Wall clock time and date at job start Sat Apr 11 2020 06:04:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30825 * 1 3 3 Si 1.86806 * 120.00088 * 2 1 4 4 H 1.48495 * 109.47135 * 270.00310 * 3 2 1 5 5 H 1.48501 * 109.47037 * 30.00203 * 3 2 1 6 6 H 1.48499 * 109.46911 * 150.00387 * 3 2 1 7 7 C 1.39946 * 119.99899 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99753 * 163.64866 * 7 2 1 9 9 C 1.41399 * 119.99974 * 343.65347 * 7 2 1 10 10 C 1.40728 * 120.24100 * 334.03345 * 9 7 2 11 11 C 1.37600 * 119.74470 * 180.02562 * 10 9 7 12 12 C 1.38658 * 120.24675 * 0.02562 * 11 10 9 13 13 C 1.38619 * 120.50025 * 359.72528 * 12 11 10 14 14 C 1.37637 * 120.24666 * 0.55546 * 13 12 11 15 15 C 1.50701 * 120.12679 * 179.72348 * 14 13 12 16 16 C 1.50701 * 109.47001 * 264.72458 * 15 14 13 17 17 O 1.21285 * 119.99710 * 0.02562 * 16 15 14 18 18 N 1.34770 * 120.00158 * 179.97438 * 16 15 14 19 19 C 1.46919 * 120.63260 * 180.02562 * 18 16 15 20 20 C 1.53200 * 108.77707 * 233.58979 * 19 18 16 21 21 C 1.53042 * 109.33822 * 305.34674 * 20 19 18 22 22 C 1.50700 * 109.45942 * 181.39944 * 21 20 19 23 23 N 1.33237 * 125.52442 * 120.00114 * 22 21 20 24 24 C 1.30832 * 109.82616 * 179.97438 * 23 22 21 25 25 N 1.34422 * 108.07824 * 0.02562 * 24 23 22 26 26 H 0.97010 * 126.82338 * 179.97438 * 25 24 23 27 27 N 1.30713 * 125.52454 * 299.69536 * 22 21 20 28 28 C 1.53118 * 109.49866 * 61.34784 * 21 20 19 29 29 C 1.46928 * 120.62908 * 359.97438 * 18 16 15 30 30 H 0.97005 * 119.99592 * 359.97438 * 1 2 3 31 31 H 1.07998 * 120.13131 * 0.04849 * 10 9 7 32 32 H 1.07996 * 119.87570 * 179.97438 * 11 10 9 33 33 H 1.07998 * 119.74866 * 179.97438 * 12 11 10 34 34 H 1.07998 * 119.87557 * 180.30713 * 13 12 11 35 35 H 1.09002 * 109.46992 * 144.72786 * 15 14 13 36 36 H 1.09000 * 109.47099 * 24.72639 * 15 14 13 37 37 H 1.09001 * 109.58792 * 113.80651 * 19 18 16 38 38 H 1.08999 * 109.70245 * 353.44557 * 19 18 16 39 39 H 1.08998 * 109.49296 * 65.31451 * 20 19 18 40 40 H 1.08999 * 109.49867 * 185.38494 * 20 19 18 41 41 H 1.09000 * 109.46090 * 301.36605 * 21 20 19 42 42 H 1.08007 * 125.95790 * 179.97438 * 24 23 22 43 43 H 1.09003 * 109.48233 * 178.69681 * 28 21 20 44 44 H 1.08991 * 109.51550 * 58.63040 * 28 21 20 45 45 H 1.08995 * 109.58946 * 246.19592 * 29 18 16 46 46 H 1.08999 * 109.58712 * 6.62381 * 29 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2423 1.6178 0.0000 4 1 2.4897 2.0465 -1.4000 5 1 1.4398 2.6527 0.7001 6 1 3.5399 1.4401 0.7000 7 6 2.0080 -1.2120 -0.0005 8 1 3.0552 -1.2307 -0.2639 9 6 1.3438 -2.4119 0.3436 10 6 0.2132 -2.3812 1.1810 11 6 -0.4250 -3.5551 1.5097 12 6 0.0424 -4.7651 1.0197 13 6 1.1520 -4.8067 0.1899 14 6 1.8094 -3.6455 -0.1474 15 6 3.0193 -3.6945 -1.0446 16 6 4.2685 -3.7243 -0.2022 17 8 4.1845 -3.7079 1.0077 18 7 5.4789 -3.7702 -0.7931 19 6 6.7057 -3.8003 0.0147 20 6 7.6279 -2.6675 -0.4469 21 6 7.8653 -2.7894 -1.9539 22 6 8.7998 -1.6966 -2.4050 23 7 9.9853 -1.8818 -2.9844 24 6 10.5358 -0.7247 -3.2484 25 7 9.6968 0.2405 -2.8343 26 1 9.8361 1.1985 -2.8978 27 7 8.5763 -0.4133 -2.2964 28 6 6.5311 -2.6589 -2.6937 29 6 5.5965 -3.7923 -2.2575 30 1 -0.4850 0.8401 0.0004 31 1 -0.1525 -1.4399 1.5638 32 1 -1.2925 -3.5340 2.1525 33 1 -0.4644 -5.6816 1.2832 34 1 1.5044 -5.7542 -0.1900 35 1 3.0333 -2.8119 -1.6841 36 1 2.9767 -4.5909 -1.6633 37 1 7.2082 -4.7582 -0.1196 38 1 6.4563 -3.6627 1.0668 39 1 7.1614 -1.7068 -0.2287 40 1 8.5806 -2.7371 0.0782 41 1 8.3090 -3.7604 -2.1742 42 1 11.4970 -0.5718 -3.7165 43 1 6.7034 -2.7226 -3.7681 44 1 6.0748 -1.6984 -2.4548 45 1 6.0088 -4.7495 -2.5766 46 1 4.6133 -3.6481 -2.7053 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000777409498.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:04:15 Heat of formation + Delta-G solvation = 63.659735 kcal Electronic energy + Delta-G solvation = -29363.682905 eV Core-core repulsion = 25447.249716 eV Total energy + Delta-G solvation = -3916.433189 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -42.37096 -39.77267 -37.78014 -36.78169 -33.81236 -33.55436 -32.34969 -31.89933 -30.82067 -30.67948 -29.37906 -27.04083 -25.59219 -24.83349 -23.22446 -23.09969 -21.54840 -20.86439 -20.29536 -19.58094 -18.63068 -18.38330 -17.08256 -16.61166 -15.74582 -15.52155 -15.31008 -15.26431 -14.86186 -14.64661 -14.40354 -13.96810 -13.89593 -13.50770 -13.34402 -12.85911 -12.58238 -12.48100 -12.35627 -12.34103 -11.63932 -11.53913 -11.49184 -11.22391 -11.09800 -10.99827 -10.94549 -10.85726 -10.69272 -10.62182 -10.33949 -10.29179 -10.25748 -9.82035 -9.41400 -9.29484 -9.09592 -9.03384 -8.29021 -7.24358 -7.21678 -6.67613 -4.27229 1.37283 2.41915 2.64954 2.84126 3.02140 3.10415 3.17306 3.32767 3.37347 3.47914 3.81259 3.99451 4.39716 4.59440 4.71967 4.78342 4.82623 5.09689 5.17229 5.32710 5.33478 5.53449 5.60381 5.70896 5.79356 5.82426 5.84707 5.98476 6.01366 6.09437 6.11699 6.15834 6.24810 6.34545 6.36308 6.49631 6.57648 6.75208 6.84350 6.92122 7.15444 7.36419 7.49182 7.70428 7.83765 7.87087 8.00382 8.14625 8.19888 8.38599 8.71860 8.91007 8.98876 9.08631 10.26632 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.012069 B = 0.003506 C = 0.002874 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2319.487522 B = 7984.360449 C = 9741.336429 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.796 5.796 2 C 0.078 3.922 3 Si 0.899 3.101 4 H -0.270 1.270 5 H -0.276 1.276 6 H -0.261 1.261 7 C -0.455 4.455 8 H 0.074 0.926 9 C 0.129 3.871 10 C -0.160 4.160 11 C -0.107 4.107 12 C -0.240 4.240 13 C -0.081 4.081 14 C -0.180 4.180 15 C -0.070 4.070 16 C 0.519 3.481 17 O -0.520 6.520 18 N -0.626 5.626 19 C 0.116 3.884 20 C -0.124 4.124 21 C 0.009 3.991 22 C 0.236 3.764 23 N -0.543 5.543 24 C 0.256 3.744 25 N -0.487 5.487 26 H 0.441 0.559 27 N -0.303 5.303 28 C -0.127 4.127 29 C 0.113 3.887 30 H 0.279 0.721 31 H 0.116 0.884 32 H 0.085 0.915 33 H 0.085 0.915 34 H 0.084 0.916 35 H 0.096 0.904 36 H 0.075 0.925 37 H 0.062 0.938 38 H 0.095 0.905 39 H 0.076 0.924 40 H 0.072 0.928 41 H 0.099 0.901 42 H 0.221 0.779 43 H 0.074 0.926 44 H 0.079 0.921 45 H 0.067 0.933 46 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.544 -0.692 -9.041 20.642 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.422 5.422 2 C -0.139 4.139 3 Si 0.723 3.277 4 H -0.196 1.196 5 H -0.201 1.201 6 H -0.185 1.185 7 C -0.485 4.485 8 H 0.092 0.908 9 C 0.127 3.873 10 C -0.179 4.179 11 C -0.126 4.126 12 C -0.259 4.259 13 C -0.100 4.100 14 C -0.182 4.182 15 C -0.109 4.109 16 C 0.309 3.691 17 O -0.394 6.394 18 N -0.363 5.363 19 C -0.007 4.007 20 C -0.164 4.164 21 C -0.013 4.013 22 C -0.047 4.047 23 N -0.271 5.271 24 C -0.043 4.043 25 N -0.205 5.205 26 H 0.286 0.714 27 N -0.132 5.132 28 C -0.166 4.166 29 C -0.011 4.011 30 H 0.089 0.911 31 H 0.134 0.866 32 H 0.104 0.896 33 H 0.103 0.897 34 H 0.102 0.898 35 H 0.114 0.886 36 H 0.093 0.907 37 H 0.081 0.919 38 H 0.113 0.887 39 H 0.095 0.905 40 H 0.090 0.910 41 H 0.117 0.883 42 H 0.237 0.763 43 H 0.093 0.907 44 H 0.097 0.903 45 H 0.085 0.915 46 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 17.760 -0.578 -8.129 19.541 hybrid contribution 0.922 1.698 -0.336 1.961 sum 18.682 1.120 -8.465 20.541 Atomic orbital electron populations 1.69826 1.07435 1.28947 1.35981 1.25850 0.94643 1.01013 0.92365 0.86460 0.80910 0.81159 0.79138 1.19578 1.20127 1.18490 1.19462 0.97170 0.90938 1.40888 0.90801 1.17328 0.90742 0.91266 0.87982 1.21285 0.99060 0.96644 1.00910 1.20667 0.98636 0.93482 0.99802 1.20301 1.01686 0.96127 1.07826 1.20296 0.95943 0.95529 0.98197 1.19070 0.99193 0.94046 1.05905 1.20294 0.90603 1.02544 0.97474 1.21234 0.84107 0.74533 0.89225 1.90667 1.86239 1.47707 1.14767 1.48247 1.05890 1.75935 1.06251 1.21427 0.84712 0.97115 0.97488 1.21964 1.00035 1.00864 0.93493 1.19591 0.92023 0.93872 0.95774 1.24310 0.92461 0.91856 0.96037 1.70440 1.09358 1.26317 1.20981 1.26087 0.97772 0.83805 0.96643 1.48206 1.14449 1.10775 1.47074 0.71356 1.78126 1.05995 1.07620 1.21432 1.22007 0.94033 1.00802 0.99786 1.21663 1.00932 0.97814 0.80665 0.91052 0.86593 0.89645 0.89710 0.89779 0.88617 0.90666 0.91925 0.88708 0.90517 0.90971 0.88328 0.76272 0.90697 0.90269 0.91461 0.88809 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -20.92 10.97 55.55 0.61 -20.31 16 2 C 0.08 2.01 5.16 -17.34 -0.09 1.92 16 3 Si 0.90 19.45 29.59 -169.99 -5.03 14.42 16 4 H -0.27 -5.69 7.11 56.52 0.40 -5.29 16 5 H -0.28 -5.83 7.11 56.52 0.40 -5.42 16 6 H -0.26 -5.77 7.11 56.52 0.40 -5.37 16 7 C -0.45 -12.22 8.14 -37.74 -0.31 -12.53 16 8 H 0.07 1.95 6.67 -52.49 -0.35 1.60 16 9 C 0.13 3.52 5.56 -106.83 -0.59 2.93 16 10 C -0.16 -4.36 8.68 -38.87 -0.34 -4.69 16 11 C -0.11 -2.68 10.02 -39.66 -0.40 -3.07 16 12 C -0.24 -5.71 10.05 -39.29 -0.39 -6.10 16 13 C -0.08 -1.92 9.66 -39.66 -0.38 -2.30 16 14 C -0.18 -4.42 4.43 -103.91 -0.46 -4.88 16 15 C -0.07 -1.39 3.53 -29.03 -0.10 -1.49 16 16 C 0.52 10.42 7.33 -10.99 -0.08 10.34 16 17 O -0.52 -12.73 15.45 5.55 0.09 -12.64 16 18 N -0.63 -9.64 2.97 -172.74 -0.51 -10.16 16 19 C 0.12 1.58 6.43 -3.71 -0.02 1.56 16 20 C -0.12 -1.55 5.34 -26.61 -0.14 -1.69 16 21 C 0.01 0.10 2.62 -91.69 -0.24 -0.14 16 22 C 0.24 2.89 6.65 -156.86 -1.04 1.85 16 23 N -0.54 -6.05 11.19 -11.98 -0.13 -6.18 16 24 C 0.26 1.86 13.13 -90.66 -1.19 0.67 16 25 N -0.49 -3.97 7.45 29.53 0.22 -3.75 16 26 H 0.44 1.99 8.96 -182.33 -1.63 0.35 16 27 N -0.30 -3.85 12.80 32.42 0.41 -3.43 16 28 C -0.13 -1.46 5.35 -26.54 -0.14 -1.60 16 29 C 0.11 1.33 6.34 -3.68 -0.02 1.30 16 30 H 0.28 6.69 8.30 -40.82 -0.34 6.35 16 31 H 0.12 3.25 6.22 -52.49 -0.33 2.92 16 32 H 0.09 1.90 8.06 -52.49 -0.42 1.48 16 33 H 0.08 1.79 8.06 -52.49 -0.42 1.36 16 34 H 0.08 1.74 8.06 -52.49 -0.42 1.31 16 35 H 0.10 1.89 6.61 -51.93 -0.34 1.55 16 36 H 0.08 1.26 7.85 -51.93 -0.41 0.85 16 37 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16 38 H 0.09 1.51 7.01 -51.93 -0.36 1.14 16 39 H 0.08 1.14 8.14 -51.93 -0.42 0.72 16 40 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 41 H 0.10 1.01 8.14 -51.93 -0.42 0.59 16 42 H 0.22 0.42 8.06 -52.48 -0.42 -0.01 16 43 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 44 H 0.08 1.09 8.14 -51.93 -0.42 0.67 16 45 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 46 H 0.09 1.08 5.93 -51.93 -0.31 0.78 16 LS Contribution 376.95 15.07 5.68 5.68 Total: -1.00 -35.34 376.95 -12.14 -47.48 By element: Atomic # 1 Polarization: 14.34 SS G_CDS: -7.52 Total: 6.82 kcal Atomic # 6 Polarization: -11.98 SS G_CDS: -5.95 Total: -17.93 kcal Atomic # 7 Polarization: -44.42 SS G_CDS: 0.60 Total: -43.82 kcal Atomic # 8 Polarization: -12.73 SS G_CDS: 0.09 Total: -12.64 kcal Atomic # 14 Polarization: 19.45 SS G_CDS: -5.03 Total: 14.42 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -35.34 -12.14 -47.48 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000777409498.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.135 kcal (2) G-P(sol) polarization free energy of solvation -35.337 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 75.799 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.139 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.475 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.660 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds