Wall clock time and date at job start Sat Apr 11 2020 06:04:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30832 * 1 3 3 Si 1.86796 * 120.00080 * 2 1 4 4 H 1.48500 * 109.47182 * 275.40006 * 3 2 1 5 5 H 1.48501 * 109.47065 * 35.40130 * 3 2 1 6 6 H 1.48498 * 109.47103 * 155.40142 * 3 2 1 7 7 C 1.39947 * 119.99815 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00148 * 342.01663 * 7 2 1 9 9 C 1.41394 * 119.99482 * 162.01461 * 7 2 1 10 10 C 1.40734 * 120.24895 * 329.99515 * 9 7 2 11 11 C 1.37603 * 119.74337 * 180.32316 * 10 9 7 12 12 C 1.38651 * 120.24763 * 359.66146 * 11 10 9 13 13 C 1.38613 * 120.50401 * 0.02562 * 12 11 10 14 14 C 1.37631 * 120.24825 * 0.02851 * 13 12 11 15 15 C 1.50700 * 120.12894 * 179.97438 * 14 13 12 16 16 C 1.50701 * 109.47329 * 264.99958 * 15 14 13 17 17 O 1.21275 * 119.99719 * 359.97438 * 16 15 14 18 18 N 1.34772 * 120.00045 * 180.02562 * 16 15 14 19 19 C 1.46501 * 120.00156 * 179.97438 * 18 16 15 20 20 C 1.50700 * 109.47441 * 179.97438 * 19 18 16 21 21 C 1.35350 * 126.75237 * 95.01490 * 20 19 18 22 22 N 1.35317 * 106.17312 * 179.97438 * 21 20 19 23 23 C 1.46500 * 125.86351 * 180.02562 * 22 21 20 24 24 C 1.53772 * 113.61757 * 14.13770 * 23 22 21 25 25 C 1.53954 * 87.02071 * 220.05042 * 24 23 22 26 26 C 1.53781 * 87.11140 * 25.36255 * 25 24 23 27 27 N 1.28715 * 108.26359 * 0.02562 * 22 21 20 28 28 N 1.28629 * 110.18063 * 359.97438 * 27 22 21 29 29 H 0.96997 * 119.99793 * 359.97438 * 1 2 3 30 30 H 1.07995 * 120.12822 * 0.02562 * 10 9 7 31 31 H 1.07999 * 119.87090 * 179.68537 * 11 10 9 32 32 H 1.08002 * 119.74703 * 180.02562 * 12 11 10 33 33 H 1.08005 * 119.87205 * 180.02562 * 13 12 11 34 34 H 1.09000 * 109.47359 * 144.99704 * 15 14 13 35 35 H 1.09005 * 109.46947 * 25.00054 * 15 14 13 36 36 H 0.97003 * 120.00434 * 359.97438 * 18 16 15 37 37 H 1.09000 * 109.46993 * 59.99545 * 19 18 16 38 38 H 1.09005 * 109.47188 * 299.99972 * 19 18 16 39 39 H 1.07992 * 126.90986 * 0.02562 * 21 20 19 40 40 H 1.09003 * 112.84825 * 145.33865 * 23 22 21 41 41 H 1.09002 * 113.61689 * 334.56679 * 24 23 22 42 42 H 1.09000 * 113.61728 * 105.46919 * 24 23 22 43 43 H 1.09004 * 113.53834 * 270.81100 * 25 24 23 44 44 H 1.09004 * 113.74669 * 139.94215 * 25 24 23 45 45 H 1.09005 * 113.61259 * 220.09437 * 26 25 24 46 46 H 1.09000 * 113.61510 * 89.19207 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2423 1.6177 0.0000 4 1 2.3757 2.1123 -1.3938 5 1 1.5015 2.6170 0.8111 6 1 3.5923 1.4098 0.5828 7 6 2.0080 -1.2120 0.0005 8 1 1.5076 -2.1244 0.2897 9 6 3.3701 -1.2420 -0.3776 10 6 3.8682 -0.3113 -1.3083 11 6 5.1941 -0.3542 -1.6739 12 6 6.0399 -1.3051 -1.1237 13 6 5.5617 -2.2225 -0.2012 14 6 4.2390 -2.1990 0.1783 15 6 3.7218 -3.1981 1.1810 16 6 3.1187 -4.3727 0.4547 17 8 3.1093 -4.3960 -0.7578 18 7 2.5889 -5.3968 1.1525 19 6 2.0021 -6.5384 0.4464 20 6 1.4850 -7.5375 1.4491 21 6 0.2181 -7.6357 1.9151 22 7 0.2171 -8.6684 2.7895 23 6 -0.9405 -9.1507 3.5469 24 6 -2.2837 -8.6087 3.0307 25 6 -2.7018 -8.4670 4.5055 26 6 -1.2044 -8.3593 4.8388 27 7 1.4080 -9.1541 2.8414 28 7 2.1880 -8.5020 2.0535 29 1 -0.4850 0.8400 0.0004 30 1 3.2113 0.4306 -1.7376 31 1 5.5773 0.3558 -2.3918 32 1 7.0793 -1.3312 -1.4161 33 1 6.2297 -2.9586 0.2213 34 1 2.9618 -2.7272 1.8044 35 1 4.5442 -3.5421 1.8084 36 1 2.5961 -5.3780 2.1223 37 1 2.7619 -7.0097 -0.1770 38 1 1.1799 -6.1940 -0.1810 39 1 -0.6229 -7.0153 1.6431 40 1 -0.9319 -10.2311 3.6908 41 1 -2.1982 -7.6561 2.5077 42 1 -2.8685 -9.3446 2.4788 43 1 -3.1763 -9.3606 4.9112 44 1 -3.2628 -7.5568 4.7173 45 1 -0.9191 -8.8944 5.7446 46 1 -0.8233 -7.3385 4.8112 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000880563539.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:04:36 Heat of formation + Delta-G solvation = 100.767391 kcal Electronic energy + Delta-G solvation = -28294.746795 eV Core-core repulsion = 24379.922715 eV Total energy + Delta-G solvation = -3914.824080 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -43.52105 -39.41431 -39.13891 -37.54299 -34.85336 -33.53329 -33.17743 -31.93533 -31.22992 -30.25658 -27.75730 -26.53897 -26.45992 -25.73524 -24.62160 -22.51282 -21.56085 -21.29657 -20.46939 -20.09844 -19.36425 -18.07934 -17.29308 -16.71398 -16.42839 -16.06225 -15.74578 -15.31767 -15.23781 -14.83663 -14.28761 -14.09449 -13.90709 -13.63326 -13.37659 -13.18310 -13.08276 -12.76960 -12.75022 -12.57238 -12.11777 -12.08252 -11.85007 -11.74972 -11.40896 -11.34769 -11.23134 -11.04302 -10.85637 -10.75587 -10.67629 -10.22483 -10.19660 -9.65835 -9.61973 -9.50493 -9.07855 -9.03215 -8.65763 -7.52988 -7.43758 -6.89198 -4.42132 1.34973 2.04644 2.24052 2.64356 2.78294 3.16262 3.24248 3.36250 3.40161 3.53638 3.75491 3.85856 4.03346 4.04689 4.08927 4.20060 4.57785 4.59113 4.76778 4.84253 4.96409 5.05462 5.15317 5.22458 5.29431 5.35708 5.40729 5.58675 5.62333 5.77386 5.89393 5.95936 5.99304 6.10223 6.16716 6.25932 6.35852 6.37424 6.64927 6.78888 6.80087 7.01444 7.26874 7.49560 7.73016 7.81121 7.96113 8.00443 8.20986 8.33885 8.41664 8.74757 8.88260 8.90544 10.13126 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.013840 B = 0.002597 C = 0.002276 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2022.605271 B =10777.127410 C =12301.125971 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.813 5.813 2 C 0.085 3.915 3 Si 0.909 3.091 4 H -0.272 1.272 5 H -0.293 1.293 6 H -0.244 1.244 7 C -0.444 4.444 8 H 0.089 0.911 9 C 0.109 3.891 10 C -0.233 4.233 11 C -0.081 4.081 12 C -0.241 4.241 13 C -0.069 4.069 14 C -0.165 4.165 15 C -0.073 4.073 16 C 0.519 3.481 17 O -0.520 6.520 18 N -0.738 5.738 19 C 0.210 3.790 20 C -0.034 4.034 21 C -0.029 4.029 22 N -0.283 5.283 23 C 0.114 3.886 24 C -0.145 4.145 25 C -0.136 4.136 26 C -0.143 4.143 27 N -0.087 5.087 28 N -0.255 5.255 29 H 0.283 0.717 30 H 0.099 0.901 31 H 0.091 0.909 32 H 0.092 0.908 33 H 0.092 0.908 34 H 0.100 0.900 35 H 0.079 0.921 36 H 0.397 0.603 37 H 0.082 0.918 38 H 0.084 0.916 39 H 0.192 0.808 40 H 0.134 0.866 41 H 0.099 0.901 42 H 0.088 0.912 43 H 0.091 0.909 44 H 0.085 0.915 45 H 0.085 0.915 46 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.038 -14.662 10.434 19.323 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.437 5.437 2 C -0.133 4.133 3 Si 0.735 3.265 4 H -0.198 1.198 5 H -0.221 1.221 6 H -0.167 1.167 7 C -0.473 4.473 8 H 0.107 0.893 9 C 0.106 3.894 10 C -0.253 4.253 11 C -0.099 4.099 12 C -0.261 4.261 13 C -0.088 4.088 14 C -0.166 4.166 15 C -0.113 4.113 16 C 0.306 3.694 17 O -0.394 6.394 18 N -0.393 5.393 19 C 0.084 3.916 20 C -0.172 4.172 21 C -0.181 4.181 22 N -0.075 5.075 23 C 0.012 3.988 24 C -0.183 4.183 25 C -0.174 4.174 26 C -0.182 4.182 27 N -0.066 5.066 28 N -0.122 5.122 29 H 0.093 0.907 30 H 0.116 0.884 31 H 0.110 0.890 32 H 0.110 0.890 33 H 0.110 0.890 34 H 0.118 0.882 35 H 0.097 0.903 36 H 0.230 0.770 37 H 0.100 0.900 38 H 0.102 0.898 39 H 0.209 0.791 40 H 0.151 0.849 41 H 0.117 0.883 42 H 0.106 0.894 43 H 0.109 0.891 44 H 0.104 0.896 45 H 0.104 0.896 46 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -6.413 -15.689 10.177 19.770 hybrid contribution -0.681 1.401 -0.055 1.558 sum -7.094 -14.288 10.121 18.893 Atomic orbital electron populations 1.69708 1.08041 1.29980 1.35979 1.26137 0.94661 1.01611 0.90879 0.86360 0.81353 0.79949 0.78792 1.19791 1.22079 1.16678 1.19401 0.93008 0.95702 1.39151 0.89291 1.17489 0.92644 0.90136 0.89089 1.20994 0.95546 1.04622 1.04091 1.20595 0.93932 0.97291 0.98088 1.20340 0.98193 1.01785 1.05733 1.20449 0.94658 0.96897 0.96754 1.19080 0.93072 1.01491 1.02996 1.20289 1.00631 0.92554 0.97851 1.21085 0.77175 0.82790 0.88356 1.90694 1.55897 1.78748 1.14061 1.46084 1.63019 1.20207 1.10025 1.19277 0.98624 0.83232 0.90441 1.22018 0.91157 1.00296 1.03699 1.23396 1.01341 0.95833 0.97487 1.47454 1.09508 1.21714 1.28866 1.23541 0.81189 1.01085 0.92974 1.23478 0.93458 1.02996 0.98384 1.22748 0.95868 1.03782 0.94992 1.23419 0.96707 1.01483 0.96601 1.78301 0.88222 1.21044 1.19039 1.75115 1.25192 1.05761 1.06167 0.90696 0.88362 0.89041 0.89009 0.89023 0.88204 0.90274 0.77010 0.90029 0.89832 0.79103 0.84858 0.88292 0.89369 0.89060 0.89585 0.89612 0.88771 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -21.50 13.93 55.55 0.77 -20.72 16 2 C 0.09 2.23 5.41 -17.34 -0.09 2.13 16 3 Si 0.91 20.92 24.52 -169.99 -4.17 16.75 16 4 H -0.27 -6.18 6.71 56.52 0.38 -5.80 16 5 H -0.29 -6.47 7.11 56.52 0.40 -6.07 16 6 H -0.24 -5.72 6.85 56.52 0.39 -5.34 16 7 C -0.44 -11.90 8.56 -37.74 -0.32 -12.22 16 8 H 0.09 2.49 6.99 -52.48 -0.37 2.12 16 9 C 0.11 2.82 5.10 -106.82 -0.54 2.28 16 10 C -0.23 -5.88 7.17 -38.87 -0.28 -6.16 16 11 C -0.08 -1.85 10.02 -39.66 -0.40 -2.25 16 12 C -0.24 -5.30 10.05 -39.29 -0.39 -5.69 16 13 C -0.07 -1.53 9.66 -39.66 -0.38 -1.91 16 14 C -0.16 -3.84 4.43 -103.91 -0.46 -4.30 16 15 C -0.07 -1.42 5.19 -29.03 -0.15 -1.57 16 16 C 0.52 10.21 7.42 -10.99 -0.08 10.13 16 17 O -0.52 -12.54 16.03 5.56 0.09 -12.45 16 18 N -0.74 -11.40 5.55 -61.47 -0.34 -11.74 16 19 C 0.21 3.00 6.23 -5.19 -0.03 2.97 16 20 C -0.03 -0.43 6.62 -82.77 -0.55 -0.98 16 21 C -0.03 -0.30 10.71 -17.04 -0.18 -0.48 16 22 N -0.28 -2.82 3.53 -53.97 -0.19 -3.01 16 23 C 0.11 0.69 4.95 -67.12 -0.33 0.36 16 24 C -0.14 -0.61 7.45 -25.83 -0.19 -0.80 16 25 C -0.14 -0.46 8.09 -25.83 -0.21 -0.67 16 26 C -0.14 -0.73 7.88 -25.92 -0.20 -0.93 16 27 N -0.09 -1.16 13.16 60.35 0.79 -0.37 16 28 N -0.26 -3.77 12.41 33.29 0.41 -3.36 16 29 H 0.28 6.81 8.30 -40.82 -0.34 6.47 16 30 H 0.10 2.47 4.74 -52.49 -0.25 2.22 16 31 H 0.09 1.83 8.06 -52.49 -0.42 1.41 16 32 H 0.09 1.76 8.06 -52.49 -0.42 1.34 16 33 H 0.09 1.76 8.06 -52.48 -0.42 1.34 16 34 H 0.10 1.90 7.15 -51.93 -0.37 1.53 16 35 H 0.08 1.27 8.05 -51.93 -0.42 0.85 16 36 H 0.40 5.23 8.46 -40.82 -0.35 4.88 16 37 H 0.08 1.25 8.14 -51.93 -0.42 0.83 16 38 H 0.08 1.18 8.14 -51.93 -0.42 0.76 16 39 H 0.19 1.42 6.74 -52.49 -0.35 1.07 16 40 H 0.13 0.65 8.14 -51.93 -0.42 0.23 16 41 H 0.10 0.44 6.33 -51.93 -0.33 0.12 16 42 H 0.09 0.29 8.14 -51.93 -0.42 -0.13 16 43 H 0.09 0.20 8.14 -51.93 -0.42 -0.22 16 44 H 0.09 0.29 8.14 -51.93 -0.42 -0.13 16 45 H 0.09 0.38 8.14 -51.93 -0.42 -0.04 16 46 H 0.09 0.59 8.14 -51.93 -0.42 0.17 16 LS Contribution 380.82 15.07 5.74 5.74 Total: -1.00 -33.70 380.82 -7.95 -41.66 By element: Atomic # 1 Polarization: 13.85 SS G_CDS: -6.25 Total: 7.60 kcal Atomic # 6 Polarization: -15.29 SS G_CDS: -4.81 Total: -20.10 kcal Atomic # 7 Polarization: -40.65 SS G_CDS: 1.45 Total: -39.20 kcal Atomic # 8 Polarization: -12.54 SS G_CDS: 0.09 Total: -12.45 kcal Atomic # 14 Polarization: 20.92 SS G_CDS: -4.17 Total: 16.75 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -33.70 -7.95 -41.66 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000880563539.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 142.424 kcal (2) G-P(sol) polarization free energy of solvation -33.703 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 108.721 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.954 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.657 kcal (6) G-S(sol) free energy of system = (1) + (5) 100.767 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds