Wall clock time and date at job start Sat Apr 11 2020 06:04:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86801 * 120.00028 * 2 1 4 4 H 1.48502 * 109.47188 * 240.00346 * 3 2 1 5 5 H 1.48498 * 109.47107 * 0.02562 * 3 2 1 6 6 H 1.48499 * 109.46915 * 120.00007 * 3 2 1 7 7 C 1.37873 * 119.99812 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00291 * 186.11854 * 7 2 1 9 9 C 1.50703 * 119.99980 * 6.11078 * 7 2 1 10 10 H 1.09004 * 109.47098 * 25.84436 * 9 7 2 11 11 C 1.53002 * 109.46697 * 145.84261 * 9 7 2 12 12 C 1.50700 * 109.47374 * 294.99811 * 11 9 7 13 13 O 1.21287 * 119.99757 * 359.72757 * 12 11 9 14 14 N 1.34773 * 120.00408 * 180.02562 * 12 11 9 15 15 N 1.40096 * 120.00069 * 179.97438 * 14 12 11 16 16 N 1.29113 * 126.01026 * 359.69387 * 15 14 12 17 17 N 1.29021 * 110.25857 * 179.80139 * 16 15 14 18 18 C 1.32913 * 108.63519 * 0.38146 * 17 16 15 19 19 C 1.34402 * 126.00647 * 180.02562 * 15 14 12 20 20 C 1.50530 * 129.25317 * 0.19459 * 19 15 14 21 21 C 1.53428 * 108.32598 * 163.52199 * 20 19 15 22 22 C 1.53118 * 109.55456 * 49.70589 * 21 20 19 23 23 C 1.50595 * 129.15848 * 179.97438 * 18 17 16 24 24 C 1.50701 * 109.47446 * 265.83964 * 9 7 2 25 25 C 1.38234 * 120.00064 * 303.47050 * 24 9 7 26 26 C 1.38232 * 120.00078 * 179.78437 * 25 24 9 27 27 C 1.38238 * 119.99970 * 0.44134 * 26 25 24 28 28 C 1.38238 * 119.99828 * 359.81164 * 27 26 25 29 29 C 1.38234 * 120.00032 * 359.97438 * 28 27 26 30 30 H 0.97005 * 120.00042 * 359.97438 * 1 2 3 31 31 H 1.09007 * 109.46942 * 175.00051 * 11 9 7 32 32 H 1.09001 * 109.47485 * 55.00232 * 11 9 7 33 33 H 0.96998 * 119.99878 * 359.97438 * 14 12 11 34 34 H 1.09002 * 109.69721 * 283.22996 * 20 19 15 35 35 H 1.09005 * 109.69344 * 43.81391 * 20 19 15 36 36 H 1.08995 * 109.46083 * 289.68175 * 21 20 19 37 37 H 1.09005 * 109.46092 * 169.72504 * 21 20 19 38 38 H 1.08994 * 109.45292 * 169.89793 * 22 21 20 39 39 H 1.09002 * 109.45132 * 49.95322 * 22 21 20 40 40 H 1.08997 * 109.69209 * 283.13980 * 23 18 17 41 41 H 1.09002 * 109.69085 * 43.67881 * 23 18 17 42 42 H 1.08007 * 119.99688 * 359.97438 * 25 24 9 43 43 H 1.08000 * 120.00072 * 180.27054 * 26 25 24 44 44 H 1.07996 * 120.00001 * 179.83350 * 27 26 25 45 45 H 1.07997 * 120.00075 * 180.02562 * 28 27 26 46 46 H 1.07998 * 120.00140 * 180.02562 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6965 -1.2125 5 1 1.2842 2.7464 0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0798 -1.1968 0.0991 9 6 1.2573 -2.4954 -0.1400 10 1 0.3198 -2.3212 -0.6682 11 6 2.1100 -3.4908 -0.9293 12 6 2.2979 -2.9861 -2.3368 13 8 1.7948 -1.9362 -2.6767 14 7 3.0200 -3.7043 -3.2195 15 7 3.1941 -3.2353 -4.5281 16 7 2.7127 -2.1394 -5.0121 17 7 3.0637 -2.0039 -6.2463 18 6 3.7992 -3.0541 -6.5964 19 6 3.8865 -3.8502 -5.5023 20 6 4.6312 -5.1577 -5.4617 21 6 4.8920 -5.6093 -6.9047 22 6 5.5017 -4.4525 -7.7014 23 6 4.4423 -3.3653 -7.9221 24 6 0.9666 -3.0569 1.2279 25 6 2.0022 -3.2924 2.1128 26 6 1.7351 -3.8033 3.3691 27 6 0.4333 -4.0874 3.7373 28 6 -0.6018 -3.8569 2.8505 29 6 -0.3351 -3.3418 1.5957 30 1 -0.4850 0.8401 0.0004 31 1 1.6091 -4.4586 -0.9542 32 1 3.0825 -3.5974 -0.4487 33 1 3.4191 -4.5459 -2.9488 34 1 5.5798 -5.0244 -4.9415 35 1 4.0306 -5.9067 -4.9454 36 1 3.9521 -5.9121 -7.3659 37 1 5.5831 -6.4522 -6.9021 38 1 5.8508 -4.8205 -8.6661 39 1 6.3415 -4.0331 -7.1474 40 1 3.6875 -3.7256 -8.6209 41 1 4.9136 -2.4672 -8.3215 42 1 3.0197 -3.0742 1.8236 43 1 2.5438 -3.9831 4.0620 44 1 0.2249 -4.4891 4.7179 45 1 -1.6188 -4.0784 3.1383 46 1 -1.1438 -3.1613 0.9030 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000887220467.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:04:38 Heat of formation + Delta-G solvation = 95.273871 kcal Electronic energy + Delta-G solvation = -29093.031670 eV Core-core repulsion = 25177.969373 eV Total energy + Delta-G solvation = -3915.062297 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -44.52731 -40.89581 -39.75093 -37.96166 -36.87825 -35.82407 -33.64894 -32.96521 -31.48802 -31.24710 -31.00340 -30.09244 -27.63576 -25.43749 -24.86940 -23.87502 -23.53909 -23.07655 -21.53358 -21.14563 -20.39407 -19.60874 -18.57734 -18.01621 -17.94059 -17.14811 -16.56842 -16.25756 -15.92327 -15.65079 -15.53599 -15.36287 -15.04092 -14.82080 -14.69435 -14.42034 -14.37643 -14.01165 -13.72047 -13.64951 -13.22961 -13.14761 -12.89211 -12.69185 -12.62222 -12.57618 -12.48434 -12.31429 -11.83709 -11.81231 -11.73627 -11.62311 -11.39675 -11.35487 -11.05919 -10.93972 -10.48314 -10.24843 -9.94224 -9.52480 -9.20554 -8.10731 -6.12993 -0.00201 0.48943 0.79571 0.85109 1.29419 1.36345 1.39538 1.41616 1.64261 2.40974 2.66932 3.16935 3.26742 3.36735 3.64733 3.78449 3.82740 4.03136 4.13709 4.21915 4.32830 4.35485 4.39065 4.45158 4.51762 4.55637 4.58800 4.60186 4.69213 4.85950 4.91597 4.96858 5.04147 5.08058 5.15898 5.21511 5.23011 5.36730 5.38548 5.49656 5.50855 5.59622 5.73459 5.77895 5.85877 5.93409 6.05468 6.13004 6.37151 6.46498 6.95680 7.17265 7.42191 7.51481 8.98443 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.013005 B = 0.003138 C = 0.002693 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2152.512210 B = 8921.882314 C =10394.569535 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.913 5.913 2 C 0.029 3.971 3 Si 0.927 3.073 4 H -0.293 1.293 5 H -0.290 1.290 6 H -0.260 1.260 7 C -0.492 4.492 8 H 0.052 0.948 9 C 0.082 3.918 10 H 0.026 0.974 11 C -0.093 4.093 12 C 0.504 3.496 13 O -0.495 6.495 14 N -0.505 5.505 15 N -0.083 5.083 16 N -0.121 5.121 17 N -0.306 5.306 18 C -0.026 4.026 19 C -0.030 4.030 20 C -0.046 4.046 21 C -0.110 4.110 22 C -0.115 4.115 23 C -0.032 4.032 24 C -0.043 4.043 25 C -0.124 4.124 26 C -0.126 4.126 27 C -0.146 4.146 28 C -0.129 4.129 29 C -0.142 4.142 30 H 0.254 0.746 31 H 0.117 0.883 32 H 0.120 0.880 33 H 0.454 0.546 34 H 0.105 0.895 35 H 0.102 0.898 36 H 0.068 0.932 37 H 0.110 0.890 38 H 0.103 0.897 39 H 0.067 0.933 40 H 0.092 0.908 41 H 0.083 0.917 42 H 0.121 0.879 43 H 0.141 0.859 44 H 0.142 0.858 45 H 0.129 0.871 46 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.499 -20.677 -6.596 25.046 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.552 5.552 2 C -0.170 4.170 3 Si 0.755 3.245 4 H -0.220 1.220 5 H -0.216 1.216 6 H -0.185 1.185 7 C -0.530 4.530 8 H 0.070 0.930 9 C 0.063 3.937 10 H 0.044 0.956 11 C -0.135 4.135 12 C 0.291 3.709 13 O -0.360 6.360 14 N -0.266 5.266 15 N 0.043 4.957 16 N -0.100 5.100 17 N -0.170 5.170 18 C -0.170 4.170 19 C -0.166 4.166 20 C -0.085 4.085 21 C -0.148 4.148 22 C -0.153 4.153 23 C -0.071 4.071 24 C -0.044 4.044 25 C -0.142 4.142 26 C -0.144 4.144 27 C -0.164 4.164 28 C -0.147 4.147 29 C -0.160 4.160 30 H 0.063 0.937 31 H 0.135 0.865 32 H 0.138 0.862 33 H 0.302 0.698 34 H 0.123 0.877 35 H 0.120 0.880 36 H 0.087 0.913 37 H 0.128 0.872 38 H 0.121 0.879 39 H 0.086 0.914 40 H 0.110 0.890 41 H 0.101 0.899 42 H 0.139 0.861 43 H 0.159 0.841 44 H 0.160 0.840 45 H 0.147 0.853 46 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 11.057 -18.444 -6.430 22.445 hybrid contribution 0.388 0.872 -0.133 0.963 sum 11.445 -17.572 -6.563 21.974 Atomic orbital electron populations 1.70013 1.07014 1.26472 1.51716 1.25402 0.95206 1.01486 0.94920 0.86106 0.78897 0.81434 0.78111 1.21963 1.21566 1.18474 1.21008 0.92509 0.90979 1.48518 0.93010 1.17646 0.95654 0.91479 0.88968 0.95587 1.21785 1.04474 1.00822 0.86410 1.22324 0.76790 0.84372 0.87420 1.90947 1.45200 1.22791 1.77057 1.46305 1.58371 1.26941 0.94974 1.45987 1.32259 1.14566 1.02920 1.79388 1.21905 1.03344 1.05336 1.74941 1.15272 1.23358 1.03475 1.22431 1.02810 0.92160 0.99554 1.22664 1.03962 1.02705 0.87282 1.20557 0.99229 0.87215 1.01479 1.21626 1.02606 0.98750 0.91787 1.21671 0.96709 0.94429 1.02468 1.20200 0.98061 1.00662 0.88158 1.20394 0.93123 0.92881 0.98012 1.21066 0.99037 0.99924 0.94187 1.21377 0.97459 0.99409 0.96109 1.21270 0.92710 1.02369 1.00056 1.21269 0.99926 0.99944 0.93579 1.21096 0.96422 1.00974 0.97532 0.93747 0.86494 0.86203 0.69754 0.87656 0.88012 0.91277 0.87190 0.87855 0.91424 0.88964 0.89873 0.86069 0.84081 0.84032 0.85277 0.88921 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -56.65 12.87 21.45 0.28 -56.37 16 2 C 0.03 1.72 5.45 84.65 0.46 2.18 16 3 Si 0.93 48.07 29.54 68.60 2.03 50.10 16 4 H -0.29 -15.85 7.11 99.48 0.71 -15.15 16 5 H -0.29 -15.00 7.11 99.48 0.71 -14.29 16 6 H -0.26 -12.52 7.11 99.48 0.71 -11.82 16 7 C -0.49 -26.49 6.38 25.60 0.16 -26.33 16 8 H 0.05 2.71 7.82 -2.91 -0.02 2.68 16 9 C 0.08 3.82 1.67 -12.28 -0.02 3.79 16 10 H 0.03 1.46 6.97 -2.39 -0.02 1.44 16 11 C -0.09 -3.16 4.95 29.85 0.15 -3.01 16 12 C 0.50 19.93 7.69 87.66 0.67 20.60 16 13 O -0.49 -26.83 13.74 -3.05 -0.04 -26.87 16 14 N -0.50 -14.97 6.45 -173.53 -1.12 -16.09 16 15 N -0.08 -2.90 4.45 -48.27 -0.22 -3.12 16 16 N -0.12 -5.55 11.26 37.02 0.42 -5.14 16 17 N -0.31 -12.63 12.40 -48.99 -0.61 -13.24 16 18 C -0.03 -0.76 7.11 41.75 0.30 -0.47 16 19 C -0.03 -0.79 6.93 41.50 0.29 -0.50 16 20 C -0.05 -0.56 6.14 29.94 0.18 -0.37 16 21 C -0.11 -0.89 5.90 30.78 0.18 -0.70 16 22 C -0.11 -1.15 5.90 30.77 0.18 -0.96 16 23 C -0.03 -0.57 6.30 29.95 0.19 -0.38 16 24 C -0.04 -1.81 4.77 -19.87 -0.09 -1.90 16 25 C -0.12 -4.41 8.86 22.27 0.20 -4.22 16 26 C -0.13 -3.75 10.05 22.27 0.22 -3.52 16 27 C -0.15 -4.25 10.05 22.27 0.22 -4.02 16 28 C -0.13 -4.30 10.05 22.27 0.22 -4.08 16 29 C -0.14 -5.79 9.67 22.27 0.22 -5.57 16 30 H 0.25 15.42 8.31 -92.70 -0.77 14.65 16 31 H 0.12 3.04 8.14 -2.38 -0.02 3.02 16 32 H 0.12 3.30 7.78 -2.39 -0.02 3.29 16 33 H 0.45 7.73 8.67 -213.33 -1.85 5.88 16 34 H 0.11 0.94 8.14 -2.39 -0.02 0.92 16 35 H 0.10 0.84 8.14 -2.38 -0.02 0.82 16 36 H 0.07 0.62 8.12 -2.39 -0.02 0.61 16 37 H 0.11 0.27 8.14 -2.38 -0.02 0.25 16 38 H 0.10 0.52 8.14 -2.39 -0.02 0.50 16 39 H 0.07 0.72 8.12 -2.39 -0.02 0.70 16 40 H 0.09 1.46 8.14 -2.39 -0.02 1.44 16 41 H 0.08 1.50 8.14 -2.39 -0.02 1.48 16 42 H 0.12 4.04 7.76 -2.91 -0.02 4.01 16 43 H 0.14 3.22 8.06 -2.91 -0.02 3.20 16 44 H 0.14 3.09 8.06 -2.91 -0.02 3.07 16 45 H 0.13 3.61 8.06 -2.91 -0.02 3.59 16 46 H 0.09 4.06 7.95 -2.91 -0.02 4.04 16 Total: -1.00 -89.49 382.56 3.62 -85.87 By element: Atomic # 1 Polarization: 15.17 SS G_CDS: -0.85 Total: 14.33 kcal Atomic # 6 Polarization: -33.20 SS G_CDS: 3.73 Total: -29.47 kcal Atomic # 7 Polarization: -92.71 SS G_CDS: -1.25 Total: -93.96 kcal Atomic # 8 Polarization: -26.83 SS G_CDS: -0.04 Total: -26.87 kcal Atomic # 14 Polarization: 48.07 SS G_CDS: 2.03 Total: 50.10 kcal Total: -89.49 3.62 -85.87 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000887220467.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 181.144 kcal (2) G-P(sol) polarization free energy of solvation -89.491 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 91.653 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.621 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.870 kcal (6) G-S(sol) free energy of system = (1) + (5) 95.274 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds