Wall clock time and date at job start Sat Apr 11 2020 06:04:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86801 * 120.00028 * 2 1 4 4 H 1.48502 * 109.47188 * 240.00346 * 3 2 1 5 5 H 1.48498 * 109.47107 * 0.02562 * 3 2 1 6 6 H 1.48499 * 109.46915 * 120.00007 * 3 2 1 7 7 C 1.37873 * 119.99812 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00291 * 186.11854 * 7 2 1 9 9 C 1.50703 * 119.99980 * 6.11078 * 7 2 1 10 10 H 1.09004 * 109.47098 * 25.84436 * 9 7 2 11 11 C 1.53002 * 109.46697 * 145.84261 * 9 7 2 12 12 C 1.50700 * 109.47374 * 294.99811 * 11 9 7 13 13 O 1.21287 * 119.99757 * 359.72757 * 12 11 9 14 14 N 1.34773 * 120.00408 * 180.02562 * 12 11 9 15 15 N 1.40096 * 120.00069 * 179.97438 * 14 12 11 16 16 N 1.29113 * 126.01026 * 359.69387 * 15 14 12 17 17 N 1.29021 * 110.25857 * 179.80139 * 16 15 14 18 18 C 1.32913 * 108.63519 * 0.38146 * 17 16 15 19 19 C 1.34402 * 126.00647 * 180.02562 * 15 14 12 20 20 C 1.50530 * 129.25317 * 0.19459 * 19 15 14 21 21 C 1.53428 * 108.32598 * 163.52199 * 20 19 15 22 22 C 1.53118 * 109.55456 * 49.70589 * 21 20 19 23 23 C 1.50595 * 129.15848 * 179.97438 * 18 17 16 24 24 C 1.50701 * 109.47446 * 265.83964 * 9 7 2 25 25 C 1.38234 * 120.00064 * 303.47050 * 24 9 7 26 26 C 1.38232 * 120.00078 * 179.78437 * 25 24 9 27 27 C 1.38238 * 119.99970 * 0.44134 * 26 25 24 28 28 C 1.38238 * 119.99828 * 359.81164 * 27 26 25 29 29 C 1.38234 * 120.00032 * 359.97438 * 28 27 26 30 30 H 0.97005 * 120.00042 * 359.97438 * 1 2 3 31 31 H 1.09007 * 109.46942 * 175.00051 * 11 9 7 32 32 H 1.09001 * 109.47485 * 55.00232 * 11 9 7 33 33 H 0.96998 * 119.99878 * 359.97438 * 14 12 11 34 34 H 1.09002 * 109.69721 * 283.22996 * 20 19 15 35 35 H 1.09005 * 109.69344 * 43.81391 * 20 19 15 36 36 H 1.08995 * 109.46083 * 289.68175 * 21 20 19 37 37 H 1.09005 * 109.46092 * 169.72504 * 21 20 19 38 38 H 1.08994 * 109.45292 * 169.89793 * 22 21 20 39 39 H 1.09002 * 109.45132 * 49.95322 * 22 21 20 40 40 H 1.08997 * 109.69209 * 283.13980 * 23 18 17 41 41 H 1.09002 * 109.69085 * 43.67881 * 23 18 17 42 42 H 1.08007 * 119.99688 * 359.97438 * 25 24 9 43 43 H 1.08000 * 120.00072 * 180.27054 * 26 25 24 44 44 H 1.07996 * 120.00001 * 179.83350 * 27 26 25 45 45 H 1.07997 * 120.00075 * 180.02562 * 28 27 26 46 46 H 1.07998 * 120.00140 * 180.02562 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6965 -1.2125 5 1 1.2842 2.7464 0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0798 -1.1968 0.0991 9 6 1.2573 -2.4954 -0.1400 10 1 0.3198 -2.3212 -0.6682 11 6 2.1100 -3.4908 -0.9293 12 6 2.2979 -2.9861 -2.3368 13 8 1.7948 -1.9362 -2.6767 14 7 3.0200 -3.7043 -3.2195 15 7 3.1941 -3.2353 -4.5281 16 7 2.7127 -2.1394 -5.0121 17 7 3.0637 -2.0039 -6.2463 18 6 3.7992 -3.0541 -6.5964 19 6 3.8865 -3.8502 -5.5023 20 6 4.6312 -5.1577 -5.4617 21 6 4.8920 -5.6093 -6.9047 22 6 5.5017 -4.4525 -7.7014 23 6 4.4423 -3.3653 -7.9221 24 6 0.9666 -3.0569 1.2279 25 6 2.0022 -3.2924 2.1128 26 6 1.7351 -3.8033 3.3691 27 6 0.4333 -4.0874 3.7373 28 6 -0.6018 -3.8569 2.8505 29 6 -0.3351 -3.3418 1.5957 30 1 -0.4850 0.8401 0.0004 31 1 1.6091 -4.4586 -0.9542 32 1 3.0825 -3.5974 -0.4487 33 1 3.4191 -4.5459 -2.9488 34 1 5.5798 -5.0244 -4.9415 35 1 4.0306 -5.9067 -4.9454 36 1 3.9521 -5.9121 -7.3659 37 1 5.5831 -6.4522 -6.9021 38 1 5.8508 -4.8205 -8.6661 39 1 6.3415 -4.0331 -7.1474 40 1 3.6875 -3.7256 -8.6209 41 1 4.9136 -2.4672 -8.3215 42 1 3.0197 -3.0742 1.8236 43 1 2.5438 -3.9831 4.0620 44 1 0.2249 -4.4891 4.7179 45 1 -1.6188 -4.0784 3.1383 46 1 -1.1438 -3.1613 0.9030 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000887220467.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:04:38 Heat of formation + Delta-G solvation = 119.211854 kcal Electronic energy + Delta-G solvation = -29091.993641 eV Core-core repulsion = 25177.969373 eV Total energy + Delta-G solvation = -3914.024268 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -43.28673 -39.36800 -38.31267 -37.20299 -35.47316 -34.09565 -32.06097 -31.45866 -30.24218 -30.09075 -30.00381 -28.72445 -25.80787 -24.36647 -23.45099 -22.89616 -22.24263 -21.66217 -20.22661 -19.90515 -19.13699 -18.40064 -16.85692 -16.62690 -16.42794 -15.76166 -15.27055 -14.71061 -14.46170 -14.44112 -14.21376 -14.15793 -13.97863 -13.95498 -13.56580 -13.48982 -12.73461 -12.52484 -12.41476 -12.12760 -12.05079 -11.72171 -11.56706 -11.38070 -11.33880 -11.14763 -10.99290 -10.83204 -10.81241 -10.64184 -10.48493 -10.33949 -10.16463 -9.59108 -9.37913 -9.13976 -8.94411 -8.76759 -8.41812 -8.11779 -7.70744 -6.00811 -4.02565 1.22130 1.70988 2.21400 2.26995 2.64558 3.12712 3.37631 3.42677 3.48291 3.71611 4.38333 4.47909 4.49172 4.54986 4.66203 4.68402 4.80995 4.99946 5.19632 5.21274 5.23832 5.32445 5.42445 5.54793 5.60314 5.61792 5.63936 5.69916 5.73112 5.81868 5.85617 5.90119 5.93483 6.00314 6.15509 6.25368 6.32988 6.38593 6.61211 6.80801 6.93530 7.04581 7.23701 7.25261 7.32702 7.43395 7.75191 7.86451 7.95247 8.24990 8.58773 8.70647 8.96982 9.61685 11.08891 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.013005 B = 0.003138 C = 0.002693 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2152.512210 B = 8921.882314 C =10394.569535 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.877 5.877 2 C 0.084 3.916 3 Si 0.887 3.113 4 H -0.275 1.275 5 H -0.287 1.287 6 H -0.279 1.279 7 C -0.505 4.505 8 H 0.052 0.948 9 C 0.081 3.919 10 H 0.076 0.924 11 C -0.102 4.102 12 C 0.501 3.499 13 O -0.423 6.423 14 N -0.527 5.527 15 N -0.071 5.071 16 N -0.042 5.042 17 N -0.270 5.270 18 C -0.013 4.013 19 C -0.052 4.052 20 C -0.043 4.043 21 C -0.113 4.113 22 C -0.120 4.120 23 C -0.029 4.029 24 C -0.022 4.022 25 C -0.115 4.115 26 C -0.131 4.131 27 C -0.153 4.153 28 C -0.127 4.127 29 C -0.117 4.117 30 H 0.262 0.738 31 H 0.078 0.922 32 H 0.088 0.912 33 H 0.427 0.573 34 H 0.083 0.917 35 H 0.078 0.922 36 H 0.070 0.930 37 H 0.076 0.924 38 H 0.075 0.925 39 H 0.068 0.932 40 H 0.081 0.919 41 H 0.084 0.916 42 H 0.114 0.886 43 H 0.106 0.894 44 H 0.105 0.895 45 H 0.106 0.894 46 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.492 -16.471 -7.791 20.545 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.513 5.513 2 C -0.121 4.121 3 Si 0.714 3.286 4 H -0.201 1.201 5 H -0.212 1.212 6 H -0.205 1.205 7 C -0.542 4.542 8 H 0.070 0.930 9 C 0.062 3.938 10 H 0.094 0.906 11 C -0.144 4.144 12 C 0.286 3.714 13 O -0.282 6.282 14 N -0.286 5.286 15 N 0.055 4.945 16 N -0.022 5.022 17 N -0.135 5.135 18 C -0.155 4.155 19 C -0.186 4.186 20 C -0.082 4.082 21 C -0.151 4.151 22 C -0.158 4.158 23 C -0.069 4.069 24 C -0.023 4.023 25 C -0.133 4.133 26 C -0.149 4.149 27 C -0.172 4.172 28 C -0.145 4.145 29 C -0.135 4.135 30 H 0.072 0.928 31 H 0.096 0.904 32 H 0.106 0.894 33 H 0.270 0.730 34 H 0.102 0.898 35 H 0.096 0.904 36 H 0.089 0.911 37 H 0.094 0.906 38 H 0.094 0.906 39 H 0.086 0.914 40 H 0.100 0.900 41 H 0.102 0.898 42 H 0.132 0.868 43 H 0.124 0.876 44 H 0.123 0.877 45 H 0.124 0.876 46 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges 8.003 -14.185 -7.643 17.991 hybrid contribution 1.242 -0.248 0.310 1.304 sum 9.245 -14.434 -7.333 18.643 Atomic orbital electron populations 1.69881 1.05991 1.26905 1.48478 1.24789 0.94670 0.98973 0.93675 0.86745 0.79901 0.83493 0.78419 1.20085 1.21234 1.20455 1.20630 0.92473 0.89497 1.51643 0.93003 1.17873 0.97447 0.91182 0.87344 0.90625 1.21898 1.03466 1.00902 0.88153 1.21990 0.77686 0.85252 0.86434 1.90953 1.42189 1.19571 1.75518 1.46855 1.59385 1.26683 0.95704 1.45885 1.31837 1.14627 1.02172 1.79425 1.18353 1.00434 1.04036 1.75014 1.13867 1.21028 1.03585 1.21441 1.03669 0.93306 0.97134 1.21615 1.06319 1.01628 0.89073 1.20134 0.98817 0.89988 0.99256 1.21559 1.01809 0.98146 0.93558 1.21639 0.98042 0.95369 1.00728 1.19922 0.97085 0.99303 0.90540 1.20616 0.92086 0.90821 0.98787 1.20944 0.99366 0.99520 0.93503 1.20978 0.96112 1.01193 0.96650 1.20818 0.93332 1.04017 0.99004 1.20994 0.98052 1.00871 0.94626 1.21090 0.97035 0.99152 0.96267 0.92816 0.90417 0.89389 0.73022 0.89823 0.90365 0.91124 0.90556 0.90647 0.91354 0.90017 0.89776 0.86841 0.87598 0.87734 0.87552 0.86742 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.55 12.87 55.43 0.71 -24.84 16 2 C 0.08 2.34 5.45 -17.82 -0.10 2.24 16 3 Si 0.89 22.51 29.54 -169.99 -5.02 17.49 16 4 H -0.28 -7.21 7.11 56.52 0.40 -6.81 16 5 H -0.29 -7.26 7.11 56.52 0.40 -6.85 16 6 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 7 C -0.51 -13.18 6.38 -34.44 -0.22 -13.40 16 8 H 0.05 1.34 7.82 -52.49 -0.41 0.93 16 9 C 0.08 1.82 1.67 -92.92 -0.16 1.67 16 10 H 0.08 1.98 6.97 -51.93 -0.36 1.62 16 11 C -0.10 -1.76 4.95 -27.88 -0.14 -1.90 16 12 C 0.50 9.68 7.69 -10.99 -0.08 9.60 16 13 O -0.42 -10.73 13.74 5.55 0.08 -10.65 16 14 N -0.53 -7.98 6.45 31.22 0.20 -7.78 16 15 N -0.07 -1.22 4.45 33.39 0.15 -1.07 16 16 N -0.04 -0.91 11.26 60.35 0.68 -0.23 16 17 N -0.27 -5.26 12.40 33.16 0.41 -4.84 16 18 C -0.01 -0.19 7.11 -83.12 -0.59 -0.78 16 19 C -0.05 -0.70 6.93 -82.50 -0.57 -1.27 16 20 C -0.04 -0.35 6.14 -27.74 -0.17 -0.52 16 21 C -0.11 -0.71 5.90 -26.45 -0.16 -0.87 16 22 C -0.12 -0.81 5.90 -26.47 -0.16 -0.97 16 23 C -0.03 -0.28 6.30 -27.73 -0.17 -0.46 16 24 C -0.02 -0.47 4.77 -104.62 -0.50 -0.97 16 25 C -0.12 -2.18 8.86 -39.59 -0.35 -2.53 16 26 C -0.13 -2.22 10.05 -39.58 -0.40 -2.62 16 27 C -0.15 -2.54 10.05 -39.58 -0.40 -2.93 16 28 C -0.13 -2.24 10.05 -39.58 -0.40 -2.64 16 29 C -0.12 -2.36 9.67 -39.58 -0.38 -2.74 16 30 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 31 H 0.08 1.09 8.14 -51.93 -0.42 0.66 16 32 H 0.09 1.32 7.78 -51.93 -0.40 0.92 16 33 H 0.43 4.20 8.67 -182.60 -1.58 2.62 16 34 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 35 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 36 H 0.07 0.46 8.12 -51.93 -0.42 0.04 16 37 H 0.08 0.33 8.14 -51.93 -0.42 -0.10 16 38 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 39 H 0.07 0.48 8.12 -51.93 -0.42 0.06 16 40 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 41 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 42 H 0.11 2.04 7.76 -52.48 -0.41 1.63 16 43 H 0.11 1.50 8.06 -52.49 -0.42 1.08 16 44 H 0.10 1.44 8.06 -52.49 -0.42 1.01 16 45 H 0.11 1.60 8.06 -52.49 -0.42 1.18 16 46 H 0.11 2.33 7.95 -52.49 -0.42 1.92 16 LS Contribution 382.56 15.07 5.77 5.77 Total: -1.00 -36.09 382.56 -9.76 -45.84 By element: Atomic # 1 Polarization: 9.18 SS G_CDS: -7.79 Total: 1.39 kcal Atomic # 6 Polarization: -16.13 SS G_CDS: -4.94 Total: -21.07 kcal Atomic # 7 Polarization: -40.92 SS G_CDS: 2.15 Total: -38.76 kcal Atomic # 8 Polarization: -10.73 SS G_CDS: 0.08 Total: -10.65 kcal Atomic # 14 Polarization: 22.51 SS G_CDS: -5.02 Total: 17.49 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -36.09 -9.76 -45.84 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000887220467.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 165.054 kcal (2) G-P(sol) polarization free energy of solvation -36.085 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 128.969 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.757 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.842 kcal (6) G-S(sol) free energy of system = (1) + (5) 119.212 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds