98181 -14.77974 -14.48052 -14.31756 -14.12417 -13.90890 -13.74647 -13.66350 -12.93953 -12.63367 -12.40544 -12.20897 -11.92949 -11.81191 -11.60696 -11.55414 -11.24353 -11.08890 -10.85868 -10.70994 -10.62722 -10.55236 -10.24360 -10.04833 -9.44029 -9.37191 -9.08093 -8.90462 -8.63955 -8.37549 -8.32284 -8.02730 -7.59136 -5.92244 -3.91787 0.91183 0.93914 2.30597 2.35769 2.50359 3.39480 3.45093 3.46742 3.52888 3.66734 3.73549 3.96336 4.38471 4.53221 4.55215 4.66739 4.76937 4.95605 4.96468 5.00270 5.33443 5.41110 5.50246 5.63648 5.67940 5.74534 5.83923 5.85307 5.89331 6.05303 6.10411 6.20512 6.30335 6.42985 6.51706 6.55214 6.78489 6.81934 6.85427 6.92525 7.06221 7.18561 7.32783 7.46020 7.54248 7.86904 7.96691 8.02223 8.07148 8.08506 8.39681 9.04875 9.08753 9.70346 11.17960 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.013629 B = 0.002155 C = 0.001942 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2053.932633 B =12987.792849 C =14416.299511 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.881 5.881 2 C 0.078 3.922 3 Si 0.886 3.114 4 H -0.281 1.281 5 H -0.289 1.289 6 H -0.276 1.276 7 C -0.492 4.492 8 H 0.050 0.950 9 C 0.080 3.920 10 H 0.072 0.928 11 C -0.121 4.121 12 C 0.514 3.486 13 O -0.493 6.493 14 N -0.747 5.747 15 C 0.111 3.889 16 C 0.129 3.871 17 N -0.693 5.693 18 C 0.566 3.434 19 N -0.568 5.568 20 C 0.192 3.808 21 C -0.299 4.299 22 C 0.193 3.807 23 N -0.573 5.573 24 C -0.021 4.021 25 C -0.115 4.115 26 C -0.132 4.132 27 C -0.156 4.156 28 C -0.128 4.128 29 C -0.118 4.118 30 H 0.259 0.741 31 H 0.066 0.934 32 H 0.077 0.923 33 H 0.395 0.605 34 H 0.069 0.931 35 H 0.068 0.932 36 H 0.073 0.927 37 H 0.073 0.927 38 H 0.417 0.583 39 H 0.166 0.834 40 H 0.142 0.858 41 H 0.166 0.834 42 H 0.113 0.887 43 H 0.105 0.895 44 H 0.103 0.897 45 H 0.105 0.895 46 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.059 -14.634 -12.673 21.816 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.518 5.518 2 C -0.125 4.125 3 Si 0.715 3.285 4 H -0.207 1.207 5 H -0.215 1.215 6 H -0.201 1.201 7 C -0.530 4.530 8 H 0.069 0.931 9 C 0.061 3.939 10 H 0.090 0.910 11 C -0.162 4.162 12 C 0.300 3.700 13 O -0.363 6.363 14 N -0.405 5.405 15 C -0.014 4.014 16 C 0.004 3.996 17 N -0.330 5.330 18 C 0.209 3.791 19 N -0.291 5.291 20 C 0.024 3.976 21 C -0.325 4.325 22 C 0.025 3.975 23 N -0.295 5.295 24 C -0.022 4.022 25 C -0.133 4.133 26 C -0.150 4.150 27 C -0.174 4.174 28 C -0.146 4.146 29 C -0.137 4.137 30 H 0.069 0.931 31 H 0.085 0.915 32 H 0.096 0.904 33 H 0.228 0.772 34 H 0.088 0.912 35 H 0.087 0.913 36 H 0.091 0.909 37 H 0.092 0.908 38 H 0.255 0.745 39 H 0.183 0.817 40 H 0.160 0.840 41 H 0.183 0.817 42 H 0.131 0.869 43 H 0.123 0.877 44 H 0.122 0.878 45 H 0.123 0.877 46 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges 8.917 -13.188 -12.022 19.949 hybrid contribution 1.085 0.475 -0.566 1.313 sum 10.002 -12.713 -12.588 20.497 Atomic orbital electron populations 1.69909 1.05930 1.26409 1.49581 1.24808 0.94657 0.98845 0.94178 0.86700 0.79836 0.84021 0.77989 1.20667 1.21519 1.20132 1.20681 0.92413 0.89612 1.50269 0.93146 1.17834 0.97541 0.91406 0.87138 0.91015 1.21796 1.02436 1.00022 0.91927 1.20942 0.77479 0.84341 0.87197 1.90774 1.45969 1.21275 1.78318 1.46011 1.57390 1.26240 1.10810 1.21218 0.99685 0.97063 0.83472 1.21417 1.00502 0.97498 0.80199 1.43950 1.54516 1.24755 1.09781 1.19288 0.87608 0.86347 0.85821 1.67959 1.15428 1.07398 1.38322 1.22950 0.88967 0.96693 0.88951 1.22520 1.09128 1.01213 0.99597 1.22914 0.87218 0.89575 0.97829 1.67905 1.22794 1.36550 1.02248 1.20735 0.91966 0.90414 0.99063 1.20944 0.99393 0.99541 0.93448 1.20972 0.96061 1.01272 0.96686 1.20790 0.93351 1.04266 0.98976 1.20982 0.97964 1.00988 0.94690 1.21086 0.97079 0.99321 0.96183 0.93141 0.91528 0.90414 0.77185 0.91241 0.91339 0.90897 0.90833 0.74507 0.81670 0.83975 0.81697 0.86912 0.87693 0.87837 0.87667 0.86855 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.95 12.87 55.43 0.71 -25.23 16 2 C 0.08 2.22 5.45 -17.82 -0.10 2.12 16 3 Si 0.89 22.33 29.54 -169.99 -5.02 17.31 16 4 H -0.28 -7.17 7.11 56.52 0.40 -6.77 16 5 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 6 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 7 C -0.49 -13.16 6.37 -34.44 -0.22 -13.38 16 8 H 0.05 1.34 7.82 -52.49 -0.41 0.93 16 9 C 0.08 1.89 1.67 -92.92 -0.16 1.73 16 10 H 0.07 1.95 6.98 -51.93 -0.36 1.59 16 11 C -0.12 -2.28 4.95 -27.88 -0.14 -2.42 16 12 C 0.51 9.90 7.58 -10.99 -0.08 9.82 16 13 O -0.49 -12.08 14.98 5.55 0.08 -12.00 16 14 N -0.75 -10.42 5.56 -60.29 -0.33 -10.75 16 15 C 0.11 1.39 5.79 -4.04 -0.02 1.37 16 16 C 0.13 1.31 5.76 -4.04 -0.02 1.29 16 17 N -0.69 -7.47 5.70 -62.31 -0.36 -7.82 16 18 C 0.57 6.62 8.43 -322.81 -2.72 3.90 16 19 N -0.57 -6.21 9.59 -13.93 -0.13 -6.34 16 20 C 0.19 1.51 11.30 -17.22 -0.19 1.32 16 21 C -0.30 -1.97 10.16 -39.31 -0.40 -2.37 16 22 C 0.19 1.53 11.30 -17.23 -0.19 1.34 16 23 N -0.57 -6.38 10.46 -13.93 -0.15 -6.53 16 24 C -0.02 -0.46 4.77 -104.62 -0.50 -0.96 16 25 C -0.12 -2.31 8.86 -39.58 -0.35 -2.66 16 26 C -0.13 -2.35 10.05 -39.58 -0.40 -2.75 16 27 C -0.16 -2.70 10.05 -39.58 -0.40 -3.10 16 28 C -0.13 -2.36 10.05 -39.58 -0.40 -2.76 16 29 C -0.12 -2.49 9.67 -39.58 -0.38 -2.88 16 30 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 31 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 32 H 0.08 1.34 7.77 -51.93 -0.40 0.94 16 33 H 0.39 4.20 8.47 -40.82 -0.35 3.86 16 34 H 0.07 0.97 8.14 -51.92 -0.42 0.55 16 35 H 0.07 0.92 8.14 -51.93 -0.42 0.49 16 36 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 37 H 0.07 0.76 8.14 -51.93 -0.42 0.33 16 38 H 0.42 4.19 8.59 -40.82 -0.35 3.84 16 39 H 0.17 0.75 8.06 -52.49 -0.42 0.33 16 40 H 0.14 0.50 8.06 -52.48 -0.42 0.08 16 41 H 0.17 0.76 8.06 -52.48 -0.42 0.34 16 42 H 0.11 2.18 7.76 -52.49 -0.41 1.77 16 43 H 0.10 1.58 8.06 -52.49 -0.42 1.16 16 44 H 0.10 1.50 8.06 -52.49 -0.42 1.08 16 45 H 0.11 1.66 8.06 -52.48 -0.42 1.24 16 46 H 0.11 2.41 7.95 -52.49 -0.42 1.99 16 LS Contribution 394.92 15.07 5.95 5.95 Total: -1.00 -34.89 394.92 -12.40 -47.29 By element: Atomic # 1 Polarization: 15.00 SS G_CDS: -6.48 Total: 8.52 kcal Atomic # 6 Polarization: -3.71 SS G_CDS: -6.67 Total: -10.39 kcal Atomic # 7 Polarization: -56.42 SS G_CDS: -0.26 Total: -56.67 kcal Atomic # 8 Polarization: -12.08 SS G_CDS: 0.08 Total: -12.00 kcal Atomic # 14 Polarization: 22.33 SS G_CDS: -5.02 Total: 17.31 kcal Total LS contribution 5.95 Total: 5.95 kcal Total: -34.89 -12.40 -47.29 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000619428084.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.720 kcal (2) G-P(sol) polarization free energy of solvation -34.888 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.832 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.401 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.289 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.431 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds