Wall clock time and date at job start Sat Apr 11 2020 06:04:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86807 * 120.00330 * 2 1 4 4 H 1.48495 * 109.47330 * 239.99927 * 3 2 1 5 5 H 1.48506 * 109.46833 * 359.97438 * 3 2 1 6 6 H 1.48492 * 109.46993 * 119.99429 * 3 2 1 7 7 C 1.37878 * 120.00278 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00524 * 179.97438 * 7 2 1 9 9 C 1.50704 * 119.99461 * 0.02562 * 7 2 1 10 10 N 1.46504 * 109.47049 * 180.02562 * 9 7 2 11 11 C 1.34736 * 125.27117 * 124.99969 * 10 9 7 12 12 C 1.36682 * 108.04986 * 179.97438 * 11 10 9 13 13 C 1.47533 * 126.67944 * 180.02562 * 12 11 10 14 14 N 1.29698 * 120.00575 * 185.52405 * 13 12 11 15 15 N 1.40098 * 120.00507 * 180.02562 * 14 13 12 16 16 C 1.46500 * 120.00408 * 180.02562 * 15 14 13 17 17 H 1.08993 * 110.45672 * 330.70085 * 16 15 14 18 18 C 1.54510 * 110.51300 * 208.09453 * 16 15 14 19 19 C 1.54476 * 104.06144 * 241.35781 * 18 16 15 20 20 O 1.44421 * 104.80748 * 23.97705 * 19 18 16 21 21 C 1.44784 * 105.29569 * 319.45381 * 20 19 18 22 22 C 1.46440 * 106.64942 * 0.02562 * 12 11 10 23 23 C 1.48271 * 126.47942 * 179.97438 * 22 12 11 24 24 C 1.39397 * 120.12309 * 224.71780 * 23 22 12 25 25 C 1.38004 * 119.86969 * 179.72383 * 24 23 22 26 26 C 1.38328 * 120.12593 * 0.55843 * 25 24 23 27 27 C 1.38330 * 120.25671 * 359.71707 * 26 25 24 28 28 C 1.38006 * 120.12646 * 0.02562 * 27 26 25 29 29 N 1.31555 * 107.03085 * 359.74594 * 22 12 11 30 30 H 0.96997 * 120.00069 * 179.97438 * 1 2 3 31 31 H 1.08994 * 109.47550 * 300.00098 * 9 7 2 32 32 H 1.08999 * 109.47358 * 60.00691 * 9 7 2 33 33 H 1.07999 * 125.97858 * 359.94766 * 11 10 9 34 34 H 1.08000 * 119.99526 * 5.52909 * 13 12 11 35 35 H 0.97004 * 119.99819 * 0.02562 * 15 14 13 36 36 H 1.09001 * 110.51235 * 0.02562 * 18 16 15 37 37 H 1.08996 * 110.51130 * 122.57112 * 18 16 15 38 38 H 1.09001 * 110.37163 * 142.81133 * 19 18 16 39 39 H 1.09005 * 110.37074 * 265.02850 * 19 18 16 40 40 H 1.09002 * 110.42970 * 281.78347 * 21 20 19 41 41 H 1.08997 * 110.48851 * 159.32312 * 21 20 19 42 42 H 1.08006 * 120.06169 * 0.02562 * 24 23 22 43 43 H 1.07995 * 119.93424 * 180.27160 * 25 24 23 44 44 H 1.08001 * 119.87157 * 179.69601 * 26 25 24 45 45 H 1.08001 * 119.93705 * 180.02562 * 27 26 25 46 46 H 1.08004 * 120.06524 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6964 -1.2124 5 1 1.2842 2.7465 -0.0006 6 1 3.1028 1.6964 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4991 0.0005 10 7 2.2030 -3.6127 0.0018 11 6 2.2283 -4.6137 0.9033 12 6 3.2529 -5.4557 0.5727 13 6 3.6476 -6.6858 1.2852 14 7 4.7106 -7.3335 0.9211 15 7 5.0851 -8.5019 1.5973 16 6 6.2862 -9.2332 1.1865 17 1 6.4712 -9.0940 0.1214 18 6 6.1460 -10.7354 1.5198 19 6 7.2992 -11.0092 2.5106 20 8 7.5902 -9.7244 3.1024 21 6 7.5083 -8.7745 2.0127 22 6 3.8829 -4.8992 -0.6264 23 6 5.0420 -5.4659 -1.3571 24 6 6.0798 -4.6346 -1.7752 25 6 7.1589 -5.1685 -2.4498 26 6 7.2062 -6.5241 -2.7214 27 6 6.1765 -7.3530 -2.3139 28 6 5.0949 -6.8310 -1.6339 29 7 3.2228 -3.8040 -0.9356 30 1 -0.4850 -0.8400 -0.0004 31 1 0.6240 -2.5567 0.8902 32 1 0.6247 -2.5571 -0.8897 33 1 1.5567 -4.7302 1.7410 34 1 3.0511 -7.0470 2.1099 35 1 4.5490 -8.8268 2.3377 36 1 5.1828 -10.9341 1.9899 37 1 6.2617 -11.3388 0.6195 38 1 6.9814 -11.7166 3.2766 39 1 8.1718 -11.3913 1.9808 40 1 8.4127 -8.8131 1.4056 41 1 7.3503 -7.7666 2.3963 42 1 6.0419 -3.5754 -1.5673 43 1 7.9656 -4.5261 -2.7704 44 1 8.0503 -6.9368 -3.2540 45 1 6.2190 -8.4106 -2.5283 46 1 4.2913 -7.4791 -1.3166 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000788458030.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:04:22 Heat of formation + Delta-G solvation = 98.661603 kcal Electronic energy + Delta-G solvation = -28578.808602 eV Core-core repulsion = 24663.893208 eV Total energy + Delta-G solvation = -3914.915394 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.38616 -39.63036 -38.54543 -36.46168 -34.20924 -33.20519 -32.24279 -30.84620 -30.55016 -29.98388 -29.37383 -27.69191 -26.19828 -23.59997 -23.33388 -22.57987 -22.27640 -21.45624 -21.19029 -19.86375 -19.15344 -17.40456 -16.93109 -16.82421 -16.48865 -16.03959 -15.77052 -15.54546 -14.97956 -14.68785 -14.44798 -14.14627 -13.82303 -13.67544 -13.44878 -13.32343 -13.13646 -12.72537 -12.58473 -12.34141 -12.25019 -12.05470 -11.90211 -11.80313 -11.45042 -11.31867 -11.22568 -10.97206 -10.86334 -10.74602 -10.27466 -10.18381 -10.13691 -9.78378 -9.36139 -8.95463 -8.69979 -8.61528 -8.54347 -8.04235 -7.08030 -6.61899 -4.37282 1.39871 1.70564 1.96396 2.80612 2.90307 3.31740 3.36412 3.38477 3.57168 3.59495 3.72510 4.16360 4.26719 4.37597 4.56795 4.68705 4.78973 4.85558 5.03323 5.09402 5.13396 5.15538 5.22059 5.23065 5.32045 5.33204 5.35814 5.48680 5.54134 5.67920 5.71089 5.75004 5.81339 6.00639 6.08219 6.16212 6.29793 6.46850 6.48908 6.56788 6.69229 6.69850 6.73582 6.93467 7.11325 7.21822 7.26143 7.57715 7.65770 8.27295 8.38259 8.55765 8.64282 9.30696 10.75141 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.014064 B = 0.002687 C = 0.002456 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1990.424314 B =10419.533952 C =11398.722115 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.025 3.975 3 Si 1.075 2.925 4 H -0.284 1.284 5 H -0.280 1.280 6 H -0.286 1.286 7 C -0.609 4.609 8 H 0.064 0.936 9 C 0.246 3.754 10 N -0.321 5.321 11 C 0.081 3.919 12 C -0.211 4.211 13 C 0.123 3.877 14 N -0.238 5.238 15 N -0.662 5.662 16 C 0.163 3.837 17 H 0.097 0.903 18 C -0.164 4.164 19 C 0.044 3.956 20 O -0.377 6.377 21 C 0.026 3.974 22 C 0.106 3.894 23 C 0.010 3.990 24 C -0.093 4.093 25 C -0.130 4.130 26 C -0.121 4.121 27 C -0.134 4.134 28 C -0.054 4.054 29 N -0.256 5.256 30 H 0.267 0.733 31 H 0.046 0.954 32 H 0.037 0.963 33 H 0.173 0.827 34 H 0.103 0.897 35 H 0.371 0.629 36 H 0.080 0.920 37 H 0.086 0.914 38 H 0.090 0.910 39 H 0.060 0.940 40 H 0.065 0.935 41 H 0.096 0.904 42 H 0.122 0.878 43 H 0.118 0.882 44 H 0.115 0.885 45 H 0.115 0.885 46 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.080 -21.588 1.338 24.774 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.539 5.539 2 C -0.180 4.180 3 Si 0.902 3.098 4 H -0.210 1.210 5 H -0.205 1.205 6 H -0.212 1.212 7 C -0.647 4.647 8 H 0.082 0.918 9 C 0.128 3.872 10 N -0.099 5.099 11 C -0.072 4.072 12 C -0.227 4.227 13 C -0.089 4.089 14 N -0.045 5.045 15 N -0.399 5.399 16 C 0.055 3.945 17 H 0.115 0.885 18 C -0.203 4.203 19 C -0.033 4.033 20 O -0.296 6.296 21 C -0.053 4.053 22 C -0.062 4.062 23 C 0.008 3.992 24 C -0.112 4.112 25 C -0.148 4.148 26 C -0.139 4.139 27 C -0.152 4.152 28 C -0.073 4.073 29 N -0.077 5.077 30 H 0.077 0.923 31 H 0.064 0.936 32 H 0.055 0.945 33 H 0.190 0.810 34 H 0.120 0.880 35 H 0.208 0.792 36 H 0.099 0.901 37 H 0.105 0.895 38 H 0.108 0.892 39 H 0.079 0.921 40 H 0.083 0.917 41 H 0.115 0.885 42 H 0.140 0.860 43 H 0.136 0.864 44 H 0.133 0.867 45 H 0.133 0.867 46 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 12.593 -18.866 0.058 22.682 hybrid contribution -0.762 -2.604 1.493 3.096 sum 11.831 -21.469 1.551 24.562 Atomic orbital electron populations 1.70858 1.06787 1.30425 1.45790 1.25914 0.96278 1.02805 0.93023 0.83436 0.74856 0.74556 0.76945 1.21034 1.20493 1.21180 1.22074 0.95397 0.90308 1.56931 0.91761 1.19830 0.86409 0.82812 0.98186 1.48944 1.23826 1.19105 1.18021 1.22425 0.99018 0.89710 0.96005 1.19056 1.02789 0.99439 1.01371 1.22986 0.94035 0.93996 0.97874 1.74432 1.14939 0.96848 1.18253 1.47938 1.29094 1.25377 1.37524 1.21783 0.84271 0.88818 0.99586 0.88536 1.23286 1.00418 0.95994 1.00643 1.23390 0.96401 0.87282 0.96249 1.89213 1.91889 1.16791 1.31703 1.24204 0.97544 0.94485 0.89040 1.21857 0.96225 0.93328 0.94819 1.17643 0.91544 0.92868 0.97107 1.21260 0.93100 0.99792 0.97098 1.20954 0.98322 0.95291 1.00242 1.21072 0.98587 0.93847 1.00418 1.20884 0.94694 0.99178 1.00428 1.20948 0.97750 0.93670 0.94979 1.77530 1.00836 1.16197 1.13181 0.92281 0.93600 0.94521 0.80977 0.87967 0.79170 0.90107 0.89497 0.89181 0.92142 0.91728 0.88536 0.85957 0.86371 0.86742 0.86745 0.86208 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.84 13.65 55.43 0.76 -25.08 16 2 C 0.02 0.68 5.46 -17.82 -0.10 0.58 16 3 Si 1.08 24.65 29.90 -169.99 -5.08 19.56 16 4 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 5 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 6 H -0.29 -6.28 7.11 56.52 0.40 -5.88 16 7 C -0.61 -16.71 9.22 -34.44 -0.32 -17.03 16 8 H 0.06 1.85 7.81 -52.49 -0.41 1.44 16 9 C 0.25 5.96 5.53 -5.19 -0.03 5.93 16 10 N -0.32 -7.07 3.64 -62.24 -0.23 -7.30 16 11 C 0.08 1.45 11.35 -16.84 -0.19 1.26 16 12 C -0.21 -3.68 6.23 -103.37 -0.64 -4.32 16 13 C 0.12 1.74 10.88 -14.66 -0.16 1.58 16 14 N -0.24 -3.28 7.59 32.16 0.24 -3.03 16 15 N -0.66 -7.31 6.13 -3.56 -0.02 -7.34 16 16 C 0.16 1.51 4.14 -66.36 -0.28 1.24 16 17 H 0.10 0.93 8.14 -51.93 -0.42 0.50 16 18 C -0.16 -1.11 6.85 -25.16 -0.17 -1.28 16 19 C 0.04 0.32 7.63 37.93 0.29 0.61 16 20 O -0.38 -4.09 11.66 -35.23 -0.41 -4.50 16 21 C 0.03 0.26 7.38 37.94 0.28 0.54 16 22 C 0.11 2.07 6.85 -80.56 -0.55 1.51 16 23 C 0.01 0.18 5.46 -104.91 -0.57 -0.40 16 24 C -0.09 -1.51 9.78 -39.24 -0.38 -1.90 16 25 C -0.13 -1.72 10.03 -39.63 -0.40 -2.12 16 26 C -0.12 -1.42 10.04 -39.51 -0.40 -1.82 16 27 C -0.13 -1.63 10.03 -39.63 -0.40 -2.02 16 28 C -0.05 -0.79 7.54 -39.24 -0.30 -1.08 16 29 N -0.26 -5.83 12.34 34.56 0.43 -5.40 16 30 H 0.27 7.43 7.22 -40.82 -0.29 7.13 16 31 H 0.05 1.06 7.92 -51.93 -0.41 0.65 16 32 H 0.04 0.93 8.01 -51.93 -0.42 0.52 16 33 H 0.17 2.39 8.06 -52.49 -0.42 1.97 16 34 H 0.10 1.18 8.02 -52.49 -0.42 0.76 16 35 H 0.37 3.70 8.40 -182.60 -1.53 2.16 16 36 H 0.08 0.54 7.74 -51.93 -0.40 0.13 16 37 H 0.09 0.45 8.14 -51.93 -0.42 0.03 16 38 H 0.09 0.53 8.14 -51.93 -0.42 0.11 16 39 H 0.06 0.36 8.14 -51.93 -0.42 -0.07 16 40 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 41 H 0.10 1.16 8.06 -51.93 -0.42 0.74 16 42 H 0.12 2.09 8.06 -52.48 -0.42 1.66 16 43 H 0.12 1.30 8.06 -52.49 -0.42 0.88 16 44 H 0.11 1.04 8.06 -52.49 -0.42 0.61 16 45 H 0.11 1.10 8.06 -52.49 -0.42 0.67 16 46 H 0.12 1.77 6.98 -52.48 -0.37 1.40 16 LS Contribution 391.82 15.07 5.90 5.90 Total: -1.00 -31.79 391.82 -10.42 -42.21 By element: Atomic # 1 Polarization: 11.39 SS G_CDS: -7.70 Total: 3.70 kcal Atomic # 6 Polarization: -14.40 SS G_CDS: -4.31 Total: -18.71 kcal Atomic # 7 Polarization: -49.33 SS G_CDS: 1.18 Total: -48.15 kcal Atomic # 8 Polarization: -4.09 SS G_CDS: -0.41 Total: -4.50 kcal Atomic # 14 Polarization: 24.65 SS G_CDS: -5.08 Total: 19.56 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -31.79 -10.42 -42.21 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000788458030.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 140.869 kcal (2) G-P(sol) polarization free energy of solvation -31.787 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 109.082 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.420 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.208 kcal (6) G-S(sol) free energy of system = (1) + (5) 98.662 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds