Wall clock time and date at job start Sat Apr 11 2020 06:04:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30826 * 1 3 3 Si 1.86800 * 119.99843 * 2 1 4 4 H 1.48493 * 109.47212 * 239.99628 * 3 2 1 5 5 H 1.48504 * 109.47296 * 359.97438 * 3 2 1 6 6 H 1.48503 * 109.47225 * 119.99494 * 3 2 1 7 7 C 1.39942 * 120.00285 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00208 * 163.78163 * 7 2 1 9 9 C 1.41404 * 119.99989 * 343.77914 * 7 2 1 10 10 C 1.40732 * 120.24285 * 333.94378 * 9 7 2 11 11 C 1.37599 * 119.74217 * 179.97438 * 10 9 7 12 12 C 1.38651 * 120.24860 * 0.02562 * 11 10 9 13 13 C 1.38611 * 120.50559 * 359.97438 * 12 11 10 14 14 C 1.37645 * 120.24686 * 0.02562 * 13 12 11 15 15 C 1.50694 * 120.12747 * 179.97438 * 14 13 12 16 16 C 1.50700 * 109.47234 * 264.99954 * 15 14 13 17 17 O 1.21281 * 120.00071 * 0.02562 * 16 15 14 18 18 N 1.34776 * 119.99958 * 180.02562 * 16 15 14 19 19 C 1.46926 * 120.63044 * 0.02562 * 18 16 15 20 20 C 1.53194 * 108.77406 * 233.58224 * 19 18 16 21 21 C 1.53037 * 109.31523 * 305.36526 * 20 19 18 22 22 C 1.53037 * 109.53791 * 61.36748 * 21 20 19 23 23 H 1.09004 * 109.49992 * 58.61505 * 22 21 20 24 24 N 1.46502 * 109.49956 * 178.68102 * 22 21 20 25 25 C 1.35317 * 125.86353 * 84.71330 * 24 22 21 26 26 C 1.35354 * 106.17174 * 179.90559 * 25 24 22 27 27 N 1.33777 * 106.49478 * 0.35026 * 26 25 24 28 28 N 1.28634 * 108.88509 * 359.77576 * 27 26 25 29 29 C 1.46924 * 120.63177 * 179.72343 * 18 16 15 30 30 H 0.96994 * 120.00235 * 0.02562 * 1 2 3 31 31 H 1.07997 * 120.12400 * 0.25378 * 10 9 7 32 32 H 1.08003 * 119.87040 * 179.97438 * 11 10 9 33 33 H 1.08005 * 119.74907 * 180.02562 * 12 11 10 34 34 H 1.07996 * 119.87831 * 180.02562 * 13 12 11 35 35 H 1.09002 * 109.47439 * 25.00593 * 15 14 13 36 36 H 1.09001 * 109.46854 * 145.00163 * 15 14 13 37 37 H 1.08999 * 109.59022 * 353.37153 * 19 18 16 38 38 H 1.09001 * 109.58616 * 113.66047 * 19 18 16 39 39 H 1.08999 * 109.49896 * 65.31986 * 20 19 18 40 40 H 1.09007 * 109.49712 * 185.37815 * 20 19 18 41 41 H 1.08999 * 109.45757 * 181.38433 * 21 20 19 42 42 H 1.08999 * 109.46053 * 301.34361 * 21 20 19 43 43 H 1.07997 * 126.90970 * 0.02562 * 25 24 22 44 44 H 1.07991 * 126.74969 * 180.12424 * 26 25 24 45 45 H 1.08995 * 109.58972 * 246.20249 * 29 18 16 46 46 H 1.09001 * 109.58716 * 6.62645 * 29 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2422 1.6178 0.0000 4 1 3.0960 1.6964 -1.2124 5 1 1.2772 2.7465 -0.0006 6 1 3.0959 1.6965 1.2126 7 6 2.0080 -1.2119 0.0005 8 1 3.0558 -1.2306 -0.2607 9 6 1.3433 -2.4120 0.3432 10 6 0.2122 -2.3817 1.1799 11 6 -0.4271 -3.5557 1.5063 12 6 0.0395 -4.7652 1.0145 13 6 1.1526 -4.8069 0.1896 14 6 1.8079 -3.6451 -0.1500 15 6 3.0181 -3.6936 -1.0466 16 6 4.2669 -3.7258 -0.2036 17 8 4.1824 -3.7113 1.0062 18 7 5.4776 -3.7708 -0.7941 19 6 5.5960 -3.7883 -2.2585 20 6 6.4556 -4.9880 -2.6692 21 6 7.7948 -4.9276 -1.9310 22 6 7.5512 -5.0022 -0.4220 23 1 7.0242 -5.9262 -0.1837 24 7 8.8354 -4.9761 0.2826 25 6 9.5312 -3.8661 0.6216 26 6 10.6469 -4.2990 1.2539 27 7 10.5836 -5.6353 1.2638 28 7 9.4983 -6.0050 0.6806 29 6 6.7042 -3.7965 0.0142 30 1 -0.4850 0.8400 -0.0004 31 1 -0.1553 -1.4403 1.5607 32 1 -1.2951 -3.5349 2.1487 33 1 -0.4687 -5.6817 1.2755 34 1 1.5071 -5.7545 -0.1881 35 1 2.9752 -4.5889 -1.6669 36 1 3.0332 -2.8100 -1.6847 37 1 4.6055 -3.8788 -2.7042 38 1 6.0667 -2.8657 -2.5981 39 1 5.9386 -5.9119 -2.4099 40 1 6.6309 -4.9588 -3.7447 41 1 8.4179 -5.7668 -2.2401 42 1 8.3002 -3.9923 -2.1715 43 1 9.2515 -2.8410 0.4283 44 1 11.4350 -3.6864 1.6659 45 1 7.2654 -2.8756 -0.1439 46 1 6.4450 -3.8924 1.0686 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000819641270.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:04:27 Heat of formation + Delta-G solvation = 65.292227 kcal Electronic energy + Delta-G solvation = -29426.082207 eV Core-core repulsion = 25509.719808 eV Total energy + Delta-G solvation = -3916.362399 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -44.28586 -41.30959 -39.50344 -38.44430 -35.67058 -35.48911 -33.53994 -33.28276 -32.08275 -31.37796 -31.11430 -28.69411 -27.05406 -26.16371 -25.25953 -23.61097 -23.01539 -22.82126 -22.16896 -21.26445 -19.85450 -19.05527 -18.73169 -17.94262 -17.36343 -17.23902 -16.83560 -16.40027 -16.14747 -16.04747 -15.56988 -15.34507 -15.24923 -15.19133 -14.89042 -14.42116 -14.33725 -14.06457 -13.87136 -13.52468 -13.35195 -12.91781 -12.85774 -12.76090 -12.70481 -12.57286 -12.48271 -12.32985 -12.15883 -12.11230 -11.99242 -11.87990 -11.31915 -11.19653 -11.08411 -11.01520 -10.77266 -10.37122 -9.73216 -9.22530 -9.15966 -8.58163 -6.28535 0.61701 0.98181 1.10839 1.23209 1.37409 1.47614 1.55534 1.60182 1.74555 2.11704 2.20714 2.79698 3.13433 3.39978 3.62388 3.70023 3.71180 3.95201 3.98222 4.04204 4.22330 4.24956 4.29692 4.38049 4.42460 4.48245 4.55445 4.59078 4.66167 4.69480 4.70187 4.80329 4.85480 4.96705 4.99100 5.10142 5.20415 5.23905 5.28113 5.36783 5.45191 5.55363 5.64774 5.77779 6.03579 6.16272 6.21856 6.36715 6.42031 6.74138 6.99853 7.12140 7.29190 7.48739 8.38221 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.012585 B = 0.003163 C = 0.002877 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2224.363316 B = 8850.478985 C = 9731.524012 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.827 5.827 2 C 0.036 3.964 3 Si 0.970 3.030 4 H -0.248 1.248 5 H -0.271 1.271 6 H -0.272 1.272 7 C -0.481 4.481 8 H 0.075 0.925 9 C 0.097 3.903 10 C -0.195 4.195 11 C -0.118 4.118 12 C -0.245 4.245 13 C -0.092 4.092 14 C -0.188 4.188 15 C -0.064 4.064 16 C 0.521 3.479 17 O -0.573 6.573 18 N -0.613 5.613 19 C 0.093 3.907 20 C -0.121 4.121 21 C -0.118 4.118 22 C 0.135 3.865 23 H 0.101 0.899 24 N -0.281 5.281 25 C -0.039 4.039 26 C -0.060 4.060 27 N -0.311 5.311 28 N -0.126 5.126 29 C 0.110 3.890 30 H 0.285 0.715 31 H 0.096 0.904 32 H 0.102 0.898 33 H 0.112 0.888 34 H 0.116 0.884 35 H 0.115 0.885 36 H 0.103 0.897 37 H 0.103 0.897 38 H 0.094 0.906 39 H 0.070 0.930 40 H 0.119 0.881 41 H 0.078 0.922 42 H 0.093 0.907 43 H 0.225 0.775 44 H 0.220 0.780 45 H 0.103 0.897 46 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.740 -2.596 -9.913 18.782 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.454 5.454 2 C -0.178 4.178 3 Si 0.792 3.208 4 H -0.171 1.171 5 H -0.195 1.195 6 H -0.197 1.197 7 C -0.511 4.511 8 H 0.093 0.907 9 C 0.095 3.905 10 C -0.215 4.215 11 C -0.137 4.137 12 C -0.264 4.264 13 C -0.110 4.110 14 C -0.190 4.190 15 C -0.103 4.103 16 C 0.311 3.689 17 O -0.451 6.451 18 N -0.348 5.348 19 C -0.028 4.028 20 C -0.160 4.160 21 C -0.157 4.157 22 C 0.033 3.967 23 H 0.119 0.881 24 N -0.074 5.074 25 C -0.191 4.191 26 C -0.217 4.217 27 N -0.176 5.176 28 N -0.105 5.105 29 C -0.014 4.014 30 H 0.096 0.904 31 H 0.114 0.886 32 H 0.121 0.879 33 H 0.131 0.869 34 H 0.134 0.866 35 H 0.132 0.868 36 H 0.121 0.879 37 H 0.122 0.878 38 H 0.112 0.888 39 H 0.088 0.912 40 H 0.137 0.863 41 H 0.096 0.904 42 H 0.112 0.888 43 H 0.242 0.758 44 H 0.236 0.764 45 H 0.121 0.879 46 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 15.491 -4.007 -9.225 18.470 hybrid contribution -0.277 1.831 0.648 1.962 sum 15.213 -2.176 -8.578 17.600 Atomic orbital electron populations 1.69877 1.08922 1.30284 1.36280 1.26681 0.95381 1.04233 0.91527 0.85426 0.78989 0.76374 0.80046 1.17146 1.19510 1.19680 1.19594 0.97160 0.91763 1.42545 0.90726 1.17736 0.91275 0.92925 0.88594 1.21321 1.00710 0.96705 1.02759 1.20940 0.99165 0.93495 1.00051 1.20708 1.01748 0.96669 1.07283 1.20742 0.95652 0.96740 0.97847 1.19556 1.00480 0.93295 1.05654 1.20292 0.88468 1.04712 0.96818 1.21284 0.85258 0.73925 0.88414 1.90683 1.87024 1.50257 1.17094 1.48114 1.03888 1.74457 1.08295 1.22209 1.03280 1.00169 0.77115 1.21910 0.93455 0.98339 1.02300 1.21929 0.99726 1.04768 0.89251 1.22245 0.78608 1.01667 0.94213 0.88112 1.47685 1.17461 1.05116 1.37178 1.24307 0.94568 0.95828 1.04377 1.24244 1.01316 0.91367 1.04797 1.75056 1.11928 1.14252 1.16332 1.78292 1.02596 1.14122 1.15483 1.21756 0.85790 0.97159 0.96729 0.90405 0.88622 0.87943 0.86947 0.86595 0.86753 0.87927 0.87830 0.88781 0.91171 0.86305 0.90353 0.88814 0.75842 0.76370 0.87927 0.91206 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -42.92 10.96 21.83 0.24 -42.68 16 2 C 0.04 1.79 5.16 85.26 0.44 2.23 16 3 Si 0.97 37.30 29.59 68.60 2.03 39.33 16 4 H -0.25 -8.72 7.11 99.48 0.71 -8.01 16 5 H -0.27 -9.96 7.11 99.48 0.71 -9.25 16 6 H -0.27 -10.67 7.11 99.48 0.71 -9.97 16 7 C -0.48 -24.89 8.14 23.46 0.19 -24.70 16 8 H 0.07 3.68 6.68 -2.91 -0.02 3.66 16 9 C 0.10 5.16 5.56 -21.29 -0.12 5.04 16 10 C -0.20 -10.70 8.69 22.73 0.20 -10.50 16 11 C -0.12 -5.80 10.02 22.22 0.22 -5.58 16 12 C -0.24 -11.06 10.05 22.46 0.23 -10.84 16 13 C -0.09 -4.02 9.66 22.22 0.21 -3.80 16 14 C -0.19 -8.65 4.43 -19.41 -0.09 -8.74 16 15 C -0.06 -2.20 3.53 29.10 0.10 -2.10 16 16 C 0.52 18.20 7.33 87.66 0.64 18.84 16 17 O -0.57 -26.44 15.45 -3.03 -0.05 -26.49 16 18 N -0.61 -14.35 2.97 -817.99 -2.43 -16.78 16 19 C 0.09 1.28 6.34 86.36 0.55 1.83 16 20 C -0.12 -1.14 6.08 30.67 0.19 -0.95 16 21 C -0.12 -1.34 5.49 30.62 0.17 -1.17 16 22 C 0.14 2.43 3.29 45.23 0.15 2.58 16 23 H 0.10 2.15 8.14 -2.38 -0.02 2.13 16 24 N -0.28 -5.88 3.26 -326.03 -1.06 -6.94 16 25 C -0.04 -0.64 10.68 83.49 0.89 0.25 16 26 C -0.06 -1.11 12.05 83.73 1.01 -0.10 16 27 N -0.31 -8.47 12.41 -58.26 -0.72 -9.20 16 28 N -0.13 -3.50 13.16 37.02 0.49 -3.01 16 29 C 0.11 2.32 5.48 86.52 0.47 2.79 16 30 H 0.29 13.51 8.30 -92.71 -0.77 12.74 16 31 H 0.10 5.49 6.21 -2.91 -0.02 5.48 16 32 H 0.10 4.50 8.06 -2.91 -0.02 4.48 16 33 H 0.11 4.37 8.06 -2.91 -0.02 4.34 16 34 H 0.12 4.24 8.06 -2.91 -0.02 4.22 16 35 H 0.11 3.03 7.60 -2.39 -0.02 3.01 16 36 H 0.10 3.46 6.86 -2.39 -0.02 3.44 16 37 H 0.10 1.37 5.93 -2.39 -0.01 1.36 16 38 H 0.09 0.96 8.14 -2.39 -0.02 0.94 16 39 H 0.07 0.78 8.14 -2.39 -0.02 0.77 16 40 H 0.12 0.50 8.14 -2.38 -0.02 0.48 16 41 H 0.08 0.95 8.14 -2.39 -0.02 0.93 16 42 H 0.09 0.78 8.14 -2.39 -0.02 0.76 16 43 H 0.23 1.77 7.18 -2.91 -0.02 1.75 16 44 H 0.22 2.37 8.06 -2.92 -0.02 2.34 16 45 H 0.10 1.58 6.94 -2.39 -0.02 1.56 16 46 H 0.07 2.00 7.00 -2.39 -0.02 1.99 16 Total: -1.00 -76.45 374.89 4.96 -71.50 By element: Atomic # 1 Polarization: 28.17 SS G_CDS: 1.00 Total: 29.17 kcal Atomic # 6 Polarization: -40.36 SS G_CDS: 5.46 Total: -34.90 kcal Atomic # 7 Polarization: -75.12 SS G_CDS: -3.48 Total: -78.61 kcal Atomic # 8 Polarization: -26.44 SS G_CDS: -0.05 Total: -26.49 kcal Atomic # 14 Polarization: 37.30 SS G_CDS: 2.03 Total: 39.33 kcal Total: -76.45 4.96 -71.50 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000819641270.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 136.788 kcal (2) G-P(sol) polarization free energy of solvation -76.455 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.333 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.959 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.496 kcal (6) G-S(sol) free energy of system = (1) + (5) 65.292 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds