Wall clock time and date at job start Sat Apr 11 2020 06:04:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86807 * 120.00330 * 2 1 4 4 H 1.48495 * 109.47330 * 239.99927 * 3 2 1 5 5 H 1.48506 * 109.46833 * 359.97438 * 3 2 1 6 6 H 1.48492 * 109.46993 * 119.99429 * 3 2 1 7 7 C 1.37878 * 120.00278 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00524 * 179.97438 * 7 2 1 9 9 C 1.50704 * 119.99461 * 0.02562 * 7 2 1 10 10 N 1.46504 * 109.47049 * 180.02562 * 9 7 2 11 11 C 1.34736 * 125.27117 * 124.99969 * 10 9 7 12 12 C 1.36682 * 108.04986 * 179.97438 * 11 10 9 13 13 C 1.47533 * 126.67944 * 180.02562 * 12 11 10 14 14 N 1.29698 * 120.00575 * 185.52405 * 13 12 11 15 15 N 1.40098 * 120.00507 * 180.02562 * 14 13 12 16 16 C 1.46500 * 120.00408 * 180.02562 * 15 14 13 17 17 H 1.08993 * 110.45672 * 330.70085 * 16 15 14 18 18 C 1.54510 * 110.51300 * 208.09453 * 16 15 14 19 19 C 1.54476 * 104.06144 * 241.35781 * 18 16 15 20 20 O 1.44421 * 104.80748 * 23.97705 * 19 18 16 21 21 C 1.44784 * 105.29569 * 319.45381 * 20 19 18 22 22 C 1.46440 * 106.64942 * 0.02562 * 12 11 10 23 23 C 1.48271 * 126.47942 * 179.97438 * 22 12 11 24 24 C 1.39397 * 120.12309 * 224.71780 * 23 22 12 25 25 C 1.38004 * 119.86969 * 179.72383 * 24 23 22 26 26 C 1.38328 * 120.12593 * 0.55843 * 25 24 23 27 27 C 1.38330 * 120.25671 * 359.71707 * 26 25 24 28 28 C 1.38006 * 120.12646 * 0.02562 * 27 26 25 29 29 N 1.31555 * 107.03085 * 359.74594 * 22 12 11 30 30 H 0.96997 * 120.00069 * 179.97438 * 1 2 3 31 31 H 1.08994 * 109.47550 * 300.00098 * 9 7 2 32 32 H 1.08999 * 109.47358 * 60.00691 * 9 7 2 33 33 H 1.07999 * 125.97858 * 359.94766 * 11 10 9 34 34 H 1.08000 * 119.99526 * 5.52909 * 13 12 11 35 35 H 0.97004 * 119.99819 * 0.02562 * 15 14 13 36 36 H 1.09001 * 110.51235 * 0.02562 * 18 16 15 37 37 H 1.08996 * 110.51130 * 122.57112 * 18 16 15 38 38 H 1.09001 * 110.37163 * 142.81133 * 19 18 16 39 39 H 1.09005 * 110.37074 * 265.02850 * 19 18 16 40 40 H 1.09002 * 110.42970 * 281.78347 * 21 20 19 41 41 H 1.08997 * 110.48851 * 159.32312 * 21 20 19 42 42 H 1.08006 * 120.06169 * 0.02562 * 24 23 22 43 43 H 1.07995 * 119.93424 * 180.27160 * 25 24 23 44 44 H 1.08001 * 119.87157 * 179.69601 * 26 25 24 45 45 H 1.08001 * 119.93705 * 180.02562 * 27 26 25 46 46 H 1.08004 * 120.06524 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6964 -1.2124 5 1 1.2842 2.7465 -0.0006 6 1 3.1028 1.6964 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4991 0.0005 10 7 2.2030 -3.6127 0.0018 11 6 2.2283 -4.6137 0.9033 12 6 3.2529 -5.4557 0.5727 13 6 3.6476 -6.6858 1.2852 14 7 4.7106 -7.3335 0.9211 15 7 5.0851 -8.5019 1.5973 16 6 6.2862 -9.2332 1.1865 17 1 6.4712 -9.0940 0.1214 18 6 6.1460 -10.7354 1.5198 19 6 7.2992 -11.0092 2.5106 20 8 7.5902 -9.7244 3.1024 21 6 7.5083 -8.7745 2.0127 22 6 3.8829 -4.8992 -0.6264 23 6 5.0420 -5.4659 -1.3571 24 6 6.0798 -4.6346 -1.7752 25 6 7.1589 -5.1685 -2.4498 26 6 7.2062 -6.5241 -2.7214 27 6 6.1765 -7.3530 -2.3139 28 6 5.0949 -6.8310 -1.6339 29 7 3.2228 -3.8040 -0.9356 30 1 -0.4850 -0.8400 -0.0004 31 1 0.6240 -2.5567 0.8902 32 1 0.6247 -2.5571 -0.8897 33 1 1.5567 -4.7302 1.7410 34 1 3.0511 -7.0470 2.1099 35 1 4.5490 -8.8268 2.3377 36 1 5.1828 -10.9341 1.9899 37 1 6.2617 -11.3388 0.6195 38 1 6.9814 -11.7166 3.2766 39 1 8.1718 -11.3913 1.9808 40 1 8.4127 -8.8131 1.4056 41 1 7.3503 -7.7666 2.3963 42 1 6.0419 -3.5754 -1.5673 43 1 7.9656 -4.5261 -2.7704 44 1 8.0503 -6.9368 -3.2540 45 1 6.2190 -8.4106 -2.5283 46 1 4.2913 -7.4791 -1.3166 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000788458030.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:04:21 Heat of formation + Delta-G solvation = 79.628995 kcal Electronic energy + Delta-G solvation = -28579.633918 eV Core-core repulsion = 24663.893208 eV Total energy + Delta-G solvation = -3915.740710 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.84814 -40.34148 -39.66744 -37.48766 -36.06847 -34.32293 -33.63572 -31.93185 -31.67435 -31.27789 -30.36496 -28.85170 -27.73089 -25.36380 -24.34699 -23.58736 -23.36389 -22.70593 -21.95255 -21.20120 -20.49495 -19.17424 -18.24023 -17.64446 -17.44613 -17.09153 -16.80610 -16.42009 -16.29918 -15.98908 -15.68275 -15.54827 -15.34481 -14.82833 -14.68256 -14.41491 -14.12621 -14.06836 -13.81677 -13.74200 -13.48178 -13.33721 -13.19428 -12.78510 -12.62198 -12.45829 -12.34448 -12.08053 -11.98067 -11.96018 -11.87352 -11.65766 -11.20864 -10.86854 -10.83156 -10.72728 -10.47119 -9.94165 -9.68181 -9.29153 -8.84202 -8.22881 -6.57376 0.24349 0.60919 0.71026 1.41365 1.49076 1.55089 1.66702 1.77565 2.06646 2.36444 2.46152 2.99171 3.03590 3.07225 3.53155 3.62396 3.75812 3.93078 4.12231 4.14816 4.18088 4.21833 4.22086 4.25008 4.36082 4.39543 4.45591 4.59717 4.66864 4.71269 4.72426 4.79624 4.85327 4.87023 4.94800 5.02273 5.04362 5.10140 5.24426 5.40211 5.54710 5.57567 5.67909 5.76423 5.83024 5.86326 5.88075 6.18376 6.23401 6.36877 6.39510 6.88521 7.17415 7.64822 8.57012 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.014064 B = 0.002687 C = 0.002456 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1990.424314 B =10419.533952 C =11398.722115 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C -0.017 4.017 3 Si 1.116 2.884 4 H -0.278 1.278 5 H -0.273 1.273 6 H -0.271 1.271 7 C -0.621 4.621 8 H 0.042 0.958 9 C 0.258 3.742 10 N -0.349 5.349 11 C 0.076 3.924 12 C -0.205 4.205 13 C 0.106 3.894 14 N -0.239 5.239 15 N -0.654 5.654 16 C 0.158 3.842 17 H 0.099 0.901 18 C -0.153 4.153 19 C 0.039 3.961 20 O -0.404 6.404 21 C 0.027 3.973 22 C 0.104 3.896 23 C -0.020 4.020 24 C -0.119 4.119 25 C -0.130 4.130 26 C -0.108 4.108 27 C -0.124 4.124 28 C -0.055 4.055 29 N -0.315 5.315 30 H 0.262 0.738 31 H 0.057 0.943 32 H 0.015 0.985 33 H 0.210 0.790 34 H 0.133 0.867 35 H 0.378 0.622 36 H 0.083 0.917 37 H 0.110 0.890 38 H 0.102 0.898 39 H 0.076 0.924 40 H 0.078 0.922 41 H 0.069 0.931 42 H 0.096 0.904 43 H 0.140 0.860 44 H 0.155 0.845 45 H 0.151 0.849 46 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.211 -24.793 1.300 28.607 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.558 5.558 2 C -0.217 4.217 3 Si 0.937 3.063 4 H -0.203 1.203 5 H -0.198 1.198 6 H -0.196 1.196 7 C -0.659 4.659 8 H 0.060 0.940 9 C 0.138 3.862 10 N -0.128 5.128 11 C -0.074 4.074 12 C -0.220 4.220 13 C -0.106 4.106 14 N -0.046 5.046 15 N -0.392 5.392 16 C 0.052 3.948 17 H 0.117 0.883 18 C -0.192 4.192 19 C -0.037 4.037 20 O -0.323 6.323 21 C -0.051 4.051 22 C -0.065 4.065 23 C -0.022 4.022 24 C -0.138 4.138 25 C -0.148 4.148 26 C -0.126 4.126 27 C -0.142 4.142 28 C -0.075 4.075 29 N -0.136 5.136 30 H 0.071 0.929 31 H 0.075 0.925 32 H 0.033 0.967 33 H 0.226 0.774 34 H 0.150 0.850 35 H 0.216 0.784 36 H 0.102 0.898 37 H 0.128 0.872 38 H 0.120 0.880 39 H 0.094 0.906 40 H 0.096 0.904 41 H 0.088 0.912 42 H 0.114 0.886 43 H 0.158 0.842 44 H 0.172 0.828 45 H 0.169 0.831 46 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges 14.731 -22.120 0.034 26.576 hybrid contribution -1.225 -1.863 1.487 2.680 sum 13.506 -23.983 1.521 27.566 Atomic orbital electron populations 1.70944 1.07366 1.30215 1.47284 1.27204 0.96451 1.05929 0.92106 0.82923 0.74217 0.71375 0.77756 1.20343 1.19782 1.19597 1.22263 0.94538 0.92245 1.56873 0.93976 1.19424 0.86516 0.82786 0.97449 1.48655 1.24428 1.19985 1.19755 1.23066 0.99751 0.88481 0.96078 1.19408 1.01865 1.00257 1.00438 1.22868 0.95256 0.93429 0.99052 1.74322 1.14410 0.97379 1.18455 1.48078 1.29501 1.24290 1.37327 1.21978 0.83113 0.90241 0.99497 0.88252 1.23257 1.00397 0.94023 1.01533 1.23619 0.97267 0.85984 0.96845 1.89189 1.92164 1.18351 1.32629 1.24135 0.98604 0.93303 0.89077 1.22496 0.96192 0.92406 0.95380 1.17806 0.91290 0.94223 0.98900 1.21237 0.94755 0.98745 0.99107 1.21234 0.97662 0.96710 0.99189 1.21520 0.99308 0.92834 0.98956 1.21287 0.93365 1.01019 0.98551 1.20961 0.98707 0.92281 0.95544 1.77424 1.02435 1.18703 1.15029 0.92884 0.92519 0.96682 0.77356 0.85046 0.78364 0.89793 0.87188 0.87979 0.90555 0.90378 0.91213 0.88552 0.84223 0.82773 0.83138 0.86549 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -54.06 13.65 21.45 0.29 -53.77 16 2 C -0.02 -0.96 5.46 84.66 0.46 -0.50 16 3 Si 1.12 50.51 29.90 68.60 2.05 52.56 16 4 H -0.28 -12.17 7.11 99.48 0.71 -11.46 16 5 H -0.27 -11.99 7.11 99.48 0.71 -11.28 16 6 H -0.27 -11.51 7.11 99.48 0.71 -10.80 16 7 C -0.62 -35.70 9.22 25.60 0.24 -35.46 16 8 H 0.04 2.56 7.81 -2.91 -0.02 2.53 16 9 C 0.26 13.20 5.53 85.63 0.47 13.67 16 10 N -0.35 -16.25 3.64 -350.81 -1.28 -17.53 16 11 C 0.08 2.80 11.35 83.88 0.95 3.75 16 12 C -0.21 -7.27 6.23 -19.05 -0.12 -7.39 16 13 C 0.11 2.90 10.88 87.46 0.95 3.85 16 14 N -0.24 -6.23 7.59 -52.16 -0.40 -6.63 16 15 N -0.65 -12.98 6.13 -165.16 -1.01 -14.00 16 16 C 0.16 2.49 4.14 46.01 0.19 2.68 16 17 H 0.10 1.54 8.14 -2.39 -0.02 1.52 16 18 C -0.15 -1.50 6.85 31.61 0.22 -1.28 16 19 C 0.04 0.44 7.63 72.48 0.55 0.99 16 20 O -0.40 -7.97 11.66 -148.98 -1.74 -9.71 16 21 C 0.03 0.50 7.38 72.49 0.53 1.04 16 22 C 0.10 4.25 6.85 43.99 0.30 4.55 16 23 C -0.02 -0.71 5.46 -20.05 -0.11 -0.82 16 24 C -0.12 -3.99 9.78 22.49 0.22 -3.77 16 25 C -0.13 -3.25 10.03 22.24 0.22 -3.03 16 26 C -0.11 -2.14 10.04 22.31 0.22 -1.92 16 27 C -0.12 -2.59 10.03 22.24 0.22 -2.37 16 28 C -0.06 -1.55 7.54 22.49 0.17 -1.38 16 29 N -0.32 -15.31 12.34 -44.56 -0.55 -15.86 16 30 H 0.26 15.09 7.22 -92.71 -0.67 14.43 16 31 H 0.06 2.74 7.92 -2.39 -0.02 2.72 16 32 H 0.02 0.83 8.01 -2.39 -0.02 0.81 16 33 H 0.21 5.69 8.06 -2.91 -0.02 5.67 16 34 H 0.13 2.77 8.02 -2.91 -0.02 2.74 16 35 H 0.38 6.62 8.40 -213.32 -1.79 4.83 16 36 H 0.08 0.81 7.74 -2.39 -0.02 0.79 16 37 H 0.11 0.62 8.14 -2.39 -0.02 0.60 16 38 H 0.10 0.89 8.14 -2.39 -0.02 0.87 16 39 H 0.08 0.62 8.14 -2.38 -0.02 0.60 16 40 H 0.08 1.20 8.14 -2.39 -0.02 1.18 16 41 H 0.07 1.65 8.06 -2.39 -0.02 1.63 16 42 H 0.10 3.61 8.06 -2.91 -0.02 3.59 16 43 H 0.14 2.80 8.06 -2.91 -0.02 2.77 16 44 H 0.15 1.90 8.06 -2.91 -0.02 1.88 16 45 H 0.15 2.07 8.06 -2.91 -0.02 2.05 16 46 H 0.12 3.29 6.98 -2.91 -0.02 3.27 16 Total: -1.00 -73.74 391.82 2.38 -71.36 By element: Atomic # 1 Polarization: 21.63 SS G_CDS: -0.70 Total: 20.94 kcal Atomic # 6 Polarization: -33.07 SS G_CDS: 5.70 Total: -27.37 kcal Atomic # 7 Polarization: -104.84 SS G_CDS: -2.94 Total: -107.78 kcal Atomic # 8 Polarization: -7.97 SS G_CDS: -1.74 Total: -9.71 kcal Atomic # 14 Polarization: 50.51 SS G_CDS: 2.05 Total: 52.56 kcal Total: -73.74 2.38 -71.36 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000788458030.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 150.989 kcal (2) G-P(sol) polarization free energy of solvation -73.738 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 77.251 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.378 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.360 kcal (6) G-S(sol) free energy of system = (1) + (5) 79.629 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds