Wall clock time and date at job start Sat Apr 11 2020 06:04:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30832 * 1 3 3 Si 1.86796 * 120.00080 * 2 1 4 4 H 1.48500 * 109.47182 * 275.40006 * 3 2 1 5 5 H 1.48501 * 109.47065 * 35.40130 * 3 2 1 6 6 H 1.48498 * 109.47103 * 155.40142 * 3 2 1 7 7 C 1.39947 * 119.99815 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00148 * 342.01663 * 7 2 1 9 9 C 1.41394 * 119.99482 * 162.01461 * 7 2 1 10 10 C 1.40734 * 120.24895 * 329.99515 * 9 7 2 11 11 C 1.37603 * 119.74337 * 180.32316 * 10 9 7 12 12 C 1.38651 * 120.24763 * 359.66146 * 11 10 9 13 13 C 1.38613 * 120.50401 * 0.02562 * 12 11 10 14 14 C 1.37631 * 120.24825 * 0.02851 * 13 12 11 15 15 C 1.50700 * 120.12894 * 179.97438 * 14 13 12 16 16 C 1.50701 * 109.47329 * 264.99958 * 15 14 13 17 17 O 1.21275 * 119.99719 * 359.97438 * 16 15 14 18 18 N 1.34772 * 120.00045 * 180.02562 * 16 15 14 19 19 C 1.46501 * 120.00156 * 179.97438 * 18 16 15 20 20 C 1.50700 * 109.47441 * 179.97438 * 19 18 16 21 21 C 1.35350 * 126.75237 * 95.01490 * 20 19 18 22 22 N 1.35317 * 106.17312 * 179.97438 * 21 20 19 23 23 C 1.46500 * 125.86351 * 180.02562 * 22 21 20 24 24 C 1.53772 * 113.61757 * 14.13770 * 23 22 21 25 25 C 1.53954 * 87.02071 * 220.05042 * 24 23 22 26 26 C 1.53781 * 87.11140 * 25.36255 * 25 24 23 27 27 N 1.28715 * 108.26359 * 0.02562 * 22 21 20 28 28 N 1.28629 * 110.18063 * 359.97438 * 27 22 21 29 29 H 0.96997 * 119.99793 * 359.97438 * 1 2 3 30 30 H 1.07995 * 120.12822 * 0.02562 * 10 9 7 31 31 H 1.07999 * 119.87090 * 179.68537 * 11 10 9 32 32 H 1.08002 * 119.74703 * 180.02562 * 12 11 10 33 33 H 1.08005 * 119.87205 * 180.02562 * 13 12 11 34 34 H 1.09000 * 109.47359 * 144.99704 * 15 14 13 35 35 H 1.09005 * 109.46947 * 25.00054 * 15 14 13 36 36 H 0.97003 * 120.00434 * 359.97438 * 18 16 15 37 37 H 1.09000 * 109.46993 * 59.99545 * 19 18 16 38 38 H 1.09005 * 109.47188 * 299.99972 * 19 18 16 39 39 H 1.07992 * 126.90986 * 0.02562 * 21 20 19 40 40 H 1.09003 * 112.84825 * 145.33865 * 23 22 21 41 41 H 1.09002 * 113.61689 * 334.56679 * 24 23 22 42 42 H 1.09000 * 113.61728 * 105.46919 * 24 23 22 43 43 H 1.09004 * 113.53834 * 270.81100 * 25 24 23 44 44 H 1.09004 * 113.74669 * 139.94215 * 25 24 23 45 45 H 1.09005 * 113.61259 * 220.09437 * 26 25 24 46 46 H 1.09000 * 113.61510 * 89.19207 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2423 1.6177 0.0000 4 1 2.3757 2.1123 -1.3938 5 1 1.5015 2.6170 0.8111 6 1 3.5923 1.4098 0.5828 7 6 2.0080 -1.2120 0.0005 8 1 1.5076 -2.1244 0.2897 9 6 3.3701 -1.2420 -0.3776 10 6 3.8682 -0.3113 -1.3083 11 6 5.1941 -0.3542 -1.6739 12 6 6.0399 -1.3051 -1.1237 13 6 5.5617 -2.2225 -0.2012 14 6 4.2390 -2.1990 0.1783 15 6 3.7218 -3.1981 1.1810 16 6 3.1187 -4.3727 0.4547 17 8 3.1093 -4.3960 -0.7578 18 7 2.5889 -5.3968 1.1525 19 6 2.0021 -6.5384 0.4464 20 6 1.4850 -7.5375 1.4491 21 6 0.2181 -7.6357 1.9151 22 7 0.2171 -8.6684 2.7895 23 6 -0.9405 -9.1507 3.5469 24 6 -2.2837 -8.6087 3.0307 25 6 -2.7018 -8.4670 4.5055 26 6 -1.2044 -8.3593 4.8388 27 7 1.4080 -9.1541 2.8414 28 7 2.1880 -8.5020 2.0535 29 1 -0.4850 0.8400 0.0004 30 1 3.2113 0.4306 -1.7376 31 1 5.5773 0.3558 -2.3918 32 1 7.0793 -1.3312 -1.4161 33 1 6.2297 -2.9586 0.2213 34 1 2.9618 -2.7272 1.8044 35 1 4.5442 -3.5421 1.8084 36 1 2.5961 -5.3780 2.1223 37 1 2.7619 -7.0097 -0.1770 38 1 1.1799 -6.1940 -0.1810 39 1 -0.6229 -7.0153 1.6431 40 1 -0.9319 -10.2311 3.6908 41 1 -2.1982 -7.6561 2.5077 42 1 -2.8685 -9.3446 2.4788 43 1 -3.1763 -9.3606 4.9112 44 1 -3.2628 -7.5568 4.7173 45 1 -0.9191 -8.8944 5.7446 46 1 -0.8233 -7.3385 4.8112 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000880563539.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:04:35 Heat of formation + Delta-G solvation = 78.523916 kcal Electronic energy + Delta-G solvation = -28295.711344 eV Core-core repulsion = 24379.922715 eV Total energy + Delta-G solvation = -3915.788630 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -44.42216 -40.79795 -39.82015 -39.27334 -36.16244 -35.44491 -34.11587 -33.53947 -32.39872 -32.10311 -29.18961 -27.54156 -26.98062 -26.76790 -26.29139 -23.28573 -23.18098 -22.51831 -22.02333 -20.98598 -20.58051 -19.21518 -18.85687 -17.83703 -17.66702 -17.40275 -16.86823 -16.60554 -16.34254 -16.03188 -15.93813 -15.49196 -15.35572 -14.99091 -14.55085 -14.38932 -14.22767 -13.87763 -13.80549 -13.66917 -13.58010 -13.42292 -13.10243 -12.82819 -12.66022 -12.64513 -12.60519 -12.47137 -11.96701 -11.88212 -11.76042 -11.53022 -11.50035 -11.33969 -11.03014 -10.93858 -10.88553 -10.32508 -10.05499 -9.36472 -9.25358 -8.82865 -6.40021 0.48921 0.82210 0.93578 1.21055 1.30385 1.35334 1.42810 1.52139 1.84301 2.17345 2.50885 2.70199 3.02842 3.28623 3.35621 3.58668 3.65767 3.73331 3.75731 3.99468 4.10100 4.28899 4.31524 4.35675 4.43532 4.48436 4.59728 4.61493 4.64716 4.67987 4.77171 4.81054 4.89536 4.91579 4.97321 4.99472 5.01420 5.04787 5.20205 5.28554 5.41587 5.46092 5.63454 5.71251 5.90646 5.99172 6.09558 6.33360 6.49292 6.62721 6.84819 6.95463 7.38768 7.41006 8.24661 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.013840 B = 0.002597 C = 0.002276 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2022.605271 B =10777.127410 C =12301.125971 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.849 5.849 2 C 0.051 3.949 3 Si 0.959 3.041 4 H -0.269 1.269 5 H -0.278 1.278 6 H -0.252 1.252 7 C -0.468 4.468 8 H 0.062 0.938 9 C 0.083 3.917 10 C -0.257 4.257 11 C -0.092 4.092 12 C -0.232 4.232 13 C -0.080 4.080 14 C -0.171 4.171 15 C -0.073 4.073 16 C 0.520 3.480 17 O -0.572 6.572 18 N -0.720 5.720 19 C 0.215 3.785 20 C -0.049 4.049 21 C -0.013 4.013 22 N -0.270 5.270 23 C 0.098 3.902 24 C -0.141 4.141 25 C -0.124 4.124 26 C -0.144 4.144 27 N -0.108 5.108 28 N -0.289 5.289 29 H 0.290 0.710 30 H 0.091 0.909 31 H 0.121 0.879 32 H 0.127 0.873 33 H 0.124 0.876 34 H 0.098 0.902 35 H 0.117 0.883 36 H 0.409 0.591 37 H 0.069 0.931 38 H 0.084 0.916 39 H 0.220 0.780 40 H 0.147 0.853 41 H 0.097 0.903 42 H 0.101 0.899 43 H 0.108 0.892 44 H 0.089 0.911 45 H 0.091 0.909 46 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.548 -15.075 11.458 20.035 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.476 5.476 2 C -0.163 4.163 3 Si 0.784 3.216 4 H -0.195 1.195 5 H -0.205 1.205 6 H -0.176 1.176 7 C -0.497 4.497 8 H 0.080 0.920 9 C 0.081 3.919 10 C -0.276 4.276 11 C -0.110 4.110 12 C -0.251 4.251 13 C -0.098 4.098 14 C -0.173 4.173 15 C -0.113 4.113 16 C 0.308 3.692 17 O -0.450 6.450 18 N -0.374 5.374 19 C 0.090 3.910 20 C -0.188 4.188 21 C -0.166 4.166 22 N -0.063 5.063 23 C -0.002 4.002 24 C -0.179 4.179 25 C -0.162 4.162 26 C -0.183 4.183 27 N -0.087 5.087 28 N -0.155 5.155 29 H 0.101 0.899 30 H 0.109 0.891 31 H 0.138 0.862 32 H 0.144 0.856 33 H 0.142 0.858 34 H 0.116 0.884 35 H 0.135 0.865 36 H 0.245 0.755 37 H 0.087 0.913 38 H 0.102 0.898 39 H 0.237 0.763 40 H 0.164 0.836 41 H 0.115 0.885 42 H 0.120 0.880 43 H 0.126 0.874 44 H 0.107 0.893 45 H 0.110 0.890 46 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -5.937 -16.141 11.263 20.558 hybrid contribution -0.748 1.373 -0.346 1.601 sum -6.685 -14.768 10.917 19.544 Atomic orbital electron populations 1.69730 1.08911 1.31026 1.37953 1.26704 0.95220 1.03792 0.90570 0.85581 0.79904 0.77268 0.78874 1.19541 1.20501 1.17553 1.19332 0.93928 0.95192 1.41276 0.92004 1.17740 0.92700 0.91571 0.89889 1.21146 0.96826 1.04964 1.04671 1.20968 0.93176 0.98247 0.98587 1.20862 0.99731 1.00298 1.04166 1.20899 0.94617 0.97574 0.96734 1.19540 0.93610 1.01156 1.02991 1.20332 1.01870 0.91781 0.97301 1.21096 0.76946 0.83436 0.87699 1.90669 1.58272 1.79943 1.16097 1.45890 1.61408 1.19455 1.10613 1.19182 0.98187 0.82930 0.90725 1.21813 0.92212 1.00391 1.04369 1.23748 1.01095 0.95485 0.96252 1.47812 1.09495 1.20858 1.28116 1.24116 0.80504 1.02122 0.93465 1.23523 0.92128 1.03122 0.99144 1.22744 0.94589 1.04758 0.94110 1.23429 0.98085 1.00534 0.96270 1.78221 0.89416 1.21648 1.19416 1.75055 1.26528 1.06714 1.07213 0.89930 0.89107 0.86152 0.85551 0.85793 0.88367 0.86493 0.75497 0.91256 0.89791 0.76329 0.83557 0.88487 0.88031 0.87362 0.89267 0.89045 0.90127 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -46.27 13.93 21.83 0.30 -45.96 16 2 C 0.05 2.75 5.41 85.26 0.46 3.21 16 3 Si 0.96 43.54 24.52 68.60 1.68 45.23 16 4 H -0.27 -11.97 6.71 99.48 0.67 -11.30 16 5 H -0.28 -11.76 7.11 99.48 0.71 -11.05 16 6 H -0.25 -11.63 6.85 99.48 0.68 -10.94 16 7 C -0.47 -25.96 8.56 23.46 0.20 -25.75 16 8 H 0.06 3.65 6.99 -2.91 -0.02 3.63 16 9 C 0.08 4.36 5.10 -21.29 -0.11 4.25 16 10 C -0.26 -12.88 7.17 22.73 0.16 -12.72 16 11 C -0.09 -4.01 10.02 22.22 0.22 -3.79 16 12 C -0.23 -9.43 10.05 22.46 0.23 -9.21 16 13 C -0.08 -3.33 9.66 22.22 0.21 -3.11 16 14 C -0.17 -7.86 4.43 -19.41 -0.09 -7.95 16 15 C -0.07 -2.78 5.19 29.10 0.15 -2.63 16 16 C 0.52 20.58 7.42 87.66 0.65 21.23 16 17 O -0.57 -28.16 16.03 -3.01 -0.05 -28.21 16 18 N -0.72 -22.14 5.55 -466.79 -2.59 -24.73 16 19 C 0.22 6.23 6.23 85.63 0.53 6.76 16 20 C -0.05 -1.26 6.62 41.60 0.28 -0.98 16 21 C -0.01 -0.25 10.71 83.49 0.89 0.64 16 22 N -0.27 -5.08 3.53 -324.68 -1.15 -6.23 16 23 C 0.10 1.01 4.95 45.52 0.23 1.23 16 24 C -0.14 -0.85 7.45 31.18 0.23 -0.62 16 25 C -0.12 -0.53 8.09 31.18 0.25 -0.28 16 26 C -0.14 -1.22 7.88 31.12 0.25 -0.98 16 27 N -0.11 -2.84 13.16 37.02 0.49 -2.35 16 28 N -0.29 -8.54 12.41 -48.60 -0.60 -9.14 16 29 H 0.29 14.30 8.30 -92.71 -0.77 13.53 16 30 H 0.09 4.58 4.74 -2.91 -0.01 4.57 16 31 H 0.12 4.47 8.06 -2.91 -0.02 4.44 16 32 H 0.13 4.25 8.06 -2.91 -0.02 4.23 16 33 H 0.12 4.29 8.06 -2.91 -0.02 4.27 16 34 H 0.10 3.77 7.15 -2.39 -0.02 3.75 16 35 H 0.12 3.47 8.05 -2.38 -0.02 3.45 16 36 H 0.41 10.52 8.46 -92.71 -0.78 9.74 16 37 H 0.07 2.19 8.14 -2.39 -0.02 2.17 16 38 H 0.08 2.43 8.14 -2.38 -0.02 2.41 16 39 H 0.22 2.85 6.74 -2.91 -0.02 2.83 16 40 H 0.15 1.13 8.14 -2.39 -0.02 1.12 16 41 H 0.10 0.65 6.33 -2.39 -0.02 0.63 16 42 H 0.10 0.38 8.14 -2.39 -0.02 0.36 16 43 H 0.11 0.14 8.14 -2.38 -0.02 0.12 16 44 H 0.09 0.39 8.14 -2.38 -0.02 0.37 16 45 H 0.09 0.67 8.14 -2.38 -0.02 0.65 16 46 H 0.08 0.93 8.14 -2.39 -0.02 0.91 16 Total: -1.00 -75.25 380.82 3.01 -72.24 By element: Atomic # 1 Polarization: 29.69 SS G_CDS: 0.17 Total: 29.86 kcal Atomic # 6 Polarization: -35.45 SS G_CDS: 4.75 Total: -30.69 kcal Atomic # 7 Polarization: -84.87 SS G_CDS: -3.55 Total: -88.42 kcal Atomic # 8 Polarization: -28.16 SS G_CDS: -0.05 Total: -28.21 kcal Atomic # 14 Polarization: 43.54 SS G_CDS: 1.68 Total: 45.23 kcal Total: -75.25 3.01 -72.24 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000880563539.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 150.761 kcal (2) G-P(sol) polarization free energy of solvation -75.246 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 75.515 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.009 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.237 kcal (6) G-S(sol) free energy of system = (1) + (5) 78.524 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds