Wall clock time and date at job start Sat Apr 11 2020 06:04:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30826 * 1 3 3 Si 1.86800 * 119.99843 * 2 1 4 4 H 1.48493 * 109.47212 * 239.99628 * 3 2 1 5 5 H 1.48504 * 109.47296 * 359.97438 * 3 2 1 6 6 H 1.48503 * 109.47225 * 119.99494 * 3 2 1 7 7 C 1.39942 * 120.00285 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00208 * 163.78163 * 7 2 1 9 9 C 1.41404 * 119.99989 * 343.77914 * 7 2 1 10 10 C 1.40732 * 120.24285 * 333.94378 * 9 7 2 11 11 C 1.37599 * 119.74217 * 179.97438 * 10 9 7 12 12 C 1.38651 * 120.24860 * 0.02562 * 11 10 9 13 13 C 1.38611 * 120.50559 * 359.97438 * 12 11 10 14 14 C 1.37645 * 120.24686 * 0.02562 * 13 12 11 15 15 C 1.50694 * 120.12747 * 179.97438 * 14 13 12 16 16 C 1.50700 * 109.47234 * 264.99954 * 15 14 13 17 17 O 1.21281 * 120.00071 * 0.02562 * 16 15 14 18 18 N 1.34776 * 119.99958 * 180.02562 * 16 15 14 19 19 C 1.46926 * 120.63044 * 0.02562 * 18 16 15 20 20 C 1.53194 * 108.77406 * 233.58224 * 19 18 16 21 21 C 1.53037 * 109.31523 * 305.36526 * 20 19 18 22 22 C 1.53037 * 109.53791 * 61.36748 * 21 20 19 23 23 H 1.09004 * 109.49992 * 58.61505 * 22 21 20 24 24 N 1.46502 * 109.49956 * 178.68102 * 22 21 20 25 25 C 1.35317 * 125.86353 * 84.71330 * 24 22 21 26 26 C 1.35354 * 106.17174 * 179.90559 * 25 24 22 27 27 N 1.33777 * 106.49478 * 0.35026 * 26 25 24 28 28 N 1.28634 * 108.88509 * 359.77576 * 27 26 25 29 29 C 1.46924 * 120.63177 * 179.72343 * 18 16 15 30 30 H 0.96994 * 120.00235 * 0.02562 * 1 2 3 31 31 H 1.07997 * 120.12400 * 0.25378 * 10 9 7 32 32 H 1.08003 * 119.87040 * 179.97438 * 11 10 9 33 33 H 1.08005 * 119.74907 * 180.02562 * 12 11 10 34 34 H 1.07996 * 119.87831 * 180.02562 * 13 12 11 35 35 H 1.09002 * 109.47439 * 25.00593 * 15 14 13 36 36 H 1.09001 * 109.46854 * 145.00163 * 15 14 13 37 37 H 1.08999 * 109.59022 * 353.37153 * 19 18 16 38 38 H 1.09001 * 109.58616 * 113.66047 * 19 18 16 39 39 H 1.08999 * 109.49896 * 65.31986 * 20 19 18 40 40 H 1.09007 * 109.49712 * 185.37815 * 20 19 18 41 41 H 1.08999 * 109.45757 * 181.38433 * 21 20 19 42 42 H 1.08999 * 109.46053 * 301.34361 * 21 20 19 43 43 H 1.07997 * 126.90970 * 0.02562 * 25 24 22 44 44 H 1.07991 * 126.74969 * 180.12424 * 26 25 24 45 45 H 1.08995 * 109.58972 * 246.20249 * 29 18 16 46 46 H 1.09001 * 109.58716 * 6.62645 * 29 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2422 1.6178 0.0000 4 1 3.0960 1.6964 -1.2124 5 1 1.2772 2.7465 -0.0006 6 1 3.0959 1.6965 1.2126 7 6 2.0080 -1.2119 0.0005 8 1 3.0558 -1.2306 -0.2607 9 6 1.3433 -2.4120 0.3432 10 6 0.2122 -2.3817 1.1799 11 6 -0.4271 -3.5557 1.5063 12 6 0.0395 -4.7652 1.0145 13 6 1.1526 -4.8069 0.1896 14 6 1.8079 -3.6451 -0.1500 15 6 3.0181 -3.6936 -1.0466 16 6 4.2669 -3.7258 -0.2036 17 8 4.1824 -3.7113 1.0062 18 7 5.4776 -3.7708 -0.7941 19 6 5.5960 -3.7883 -2.2585 20 6 6.4556 -4.9880 -2.6692 21 6 7.7948 -4.9276 -1.9310 22 6 7.5512 -5.0022 -0.4220 23 1 7.0242 -5.9262 -0.1837 24 7 8.8354 -4.9761 0.2826 25 6 9.5312 -3.8661 0.6216 26 6 10.6469 -4.2990 1.2539 27 7 10.5836 -5.6353 1.2638 28 7 9.4983 -6.0050 0.6806 29 6 6.7042 -3.7965 0.0142 30 1 -0.4850 0.8400 -0.0004 31 1 -0.1553 -1.4403 1.5607 32 1 -1.2951 -3.5349 2.1487 33 1 -0.4687 -5.6817 1.2755 34 1 1.5071 -5.7545 -0.1881 35 1 2.9752 -4.5889 -1.6669 36 1 3.0332 -2.8100 -1.6847 37 1 4.6055 -3.8788 -2.7042 38 1 6.0667 -2.8657 -2.5981 39 1 5.9386 -5.9119 -2.4099 40 1 6.6309 -4.9588 -3.7447 41 1 8.4179 -5.7668 -2.2401 42 1 8.3002 -3.9923 -2.1715 43 1 9.2515 -2.8410 0.4283 44 1 11.4350 -3.6864 1.6659 45 1 7.2654 -2.8756 -0.1439 46 1 6.4450 -3.8924 1.0686 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000819641270.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:04:28 Heat of formation + Delta-G solvation = 84.636284 kcal Electronic energy + Delta-G solvation = -29425.243386 eV Core-core repulsion = 25509.719808 eV Total energy + Delta-G solvation = -3915.523578 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -43.44458 -40.15089 -38.06329 -37.04418 -34.71501 -33.66660 -32.49358 -31.94317 -31.23293 -30.22789 -29.49005 -27.20693 -25.55026 -24.98320 -24.30140 -22.77498 -22.21143 -21.09094 -20.92864 -19.91677 -18.75909 -17.82427 -17.19321 -16.82179 -16.42844 -15.82691 -15.55600 -15.34097 -15.02658 -14.67105 -14.49037 -14.41693 -14.15846 -13.76311 -13.63090 -13.30658 -13.05059 -12.85096 -12.61283 -12.06610 -11.90688 -11.77571 -11.61935 -11.54772 -11.46694 -11.31654 -11.22168 -11.12261 -11.06649 -11.00580 -10.73916 -10.45426 -10.24675 -9.55660 -9.53288 -9.42581 -9.34576 -9.20164 -8.69321 -7.35922 -7.34006 -6.78007 -4.39560 1.43063 1.99037 2.43116 2.73816 2.88395 3.02075 3.04152 3.07643 3.20437 3.23702 3.88631 3.97222 4.14240 4.31239 4.41966 4.57810 4.61226 4.68182 4.87862 4.97921 5.03710 5.05627 5.21404 5.27570 5.33657 5.46771 5.52447 5.59418 5.61798 5.70782 5.82046 5.90776 5.97787 6.00234 6.22907 6.32632 6.34333 6.46640 6.51220 6.74532 7.03736 7.25011 7.37811 7.47582 7.61998 7.87878 8.01447 8.09137 8.26527 8.35254 8.56852 8.62173 8.86558 8.96859 10.16216 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.012585 B = 0.003163 C = 0.002877 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2224.363316 B = 8850.478985 C = 9731.524012 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.794 5.794 2 C 0.078 3.922 3 Si 0.903 3.097 4 H -0.266 1.266 5 H -0.278 1.278 6 H -0.264 1.264 7 C -0.458 4.458 8 H 0.073 0.927 9 C 0.130 3.870 10 C -0.159 4.159 11 C -0.106 4.106 12 C -0.239 4.239 13 C -0.080 4.080 14 C -0.185 4.185 15 C -0.066 4.066 16 C 0.520 3.480 17 O -0.512 6.512 18 N -0.624 5.624 19 C 0.103 3.897 20 C -0.131 4.131 21 C -0.126 4.126 22 C 0.129 3.871 23 H 0.118 0.882 24 N -0.280 5.280 25 C -0.048 4.048 26 C -0.054 4.054 27 N -0.275 5.275 28 N -0.086 5.086 29 C 0.108 3.892 30 H 0.281 0.719 31 H 0.117 0.883 32 H 0.086 0.914 33 H 0.085 0.915 34 H 0.084 0.916 35 H 0.078 0.922 36 H 0.098 0.902 37 H 0.099 0.901 38 H 0.071 0.929 39 H 0.075 0.925 40 H 0.087 0.913 41 H 0.077 0.923 42 H 0.075 0.925 43 H 0.189 0.811 44 H 0.189 0.811 45 H 0.074 0.926 46 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.739 -3.133 -7.472 15.951 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.420 5.420 2 C -0.140 4.140 3 Si 0.727 3.273 4 H -0.191 1.191 5 H -0.203 1.203 6 H -0.189 1.189 7 C -0.488 4.488 8 H 0.091 0.909 9 C 0.128 3.872 10 C -0.178 4.178 11 C -0.124 4.124 12 C -0.258 4.258 13 C -0.099 4.099 14 C -0.187 4.187 15 C -0.106 4.106 16 C 0.310 3.690 17 O -0.384 6.384 18 N -0.361 5.361 19 C -0.020 4.020 20 C -0.170 4.170 21 C -0.165 4.165 22 C 0.026 3.974 23 H 0.136 0.864 24 N -0.074 5.074 25 C -0.199 4.199 26 C -0.211 4.211 27 N -0.141 5.141 28 N -0.065 5.065 29 C -0.017 4.017 30 H 0.092 0.908 31 H 0.135 0.865 32 H 0.105 0.895 33 H 0.104 0.896 34 H 0.102 0.898 35 H 0.096 0.904 36 H 0.116 0.884 37 H 0.117 0.883 38 H 0.089 0.911 39 H 0.094 0.906 40 H 0.106 0.894 41 H 0.096 0.904 42 H 0.094 0.906 43 H 0.206 0.794 44 H 0.206 0.794 45 H 0.092 0.908 46 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges 13.461 -4.505 -6.723 15.707 hybrid contribution 0.331 2.067 -0.114 2.097 sum 13.792 -2.438 -6.837 15.585 Atomic orbital electron populations 1.69802 1.07464 1.29231 1.35485 1.25868 0.94694 1.01094 0.92339 0.86458 0.80258 0.80647 0.79898 1.19100 1.20281 1.18902 1.19414 0.97032 0.91003 1.41307 0.90939 1.17325 0.90795 0.91227 0.87903 1.21308 0.98980 0.96701 1.00837 1.20689 0.98618 0.93467 0.99672 1.20314 1.01520 0.96208 1.07775 1.20296 0.95923 0.95488 0.98155 1.19034 0.99338 0.94100 1.06247 1.20287 0.90106 1.02766 0.97408 1.21450 0.83856 0.74289 0.89384 1.90700 1.85972 1.46997 1.14771 1.48204 1.05000 1.76568 1.06355 1.21817 1.02068 0.98004 0.80072 1.21933 0.94588 0.99751 1.00701 1.21931 0.99113 1.03779 0.91681 1.22296 0.79254 1.03304 0.92519 0.86418 1.47558 1.17409 1.04919 1.37543 1.23686 0.95420 0.94943 1.05860 1.23616 1.00139 0.92290 1.05049 1.75110 1.11407 1.12142 1.15453 1.78329 1.01718 1.12836 1.13617 1.21726 0.86067 0.95182 0.98699 0.90846 0.86506 0.89541 0.89627 0.89782 0.90422 0.88361 0.88323 0.91068 0.90595 0.89406 0.90434 0.90595 0.79357 0.79395 0.90757 0.87791 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -19.97 10.96 55.55 0.61 -19.36 16 2 C 0.08 1.89 5.16 -17.34 -0.09 1.80 16 3 Si 0.90 18.20 29.59 -169.99 -5.03 13.17 16 4 H -0.27 -5.17 7.11 56.52 0.40 -4.77 16 5 H -0.28 -5.47 7.11 56.52 0.40 -5.07 16 6 H -0.26 -5.43 7.11 56.52 0.40 -5.03 16 7 C -0.46 -11.59 8.14 -37.74 -0.31 -11.90 16 8 H 0.07 1.77 6.68 -52.49 -0.35 1.42 16 9 C 0.13 3.36 5.56 -106.82 -0.59 2.77 16 10 C -0.16 -4.16 8.69 -38.87 -0.34 -4.50 16 11 C -0.11 -2.54 10.02 -39.66 -0.40 -2.94 16 12 C -0.24 -5.45 10.05 -39.29 -0.39 -5.84 16 13 C -0.08 -1.79 9.66 -39.66 -0.38 -2.18 16 14 C -0.19 -4.26 4.43 -103.91 -0.46 -4.72 16 15 C -0.07 -1.19 3.53 -29.04 -0.10 -1.29 16 16 C 0.52 9.28 7.33 -10.99 -0.08 9.20 16 17 O -0.51 -11.55 15.45 5.56 0.09 -11.46 16 18 N -0.62 -7.95 2.97 -172.48 -0.51 -8.46 16 19 C 0.10 0.91 6.34 -3.71 -0.02 0.89 16 20 C -0.13 -0.88 6.08 -26.61 -0.16 -1.04 16 21 C -0.13 -0.93 5.49 -26.69 -0.15 -1.08 16 22 C 0.13 1.27 3.29 -67.56 -0.22 1.05 16 23 H 0.12 1.27 8.14 -51.93 -0.42 0.85 16 24 N -0.28 -3.13 3.26 -54.40 -0.18 -3.31 16 25 C -0.05 -0.45 10.68 -17.04 -0.18 -0.63 16 26 C -0.05 -0.55 12.05 -17.73 -0.21 -0.76 16 27 N -0.28 -3.81 12.41 30.23 0.38 -3.44 16 28 N -0.09 -1.19 13.16 60.35 0.79 -0.40 16 29 C 0.11 1.23 5.48 -3.47 -0.02 1.21 16 30 H 0.28 6.46 8.30 -40.82 -0.34 6.12 16 31 H 0.12 3.15 6.21 -52.49 -0.33 2.82 16 32 H 0.09 1.86 8.06 -52.48 -0.42 1.43 16 33 H 0.09 1.73 8.06 -52.48 -0.42 1.31 16 34 H 0.08 1.64 8.06 -52.49 -0.42 1.21 16 35 H 0.08 1.14 7.60 -51.93 -0.39 0.75 16 36 H 0.10 1.73 6.86 -51.93 -0.36 1.37 16 37 H 0.10 0.85 5.93 -51.93 -0.31 0.54 16 38 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 39 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 40 H 0.09 0.42 8.14 -51.93 -0.42 0.00 16 41 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 42 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 43 H 0.19 1.14 7.18 -52.49 -0.38 0.76 16 44 H 0.19 1.27 8.06 -52.49 -0.42 0.84 16 45 H 0.07 0.70 6.94 -51.93 -0.36 0.34 16 46 H 0.10 1.48 7.00 -51.93 -0.36 1.11 16 LS Contribution 374.89 15.07 5.65 5.65 Total: -1.00 -32.56 374.89 -8.52 -41.08 By element: Atomic # 1 Polarization: 12.71 SS G_CDS: -6.20 Total: 6.51 kcal Atomic # 6 Polarization: -15.86 SS G_CDS: -4.12 Total: -19.98 kcal Atomic # 7 Polarization: -36.06 SS G_CDS: 1.09 Total: -34.97 kcal Atomic # 8 Polarization: -11.55 SS G_CDS: 0.09 Total: -11.46 kcal Atomic # 14 Polarization: 18.20 SS G_CDS: -5.03 Total: 13.17 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -32.56 -8.52 -41.08 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000819641270.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 125.721 kcal (2) G-P(sol) polarization free energy of solvation -32.564 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 93.156 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.520 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.084 kcal (6) G-S(sol) free energy of system = (1) + (5) 84.636 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds