Wall clock time and date at job start Sat Apr 11 2020 06:03:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31507 * 1 3 3 Si 1.86801 * 120.00212 * 2 1 4 4 H 1.48503 * 109.46742 * 94.53535 * 3 2 1 5 5 H 1.48500 * 109.47460 * 214.53151 * 3 2 1 6 6 H 1.48499 * 109.46928 * 334.53536 * 3 2 1 7 7 C 1.37886 * 120.00030 * 180.28070 * 2 1 3 8 8 H 1.08002 * 119.99771 * 6.61783 * 7 2 1 9 9 C 1.50698 * 120.00006 * 186.61954 * 7 2 1 10 10 H 1.08995 * 109.47523 * 326.94485 * 9 7 2 11 11 C 1.52999 * 109.47080 * 206.93845 * 9 7 2 12 12 C 1.50700 * 109.47010 * 65.00685 * 11 9 7 13 13 O 1.21282 * 120.00069 * 359.97438 * 12 11 9 14 14 N 1.34777 * 120.00194 * 180.02562 * 12 11 9 15 15 C 1.46505 * 119.99960 * 180.02562 * 14 12 11 16 16 C 1.52993 * 109.47066 * 179.97438 * 15 14 12 17 17 N 1.46497 * 109.47365 * 179.97438 * 16 15 14 18 18 C 1.38402 * 120.00216 * 179.97438 * 17 16 15 19 19 N 1.32495 * 119.21737 * 359.73195 * 18 17 16 20 20 C 1.32285 * 120.73875 * 179.71557 * 19 18 17 21 21 C 1.38598 * 119.19557 * 0.54654 * 20 19 18 22 22 C 1.38605 * 118.56203 * 359.72898 * 21 20 19 23 23 N 1.32280 * 119.19463 * 359.97438 * 22 21 20 24 24 C 1.50706 * 109.46664 * 86.94374 * 9 7 2 25 25 C 1.38233 * 119.99857 * 57.92474 * 24 9 7 26 26 C 1.38240 * 119.99757 * 179.78388 * 25 24 9 27 27 C 1.38239 * 119.99979 * 0.44453 * 26 25 24 28 28 C 1.38242 * 120.00017 * 359.80708 * 27 26 25 29 29 C 1.38230 * 119.99928 * 238.19148 * 24 9 7 30 30 H 0.96994 * 119.99996 * 359.97438 * 1 2 3 31 31 H 1.09000 * 109.47081 * 185.00338 * 11 9 7 32 32 H 1.09000 * 109.47450 * 305.00596 * 11 9 7 33 33 H 0.96995 * 119.99984 * 359.97438 * 14 12 11 34 34 H 1.09000 * 109.46885 * 299.99228 * 15 14 12 35 35 H 1.09000 * 109.47350 * 59.99305 * 15 14 12 36 36 H 1.09000 * 109.46918 * 299.99551 * 16 15 14 37 37 H 1.09005 * 109.47577 * 59.99242 * 16 15 14 38 38 H 0.97006 * 119.99925 * 0.02562 * 17 16 15 39 39 H 1.07992 * 120.39689 * 180.30123 * 20 19 18 40 40 H 1.08004 * 120.72381 * 179.74962 * 21 20 19 41 41 H 1.07996 * 120.40361 * 180.02562 * 22 21 20 42 42 H 1.07994 * 120.00554 * 359.97438 * 25 24 9 43 43 H 1.07996 * 120.00426 * 180.26872 * 26 25 24 44 44 H 1.08000 * 120.00114 * 179.82966 * 27 26 25 45 45 H 1.07993 * 120.00100 * 180.02562 * 28 27 26 46 46 H 1.07999 * 120.00162 * 359.97438 * 29 24 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.5925 1.9909 1.3957 5 1 3.4955 1.4697 -0.7936 6 1 1.4019 2.6784 -0.6020 7 6 2.0045 -1.1941 -0.0059 8 1 1.4699 -2.1258 -0.1182 9 6 3.5040 -1.1992 0.1446 10 1 3.9190 -0.3058 -0.3219 11 6 4.0803 -2.4435 -0.5339 12 6 3.8289 -2.3685 -2.0179 13 8 3.2457 -1.4140 -2.4866 14 7 4.2513 -3.3625 -2.8241 15 6 4.0073 -3.2893 -4.2668 16 6 4.5835 -4.5336 -4.9453 17 7 4.3391 -4.4607 -6.3879 18 6 4.7736 -5.4810 -7.2159 19 7 5.4138 -6.5140 -6.6880 20 6 5.8374 -7.5085 -7.4506 21 6 5.6141 -7.4547 -8.8174 22 6 4.9462 -6.3570 -9.3371 23 7 4.5438 -5.3994 -8.5181 24 6 3.8618 -1.2140 1.6084 25 6 3.4059 -2.2350 2.4211 26 6 3.7379 -2.2510 3.7630 27 6 4.5181 -1.2409 4.2940 28 6 4.9697 -0.2170 3.4823 29 6 4.6413 -0.2035 2.1396 30 1 -0.4850 0.8400 0.0004 31 1 5.1534 -2.4938 -0.3493 32 1 3.5998 -3.3339 -0.1285 33 1 4.7174 -4.1261 -2.4492 34 1 2.9343 -3.2383 -4.4517 35 1 4.4885 -2.3991 -4.6720 36 1 5.6565 -4.5842 -4.7604 37 1 4.1027 -5.4240 -4.5401 38 1 3.8733 -3.6969 -6.7629 39 1 6.3544 -8.3500 -7.0139 40 1 5.9528 -8.2511 -9.4636 41 1 4.7559 -6.2848 -10.3978 42 1 2.7930 -3.0219 2.0072 43 1 3.3854 -3.0509 4.3970 44 1 4.7752 -1.2518 5.3429 45 1 5.5796 0.5719 3.8971 46 1 4.9943 0.5963 1.5055 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000619428085.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:03:59 Heat of formation + Delta-G solvation = 23.074527 kcal Electronic energy + Delta-G solvation = -27653.944059 eV Core-core repulsion = 23735.750963 eV Total energy + Delta-G solvation = -3918.193096 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.78790 -40.79350 -39.82830 -37.73230 -35.95535 -35.32129 -34.55407 -33.72946 -32.19625 -31.59904 -30.63181 -29.27729 -27.57560 -25.58517 -24.64415 -23.97499 -23.32394 -23.14515 -21.75132 -20.78467 -19.21809 -19.03213 -18.43802 -17.94543 -17.22076 -16.92249 -16.88883 -16.48879 -16.31232 -16.03343 -15.79193 -15.57400 -15.38039 -15.16272 -15.08858 -14.75756 -14.44253 -14.20736 -14.12991 -13.89647 -13.71255 -13.29586 -13.19873 -12.83050 -12.78392 -12.73238 -12.08867 -11.89020 -11.86915 -11.79898 -11.79282 -11.48187 -11.37219 -11.03712 -10.73135 -10.58543 -10.05723 -10.02141 -9.61796 -9.30292 -9.09370 -8.23263 -6.18338 0.29841 0.30128 0.68461 0.73694 1.28813 1.33093 1.41022 1.64926 1.91130 2.38729 2.54615 2.99923 3.07665 3.22300 3.32708 3.67399 3.84214 3.94581 4.02764 4.11324 4.13060 4.30831 4.32047 4.38602 4.44075 4.45042 4.50895 4.53950 4.65729 4.83873 4.84172 4.87002 4.88933 4.95021 5.09379 5.23108 5.39301 5.40282 5.41540 5.52807 5.69664 5.77109 5.81256 5.82431 6.03062 6.12055 6.33597 6.35875 6.46852 6.71447 6.80495 7.36558 7.43750 7.51932 8.93985 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.016096 B = 0.002108 C = 0.001945 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1739.152333 B =13279.235993 C =14391.507663 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.953 5.953 2 C 0.020 3.980 3 Si 0.919 3.081 4 H -0.261 1.261 5 H -0.255 1.255 6 H -0.300 1.300 7 C -0.459 4.459 8 H 0.036 0.964 9 C 0.048 3.952 10 H 0.034 0.966 11 C -0.111 4.111 12 C 0.512 3.488 13 O -0.561 6.561 14 N -0.722 5.722 15 C 0.116 3.884 16 C 0.149 3.851 17 N -0.701 5.701 18 C 0.544 3.456 19 N -0.589 5.589 20 C 0.178 3.822 21 C -0.283 4.283 22 C 0.177 3.823 23 N -0.600 5.600 24 C -0.063 4.063 25 C -0.117 4.117 26 C -0.124 4.124 27 C -0.140 4.140 28 C -0.125 4.125 29 C -0.157 4.157 30 H 0.258 0.742 31 H 0.109 0.891 32 H 0.099 0.901 33 H 0.417 0.583 34 H 0.053 0.947 35 H 0.063 0.937 36 H 0.081 0.919 37 H 0.075 0.925 38 H 0.416 0.584 39 H 0.198 0.802 40 H 0.179 0.821 41 H 0.195 0.805 42 H 0.113 0.887 43 H 0.140 0.860 44 H 0.146 0.854 45 H 0.139 0.861 46 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.336 -16.405 -9.465 25.676 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.595 5.595 2 C -0.176 4.176 3 Si 0.746 3.254 4 H -0.186 1.186 5 H -0.180 1.180 6 H -0.227 1.227 7 C -0.497 4.497 8 H 0.054 0.946 9 C 0.029 3.971 10 H 0.052 0.948 11 C -0.150 4.150 12 C 0.299 3.701 13 O -0.437 6.437 14 N -0.378 5.378 15 C -0.009 4.009 16 C 0.024 3.976 17 N -0.339 5.339 18 C 0.187 3.813 19 N -0.313 5.313 20 C 0.012 3.988 21 C -0.308 4.308 22 C 0.011 3.989 23 N -0.324 5.324 24 C -0.064 4.064 25 C -0.135 4.135 26 C -0.142 4.142 27 C -0.158 4.158 28 C -0.142 4.142 29 C -0.175 4.175 30 H 0.067 0.933 31 H 0.127 0.873 32 H 0.118 0.882 33 H 0.254 0.746 34 H 0.072 0.928 35 H 0.082 0.918 36 H 0.099 0.901 37 H 0.093 0.907 38 H 0.254 0.746 39 H 0.214 0.786 40 H 0.196 0.804 41 H 0.212 0.788 42 H 0.131 0.869 43 H 0.158 0.842 44 H 0.164 0.836 45 H 0.157 0.843 46 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges 16.493 -14.864 -8.993 23.955 hybrid contribution -0.315 0.534 -0.900 1.093 sum 16.179 -14.330 -9.893 23.769 Atomic orbital electron populations 1.70027 1.07885 1.27152 1.54403 1.25598 0.95083 1.02093 0.94840 0.86130 0.79594 0.80606 0.79083 1.18562 1.18005 1.22692 1.20832 0.90467 0.92579 1.45788 0.94573 1.18114 0.94685 0.95417 0.88868 0.94812 1.21565 1.02817 1.00760 0.89905 1.21069 0.77279 0.81754 0.89977 1.90734 1.40896 1.34745 1.77326 1.45628 1.61208 1.24449 1.06516 1.21205 1.00457 0.98048 0.81231 1.21155 1.01388 0.96750 0.78299 1.43913 1.62438 1.21620 1.05887 1.19464 0.88505 0.87412 0.85936 1.67974 1.17859 1.03896 1.41602 1.23619 0.89992 0.94144 0.91051 1.22919 1.07017 1.02997 0.97836 1.23567 0.87768 0.87029 1.00547 1.67910 1.27751 1.33208 1.03493 1.20503 0.93970 0.94396 0.97524 1.21023 0.99287 0.98981 0.94252 1.21415 0.98392 0.99642 0.94732 1.21339 0.99238 0.94675 1.00560 1.21328 1.00517 0.99367 0.93038 1.21193 1.00721 0.98932 0.96680 0.93279 0.87303 0.88230 0.74635 0.92820 0.91827 0.90075 0.90683 0.74614 0.78560 0.80391 0.78819 0.86907 0.84172 0.83580 0.84340 0.87659 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -62.66 13.96 21.45 0.30 -62.36 16 2 C 0.02 1.22 5.47 84.66 0.46 1.68 16 3 Si 0.92 48.57 26.62 68.60 1.83 50.39 16 4 H -0.26 -12.99 7.11 99.48 0.71 -12.28 16 5 H -0.26 -13.08 6.29 99.48 0.63 -12.46 16 6 H -0.30 -16.01 7.11 99.48 0.71 -15.30 16 7 C -0.46 -26.13 6.97 25.60 0.18 -25.95 16 8 H 0.04 2.26 8.06 -2.91 -0.02 2.23 16 9 C 0.05 2.22 1.21 -12.29 -0.01 2.20 16 10 H 0.03 1.68 4.88 -2.39 -0.01 1.67 16 11 C -0.11 -3.93 4.93 29.85 0.15 -3.78 16 12 C 0.51 19.49 7.58 87.66 0.66 20.15 16 13 O -0.56 -28.06 14.98 -3.03 -0.05 -28.10 16 14 N -0.72 -19.31 5.56 -463.06 -2.57 -21.88 16 15 C 0.12 2.91 5.79 86.38 0.50 3.41 16 16 C 0.15 2.95 5.76 86.38 0.50 3.44 16 17 N -0.70 -15.22 5.70 -351.06 -2.00 -17.23 16 18 C 0.54 12.52 8.42 261.49 2.20 14.72 16 19 N -0.59 -12.15 9.59 -198.00 -1.90 -14.05 16 20 C 0.18 2.38 11.30 84.71 0.96 3.34 16 21 C -0.28 -2.91 10.16 22.44 0.23 -2.68 16 22 C 0.18 2.50 11.30 84.71 0.96 3.46 16 23 N -0.60 -13.10 10.46 -197.99 -2.07 -15.17 16 24 C -0.06 -2.60 4.52 -19.87 -0.09 -2.69 16 25 C -0.12 -4.38 8.86 22.27 0.20 -4.18 16 26 C -0.12 -3.79 10.05 22.27 0.22 -3.57 16 27 C -0.14 -3.95 10.05 22.27 0.22 -3.72 16 28 C -0.12 -3.85 10.05 22.27 0.22 -3.63 16 29 C -0.16 -5.91 9.08 22.27 0.20 -5.71 16 30 H 0.26 16.22 8.31 -92.71 -0.77 15.45 16 31 H 0.11 3.03 8.14 -2.39 -0.02 3.01 16 32 H 0.10 3.25 7.69 -2.39 -0.02 3.24 16 33 H 0.42 7.79 8.47 -92.71 -0.79 7.00 16 34 H 0.05 1.58 8.14 -2.39 -0.02 1.56 16 35 H 0.06 1.70 8.14 -2.39 -0.02 1.68 16 36 H 0.08 1.49 8.14 -2.39 -0.02 1.47 16 37 H 0.07 1.48 8.14 -2.38 -0.02 1.46 16 38 H 0.42 8.76 8.59 -92.70 -0.80 7.97 16 39 H 0.20 1.15 8.06 -2.91 -0.02 1.13 16 40 H 0.18 0.48 8.06 -2.91 -0.02 0.46 16 41 H 0.20 1.33 8.06 -2.91 -0.02 1.31 16 42 H 0.11 4.25 7.72 -2.91 -0.02 4.23 16 43 H 0.14 3.41 8.06 -2.91 -0.02 3.38 16 44 H 0.15 3.03 8.06 -2.91 -0.02 3.00 16 45 H 0.14 3.40 8.06 -2.91 -0.02 3.37 16 46 H 0.11 3.92 7.91 -2.91 -0.02 3.90 16 Total: -1.00 -85.06 389.54 0.65 -84.42 By element: Atomic # 1 Polarization: 28.12 SS G_CDS: -0.65 Total: 27.47 kcal Atomic # 6 Polarization: -11.26 SS G_CDS: 7.76 Total: -3.50 kcal Atomic # 7 Polarization: -122.43 SS G_CDS: -8.24 Total: -130.68 kcal Atomic # 8 Polarization: -28.06 SS G_CDS: -0.05 Total: -28.10 kcal Atomic # 14 Polarization: 48.57 SS G_CDS: 1.83 Total: 50.39 kcal Total: -85.06 0.65 -84.42 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000619428085.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.490 kcal (2) G-P(sol) polarization free energy of solvation -85.064 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.426 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.648 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.415 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.075 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds