Wall clock time and date at job start Sat Apr 11 2020 06:04:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31258 * 1 3 3 Si 1.86812 * 119.99681 * 2 1 4 4 H 1.48502 * 109.46801 * 269.99810 * 3 2 1 5 5 H 1.48499 * 109.47024 * 29.99907 * 3 2 1 6 6 H 1.48496 * 109.46759 * 150.00064 * 3 2 1 7 7 C 1.39071 * 120.00309 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99859 * 199.42789 * 7 2 1 9 9 N 1.37101 * 119.99878 * 19.41989 * 7 2 1 10 10 C 1.36231 * 119.71621 * 221.06104 * 9 7 2 11 11 C 1.50699 * 118.34847 * 0.02562 * 10 9 7 12 12 N 1.46907 * 109.46834 * 179.72906 * 11 10 9 13 13 C 1.48520 * 110.99826 * 54.60589 * 12 11 10 14 14 C 1.54283 * 104.71212 * 159.27528 * 13 12 11 15 15 H 1.08999 * 112.83873 * 98.82115 * 14 13 12 16 16 C 1.54288 * 108.81809 * 224.26586 * 14 13 12 17 17 N 1.48515 * 104.71708 * 135.72996 * 16 14 13 18 18 C 1.48517 * 104.20215 * 320.27128 * 17 16 14 19 19 C 1.54288 * 104.71503 * 39.72833 * 18 17 16 20 20 H 1.09007 * 112.83590 * 98.81806 * 19 18 17 21 21 C 1.48521 * 110.99777 * 169.99829 * 12 11 10 22 22 N 1.29830 * 123.30305 * 179.72266 * 10 9 7 23 23 C 1.35636 * 121.61896 * 0.28059 * 22 10 9 24 24 C 1.39638 * 121.61627 * 180.02562 * 23 22 10 25 25 C 1.37704 * 119.69501 * 179.97438 * 24 23 22 26 26 C 1.38872 * 120.82566 * 0.02698 * 25 24 23 27 27 C 1.37792 * 120.57416 * 359.97438 * 26 25 24 28 28 C 1.39374 * 119.51728 * 0.02562 * 27 26 25 29 29 C 1.35345 * 119.71584 * 41.35236 * 9 7 2 30 30 O 1.21723 * 121.28657 * 359.95463 * 29 9 7 31 31 H 0.97005 * 120.00284 * 0.02562 * 1 2 3 32 32 H 1.08996 * 109.47514 * 59.73171 * 11 10 9 33 33 H 1.08999 * 109.46902 * 299.72866 * 11 10 9 34 34 H 1.08997 * 110.39221 * 40.46296 * 13 12 11 35 35 H 1.09003 * 110.38399 * 278.07859 * 13 12 11 36 36 H 1.09007 * 110.38458 * 16.91800 * 16 14 13 37 37 H 1.09000 * 110.38987 * 254.54475 * 16 14 13 38 38 H 1.00893 * 110.99898 * 79.81557 * 17 16 14 39 39 H 1.08999 * 110.38931 * 158.53758 * 18 17 16 40 40 H 1.08998 * 110.39243 * 280.92390 * 18 17 16 41 41 H 1.08993 * 110.39001 * 81.91190 * 21 12 11 42 42 H 1.09003 * 110.48284 * 319.58213 * 21 12 11 43 43 H 1.08008 * 120.14905 * 0.02562 * 24 23 22 44 44 H 1.08003 * 119.59174 * 179.97438 * 25 24 23 45 45 H 1.08004 * 119.71475 * 179.97438 * 26 25 24 46 46 H 1.08004 * 120.24631 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3126 0.0000 0.0000 3 14 2.2466 1.6179 0.0000 4 1 2.4940 2.0465 -1.4001 5 1 1.4439 2.6528 0.7000 6 1 3.5441 1.4403 0.7000 7 6 2.0080 -1.2044 0.0005 8 1 3.0419 -1.2308 0.3117 9 7 1.3810 -2.3581 -0.3937 10 6 1.5991 -3.5139 0.2936 11 6 2.5326 -3.4781 1.4760 12 7 2.6199 -4.8181 2.0718 13 6 3.0102 -5.8281 1.0553 14 6 3.5703 -7.0106 1.8729 15 1 2.8428 -7.8101 2.0132 16 6 4.8681 -7.5082 1.2032 17 7 5.8185 -7.7107 2.3262 18 6 5.5632 -6.5612 3.2313 19 6 4.0307 -6.3833 3.2162 20 1 3.5434 -6.8390 4.0783 21 6 3.7053 -4.8810 3.0836 22 7 1.0386 -4.6436 -0.0153 23 6 0.1873 -4.7512 -1.0657 24 6 -0.4158 -5.9661 -1.3977 25 6 -1.2745 -6.0303 -2.4723 26 6 -1.5489 -4.9009 -3.2324 27 6 -0.9662 -3.6907 -2.9250 28 6 -0.0941 -3.6040 -1.8413 29 6 0.5554 -2.3402 -1.4660 30 8 0.3547 -1.3160 -2.0923 31 1 -0.4851 0.8401 -0.0004 32 1 2.1532 -2.7749 2.2174 33 1 3.5226 -3.1612 1.1479 34 1 3.7783 -5.4253 0.3951 35 1 2.1400 -6.1430 0.4793 36 1 5.2510 -6.7571 0.5122 37 1 4.6900 -8.4489 0.6821 38 1 5.6426 -8.5863 2.7955 39 1 5.9093 -6.7877 4.2398 40 1 6.0533 -5.6640 2.8533 41 1 3.3594 -4.4817 4.0370 42 1 4.5811 -4.3318 2.7381 43 1 -0.2104 -6.8511 -0.8136 44 1 -1.7397 -6.9709 -2.7278 45 1 -2.2248 -4.9718 -4.0717 46 1 -1.1830 -2.8158 -3.5200 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000728913555.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:04:02 Heat of formation + Delta-G solvation = 32.303596 kcal Electronic energy + Delta-G solvation = -30372.636357 eV Core-core repulsion = 26454.843464 eV Total energy + Delta-G solvation = -3917.792893 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -42.31141 -40.96940 -39.24063 -38.41506 -36.66775 -35.55494 -33.77252 -32.34944 -31.89911 -31.42021 -30.10342 -27.73992 -27.40345 -26.64087 -24.74291 -23.77490 -22.85080 -22.59901 -21.75571 -20.54784 -20.32159 -19.46607 -18.50490 -17.87913 -17.55084 -16.79919 -16.50542 -16.31383 -16.08967 -15.94488 -15.64028 -15.47149 -15.31733 -14.90376 -14.67382 -14.39485 -14.18137 -13.96299 -13.69808 -13.52438 -13.39174 -13.05085 -12.92630 -12.87612 -12.79998 -12.60974 -12.49291 -12.23397 -12.14167 -11.99009 -11.74008 -11.72975 -11.49717 -11.27517 -10.81852 -10.35481 -10.22001 -9.92339 -9.64916 -9.26234 -8.80831 -8.55461 -6.51364 -0.12201 0.07555 1.31353 1.39587 1.47352 1.50013 1.98415 2.24288 2.43657 2.85908 3.12249 3.22429 3.34345 3.36666 3.61522 3.73930 3.79750 3.94122 4.14564 4.17927 4.21134 4.24626 4.31954 4.44216 4.46554 4.49830 4.52269 4.59231 4.65518 4.72091 4.83618 4.93047 4.96320 5.01989 5.07594 5.12140 5.16047 5.19557 5.35082 5.37803 5.46634 5.55454 5.60660 5.72700 5.76237 5.96687 6.02715 6.07511 6.28818 6.51286 6.58728 6.81963 7.35882 7.60403 8.43669 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.009390 B = 0.004757 C = 0.003323 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2981.076608 B = 5884.982063 C = 8424.776919 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.849 5.849 2 C 0.032 3.968 3 Si 0.993 3.007 4 H -0.285 1.285 5 H -0.273 1.273 6 H -0.237 1.237 7 C -0.403 4.403 8 H 0.121 0.879 9 N -0.368 5.368 10 C 0.350 3.650 11 C 0.124 3.876 12 N -0.499 5.499 13 C 0.045 3.955 14 C -0.118 4.118 15 H 0.094 0.906 16 C 0.048 3.952 17 N -0.675 5.675 18 C 0.048 3.952 19 C -0.114 4.114 20 H 0.100 0.900 21 C 0.035 3.965 22 N -0.531 5.531 23 C 0.135 3.865 24 C -0.124 4.124 25 C -0.071 4.071 26 C -0.150 4.150 27 C -0.068 4.068 28 C -0.238 4.238 29 C 0.494 3.506 30 O -0.553 6.553 31 H 0.276 0.724 32 H 0.099 0.901 33 H 0.062 0.938 34 H 0.017 0.983 35 H 0.105 0.895 36 H 0.062 0.938 37 H 0.086 0.914 38 H 0.347 0.653 39 H 0.093 0.907 40 H 0.069 0.931 41 H 0.086 0.914 42 H 0.046 0.954 43 H 0.153 0.847 44 H 0.173 0.827 45 H 0.157 0.843 46 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.194 -15.533 5.070 17.474 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.479 5.479 2 C -0.180 4.180 3 Si 0.814 3.186 4 H -0.211 1.211 5 H -0.198 1.198 6 H -0.159 1.159 7 C -0.530 4.530 8 H 0.138 0.862 9 N -0.073 5.073 10 C 0.086 3.914 11 C -0.006 4.006 12 N -0.223 5.223 13 C -0.083 4.083 14 C -0.139 4.139 15 H 0.113 0.887 16 C -0.082 4.082 17 N -0.302 5.302 18 C -0.082 4.082 19 C -0.135 4.135 20 H 0.118 0.882 21 C -0.092 4.092 22 N -0.257 5.257 23 C 0.021 3.979 24 C -0.144 4.144 25 C -0.090 4.090 26 C -0.168 4.168 27 C -0.088 4.088 28 C -0.245 4.245 29 C 0.290 3.710 30 O -0.431 6.431 31 H 0.086 0.914 32 H 0.117 0.883 33 H 0.079 0.921 34 H 0.035 0.965 35 H 0.123 0.877 36 H 0.080 0.920 37 H 0.105 0.895 38 H 0.163 0.837 39 H 0.111 0.889 40 H 0.087 0.913 41 H 0.104 0.896 42 H 0.064 0.936 43 H 0.170 0.830 44 H 0.190 0.810 45 H 0.175 0.825 46 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges 6.086 -15.324 4.943 17.213 hybrid contribution -0.433 2.433 -0.778 2.591 sum 5.653 -12.891 4.165 14.679 Atomic orbital electron populations 1.69930 1.09048 1.29832 1.39047 1.26406 0.95547 1.03920 0.92102 0.84978 0.79377 0.75948 0.78294 1.21110 1.19798 1.15926 1.19975 0.97514 0.84626 1.50844 0.86174 1.42334 1.34930 1.09320 1.20703 1.23356 0.94035 0.82455 0.91539 1.20877 0.95196 0.93181 0.91376 1.65360 1.42333 1.02774 1.11865 1.23430 0.99734 0.91482 0.93672 1.23295 0.98243 0.97604 0.94771 0.88721 1.23097 0.89091 1.01545 0.94475 1.63253 1.51262 1.05713 1.09930 1.23153 0.92411 0.94923 0.97705 1.23252 0.97415 0.94616 0.98210 0.88180 1.23331 0.92479 0.96790 0.96643 1.68672 1.16141 1.21653 1.19255 1.19358 0.93975 0.93577 0.91006 1.21012 0.98676 0.95361 0.99329 1.21580 0.95184 0.99503 0.92764 1.21352 1.01924 0.91359 1.02173 1.21011 0.94192 0.99051 0.94518 1.20985 1.06277 0.93883 1.03389 1.18901 0.82381 0.89022 0.80671 1.90589 1.63138 1.35280 1.54087 0.91435 0.88294 0.92067 0.96465 0.87703 0.91989 0.89546 0.83685 0.88895 0.91259 0.89551 0.93602 0.82975 0.80999 0.82516 0.87338 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -50.19 11.55 21.68 0.25 -49.94 16 2 C 0.03 1.72 4.37 84.98 0.37 2.09 16 3 Si 0.99 42.00 29.60 68.60 2.03 44.03 16 4 H -0.28 -12.63 7.11 99.48 0.71 -11.92 16 5 H -0.27 -11.12 7.11 99.48 0.71 -10.41 16 6 H -0.24 -8.79 7.11 99.48 0.71 -8.09 16 7 C -0.40 -21.33 8.23 84.07 0.69 -20.64 16 8 H 0.12 5.71 7.07 -2.91 -0.02 5.69 16 9 N -0.37 -19.66 2.68 -460.25 -1.23 -20.90 16 10 C 0.35 15.93 7.21 137.94 0.99 16.92 16 11 C 0.12 4.60 4.18 85.56 0.36 4.95 16 12 N -0.50 -15.58 5.28 -886.66 -4.68 -20.27 16 13 C 0.04 1.31 4.81 86.43 0.42 1.73 16 14 C -0.12 -2.53 4.12 -9.15 -0.04 -2.57 16 15 H 0.09 1.91 8.14 -2.39 -0.02 1.89 16 16 C 0.05 0.94 7.01 86.43 0.61 1.54 16 17 N -0.68 -11.79 7.62 -501.40 -3.82 -15.61 16 18 C 0.05 0.81 7.01 86.43 0.61 1.42 16 19 C -0.11 -2.18 4.12 -9.15 -0.04 -2.22 16 20 H 0.10 1.70 8.14 -2.38 -0.02 1.68 16 21 C 0.04 0.84 6.03 86.42 0.52 1.36 16 22 N -0.53 -22.57 6.35 -179.53 -1.14 -23.71 16 23 C 0.14 5.76 6.63 39.65 0.26 6.02 16 24 C -0.12 -3.99 10.03 22.48 0.23 -3.77 16 25 C -0.07 -1.88 10.00 22.30 0.22 -1.65 16 26 C -0.15 -4.53 10.02 22.32 0.22 -4.30 16 27 C -0.07 -2.83 9.68 22.44 0.22 -2.62 16 28 C -0.24 -11.58 5.89 -19.96 -0.12 -11.70 16 29 C 0.49 28.26 6.93 86.44 0.60 28.86 16 30 O -0.55 -35.09 14.29 -4.42 -0.06 -35.15 16 31 H 0.28 15.46 8.31 -92.70 -0.77 14.69 16 32 H 0.10 3.82 8.04 -2.39 -0.02 3.80 16 33 H 0.06 2.19 7.33 -2.39 -0.02 2.17 16 34 H 0.02 0.55 7.01 -2.39 -0.02 0.53 16 35 H 0.11 3.49 5.70 -2.39 -0.01 3.48 16 36 H 0.06 1.44 7.15 -2.38 -0.02 1.43 16 37 H 0.09 1.43 8.14 -2.39 -0.02 1.41 16 38 H 0.35 4.68 8.92 -89.70 -0.80 3.88 16 39 H 0.09 1.20 8.14 -2.39 -0.02 1.18 16 40 H 0.07 1.34 7.15 -2.39 -0.02 1.32 16 41 H 0.09 1.91 8.14 -2.39 -0.02 1.89 16 42 H 0.05 1.09 6.83 -2.39 -0.02 1.07 16 43 H 0.15 4.03 8.06 -2.91 -0.02 4.01 16 44 H 0.17 2.81 8.06 -2.91 -0.02 2.79 16 45 H 0.16 3.49 8.06 -2.91 -0.02 3.47 16 46 H 0.11 4.71 7.83 -2.91 -0.02 4.69 16 Total: -1.00 -73.16 361.18 -2.32 -75.47 By element: Atomic # 1 Polarization: 30.42 SS G_CDS: 0.22 Total: 30.65 kcal Atomic # 6 Polarization: 9.30 SS G_CDS: 6.12 Total: 15.42 kcal Atomic # 7 Polarization: -119.79 SS G_CDS: -10.63 Total: -130.42 kcal Atomic # 8 Polarization: -35.09 SS G_CDS: -0.06 Total: -35.15 kcal Atomic # 14 Polarization: 42.00 SS G_CDS: 2.03 Total: 44.03 kcal Total: -73.16 -2.32 -75.47 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000728913555.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.776 kcal (2) G-P(sol) polarization free energy of solvation -73.157 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.619 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.315 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.472 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.304 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds