Wall clock time and date at job start Sat Apr 11 2020 06:04:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31258 * 1 3 3 Si 1.86812 * 119.99681 * 2 1 4 4 H 1.48502 * 109.46801 * 269.99810 * 3 2 1 5 5 H 1.48499 * 109.47024 * 29.99907 * 3 2 1 6 6 H 1.48496 * 109.46759 * 150.00064 * 3 2 1 7 7 C 1.39071 * 120.00309 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99859 * 199.42789 * 7 2 1 9 9 N 1.37101 * 119.99878 * 19.41989 * 7 2 1 10 10 C 1.36231 * 119.71621 * 221.06104 * 9 7 2 11 11 C 1.50699 * 118.34847 * 0.02562 * 10 9 7 12 12 N 1.46907 * 109.46834 * 179.72906 * 11 10 9 13 13 C 1.48520 * 110.99826 * 54.60589 * 12 11 10 14 14 C 1.54283 * 104.71212 * 159.27528 * 13 12 11 15 15 H 1.08999 * 112.83873 * 98.82115 * 14 13 12 16 16 C 1.54288 * 108.81809 * 224.26586 * 14 13 12 17 17 N 1.48515 * 104.71708 * 135.72996 * 16 14 13 18 18 C 1.48517 * 104.20215 * 320.27128 * 17 16 14 19 19 C 1.54288 * 104.71503 * 39.72833 * 18 17 16 20 20 H 1.09007 * 112.83590 * 98.81806 * 19 18 17 21 21 C 1.48521 * 110.99777 * 169.99829 * 12 11 10 22 22 N 1.29830 * 123.30305 * 179.72266 * 10 9 7 23 23 C 1.35636 * 121.61896 * 0.28059 * 22 10 9 24 24 C 1.39638 * 121.61627 * 180.02562 * 23 22 10 25 25 C 1.37704 * 119.69501 * 179.97438 * 24 23 22 26 26 C 1.38872 * 120.82566 * 0.02698 * 25 24 23 27 27 C 1.37792 * 120.57416 * 359.97438 * 26 25 24 28 28 C 1.39374 * 119.51728 * 0.02562 * 27 26 25 29 29 C 1.35345 * 119.71584 * 41.35236 * 9 7 2 30 30 O 1.21723 * 121.28657 * 359.95463 * 29 9 7 31 31 H 0.97005 * 120.00284 * 0.02562 * 1 2 3 32 32 H 1.08996 * 109.47514 * 59.73171 * 11 10 9 33 33 H 1.08999 * 109.46902 * 299.72866 * 11 10 9 34 34 H 1.08997 * 110.39221 * 40.46296 * 13 12 11 35 35 H 1.09003 * 110.38399 * 278.07859 * 13 12 11 36 36 H 1.09007 * 110.38458 * 16.91800 * 16 14 13 37 37 H 1.09000 * 110.38987 * 254.54475 * 16 14 13 38 38 H 1.00893 * 110.99898 * 79.81557 * 17 16 14 39 39 H 1.08999 * 110.38931 * 158.53758 * 18 17 16 40 40 H 1.08998 * 110.39243 * 280.92390 * 18 17 16 41 41 H 1.08993 * 110.39001 * 81.91190 * 21 12 11 42 42 H 1.09003 * 110.48284 * 319.58213 * 21 12 11 43 43 H 1.08008 * 120.14905 * 0.02562 * 24 23 22 44 44 H 1.08003 * 119.59174 * 179.97438 * 25 24 23 45 45 H 1.08004 * 119.71475 * 179.97438 * 26 25 24 46 46 H 1.08004 * 120.24631 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3126 0.0000 0.0000 3 14 2.2466 1.6179 0.0000 4 1 2.4940 2.0465 -1.4001 5 1 1.4439 2.6528 0.7000 6 1 3.5441 1.4403 0.7000 7 6 2.0080 -1.2044 0.0005 8 1 3.0419 -1.2308 0.3117 9 7 1.3810 -2.3581 -0.3937 10 6 1.5991 -3.5139 0.2936 11 6 2.5326 -3.4781 1.4760 12 7 2.6199 -4.8181 2.0718 13 6 3.0102 -5.8281 1.0553 14 6 3.5703 -7.0106 1.8729 15 1 2.8428 -7.8101 2.0132 16 6 4.8681 -7.5082 1.2032 17 7 5.8185 -7.7107 2.3262 18 6 5.5632 -6.5612 3.2313 19 6 4.0307 -6.3833 3.2162 20 1 3.5434 -6.8390 4.0783 21 6 3.7053 -4.8810 3.0836 22 7 1.0386 -4.6436 -0.0153 23 6 0.1873 -4.7512 -1.0657 24 6 -0.4158 -5.9661 -1.3977 25 6 -1.2745 -6.0303 -2.4723 26 6 -1.5489 -4.9009 -3.2324 27 6 -0.9662 -3.6907 -2.9250 28 6 -0.0941 -3.6040 -1.8413 29 6 0.5554 -2.3402 -1.4660 30 8 0.3547 -1.3160 -2.0923 31 1 -0.4851 0.8401 -0.0004 32 1 2.1532 -2.7749 2.2174 33 1 3.5226 -3.1612 1.1479 34 1 3.7783 -5.4253 0.3951 35 1 2.1400 -6.1430 0.4793 36 1 5.2510 -6.7571 0.5122 37 1 4.6900 -8.4489 0.6821 38 1 5.6426 -8.5863 2.7955 39 1 5.9093 -6.7877 4.2398 40 1 6.0533 -5.6640 2.8533 41 1 3.3594 -4.4817 4.0370 42 1 4.5811 -4.3318 2.7381 43 1 -0.2104 -6.8511 -0.8136 44 1 -1.7397 -6.9709 -2.7278 45 1 -2.2248 -4.9718 -4.0717 46 1 -1.1830 -2.8158 -3.5200 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000728913555.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:04:03 Heat of formation + Delta-G solvation = 53.154633 kcal Electronic energy + Delta-G solvation = -30371.732188 eV Core-core repulsion = 26454.843464 eV Total energy + Delta-G solvation = -3916.888724 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.65232 -39.88465 -37.64394 -36.79261 -35.35085 -33.80557 -31.96633 -31.05778 -30.45366 -30.36149 -28.68733 -26.16195 -25.79423 -25.64584 -23.05512 -22.40621 -21.87956 -21.09187 -20.38634 -19.32157 -18.79280 -17.81344 -16.99421 -16.87446 -15.78799 -15.19179 -15.13946 -15.04307 -14.79558 -14.50856 -14.26942 -13.91731 -13.75668 -13.57737 -13.17275 -13.09421 -12.95877 -12.32618 -12.30212 -12.06158 -11.95585 -11.90105 -11.64207 -11.36727 -11.22531 -11.19641 -11.02139 -10.99091 -10.92350 -10.71034 -10.57698 -10.54465 -10.46754 -9.53283 -8.95681 -8.85067 -8.65193 -8.39285 -8.37351 -8.01245 -7.06959 -6.71469 -4.56294 1.48039 1.64808 3.02684 3.10042 3.12540 3.19832 3.69595 3.89779 4.06659 4.14457 4.45215 4.55691 4.65565 4.68379 4.86567 5.06809 5.11726 5.17532 5.31026 5.32863 5.34494 5.40747 5.46223 5.54807 5.64786 5.72030 5.76848 5.81223 5.86451 5.89683 5.93885 5.99007 6.09071 6.16245 6.22030 6.30467 6.43371 6.53379 6.60955 6.78486 6.79307 7.00664 7.05369 7.11547 7.19158 7.27075 7.30709 7.49098 7.58279 8.08160 8.43148 8.68355 9.13377 9.47844 10.30265 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.009390 B = 0.004757 C = 0.003323 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2981.076608 B = 5884.982063 C = 8424.776919 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.798 5.798 2 C 0.080 3.920 3 Si 0.929 3.071 4 H -0.270 1.270 5 H -0.279 1.279 6 H -0.265 1.265 7 C -0.386 4.386 8 H 0.107 0.893 9 N -0.349 5.349 10 C 0.362 3.638 11 C 0.113 3.887 12 N -0.489 5.489 13 C 0.041 3.959 14 C -0.126 4.126 15 H 0.086 0.914 16 C 0.043 3.957 17 N -0.672 5.672 18 C 0.044 3.956 19 C -0.123 4.123 20 H 0.086 0.914 21 C 0.037 3.963 22 N -0.550 5.550 23 C 0.166 3.834 24 C -0.132 4.132 25 C -0.089 4.089 26 C -0.176 4.176 27 C -0.038 4.038 28 C -0.209 4.209 29 C 0.519 3.481 30 O -0.501 6.501 31 H 0.280 0.720 32 H 0.107 0.893 33 H 0.057 0.943 34 H 0.032 0.968 35 H 0.126 0.874 36 H 0.079 0.921 37 H 0.072 0.928 38 H 0.334 0.666 39 H 0.071 0.929 40 H 0.080 0.920 41 H 0.078 0.922 42 H 0.044 0.956 43 H 0.124 0.876 44 H 0.117 0.883 45 H 0.115 0.885 46 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.729 -11.869 4.286 13.859 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.425 5.425 2 C -0.138 4.138 3 Si 0.753 3.247 4 H -0.195 1.195 5 H -0.204 1.204 6 H -0.189 1.189 7 C -0.512 4.512 8 H 0.124 0.876 9 N -0.053 5.053 10 C 0.099 3.901 11 C -0.016 4.016 12 N -0.213 5.213 13 C -0.087 4.087 14 C -0.147 4.147 15 H 0.104 0.896 16 C -0.087 4.087 17 N -0.297 5.297 18 C -0.086 4.086 19 C -0.144 4.144 20 H 0.105 0.895 21 C -0.091 4.091 22 N -0.278 5.278 23 C 0.051 3.949 24 C -0.152 4.152 25 C -0.109 4.109 26 C -0.196 4.196 27 C -0.057 4.057 28 C -0.217 4.217 29 C 0.314 3.686 30 O -0.375 6.375 31 H 0.091 0.909 32 H 0.125 0.875 33 H 0.075 0.925 34 H 0.050 0.950 35 H 0.143 0.857 36 H 0.098 0.902 37 H 0.090 0.910 38 H 0.149 0.851 39 H 0.089 0.911 40 H 0.098 0.902 41 H 0.096 0.904 42 H 0.062 0.938 43 H 0.142 0.858 44 H 0.135 0.865 45 H 0.133 0.867 46 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 5.601 -11.569 4.122 13.499 hybrid contribution -0.178 1.626 -0.443 1.694 sum 5.423 -9.944 3.680 11.909 Atomic orbital electron populations 1.69811 1.07187 1.29550 1.35955 1.25405 0.94984 1.00464 0.92906 0.85928 0.79443 0.80208 0.79102 1.19488 1.20412 1.18915 1.19587 0.96830 0.84100 1.50709 0.87554 1.42231 1.34330 1.08403 1.20295 1.22627 0.93623 0.83204 0.90645 1.20973 0.96021 0.91693 0.92932 1.65357 1.40440 1.04119 1.11336 1.23567 1.00982 0.90506 0.93595 1.23342 0.97754 0.98812 0.94752 0.89559 1.23205 0.89670 1.01429 0.94400 1.63301 1.51581 1.04939 1.09899 1.23186 0.93464 0.95313 0.96682 1.23256 0.96485 0.96307 0.98339 0.89541 1.23220 0.93402 0.95076 0.97419 1.68525 1.17149 1.22391 1.19779 1.18852 0.92792 0.92577 0.90728 1.20574 0.99651 0.96205 0.98776 1.20967 0.97152 0.97892 0.94883 1.20831 1.03835 0.92930 1.01987 1.20885 0.92953 0.97409 0.94486 1.20825 1.04845 0.94481 1.01534 1.18216 0.81719 0.88201 0.80463 1.90667 1.60948 1.33565 1.52307 0.90902 0.87470 0.92546 0.95003 0.85671 0.90221 0.90984 0.85116 0.91051 0.90195 0.90395 0.93791 0.85802 0.86531 0.86650 0.85944 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -22.03 11.55 55.50 0.64 -21.38 16 2 C 0.08 2.04 4.37 -17.49 -0.08 1.97 16 3 Si 0.93 19.60 29.60 -169.99 -5.03 14.57 16 4 H -0.27 -5.90 7.11 56.52 0.40 -5.49 16 5 H -0.28 -5.76 7.11 56.52 0.40 -5.36 16 6 H -0.26 -5.21 7.11 56.52 0.40 -4.81 16 7 C -0.39 -9.65 8.23 -14.89 -0.12 -9.78 16 8 H 0.11 2.42 7.07 -52.48 -0.37 2.05 16 9 N -0.35 -8.78 2.68 -59.56 -0.16 -8.94 16 10 C 0.36 7.91 7.21 -154.87 -1.12 6.79 16 11 C 0.11 2.05 4.18 -4.97 -0.02 2.03 16 12 N -0.49 -7.72 5.28 -231.60 -1.22 -8.94 16 13 C 0.04 0.62 4.81 -2.26 -0.01 0.61 16 14 C -0.13 -1.48 4.12 -88.08 -0.36 -1.84 16 15 H 0.09 1.00 8.14 -51.93 -0.42 0.57 16 16 C 0.04 0.46 7.01 -2.26 -0.02 0.45 16 17 N -0.67 -6.79 7.62 -109.83 -0.84 -7.63 16 18 C 0.04 0.43 7.01 -2.25 -0.02 0.41 16 19 C -0.12 -1.33 4.12 -88.08 -0.36 -1.70 16 20 H 0.09 0.89 8.14 -51.93 -0.42 0.47 16 21 C 0.04 0.47 6.03 -2.26 -0.01 0.46 16 22 N -0.55 -11.52 6.35 -8.10 -0.05 -11.57 16 23 C 0.17 3.54 6.63 -84.49 -0.56 2.98 16 24 C -0.13 -2.32 10.03 -39.25 -0.39 -2.72 16 25 C -0.09 -1.40 10.00 -39.54 -0.40 -1.79 16 26 C -0.18 -2.96 10.02 -39.51 -0.40 -3.36 16 27 C -0.04 -0.78 9.68 -39.32 -0.38 -1.16 16 28 C -0.21 -4.88 5.89 -104.78 -0.62 -5.50 16 29 C 0.52 13.88 6.93 -12.47 -0.09 13.79 16 30 O -0.50 -14.68 14.29 5.17 0.07 -14.61 16 31 H 0.28 7.29 8.31 -40.82 -0.34 6.95 16 32 H 0.11 1.98 8.04 -51.93 -0.42 1.57 16 33 H 0.06 0.97 7.33 -51.93 -0.38 0.59 16 34 H 0.03 0.50 7.01 -51.93 -0.36 0.14 16 35 H 0.13 2.12 5.70 -51.93 -0.30 1.82 16 36 H 0.08 0.96 7.15 -51.93 -0.37 0.59 16 37 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 38 H 0.33 2.83 8.92 -39.30 -0.35 2.47 16 39 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 40 H 0.08 0.85 7.15 -51.93 -0.37 0.48 16 41 H 0.08 0.93 8.14 -51.93 -0.42 0.50 16 42 H 0.04 0.54 6.83 -51.93 -0.35 0.19 16 43 H 0.12 1.91 8.06 -52.48 -0.42 1.48 16 44 H 0.12 1.41 8.06 -52.48 -0.42 0.99 16 45 H 0.12 1.58 8.06 -52.48 -0.42 1.15 16 46 H 0.12 2.50 7.83 -52.48 -0.41 2.09 16 LS Contribution 361.18 15.07 5.44 5.44 Total: -1.00 -30.26 361.18 -12.30 -42.56 By element: Atomic # 1 Polarization: 15.08 SS G_CDS: -6.21 Total: 8.88 kcal Atomic # 6 Polarization: 6.57 SS G_CDS: -4.95 Total: 1.62 kcal Atomic # 7 Polarization: -56.83 SS G_CDS: -1.63 Total: -58.46 kcal Atomic # 8 Polarization: -14.68 SS G_CDS: 0.07 Total: -14.61 kcal Atomic # 14 Polarization: 19.60 SS G_CDS: -5.03 Total: 14.57 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -30.26 -12.30 -42.56 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000728913555.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.711 kcal (2) G-P(sol) polarization free energy of solvation -30.259 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.453 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.298 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.557 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.155 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds