Wall clock time and date at job start Sat Apr 11 2020 06:04:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86801 * 119.99966 * 2 1 4 4 H 1.48502 * 109.47233 * 240.00109 * 3 2 1 5 5 H 1.48502 * 109.47256 * 0.02562 * 3 2 1 6 6 H 1.48497 * 109.47036 * 120.00132 * 3 2 1 7 7 C 1.37877 * 120.00034 * 179.97438 * 2 1 3 8 8 H 1.07996 * 119.99669 * 184.93996 * 7 2 1 9 9 C 1.50702 * 119.99848 * 4.94156 * 7 2 1 10 10 H 1.08998 * 109.47087 * 329.58517 * 9 7 2 11 11 C 1.53000 * 109.47208 * 209.58190 * 9 7 2 12 12 C 1.50710 * 109.46692 * 65.00156 * 11 9 7 13 13 O 1.21278 * 120.00001 * 0.02562 * 12 11 9 14 14 N 1.34776 * 119.99523 * 180.02562 * 12 11 9 15 15 N 1.40097 * 119.99611 * 180.02562 * 14 12 11 16 16 N 1.29107 * 126.00760 * 359.68550 * 15 14 12 17 17 N 1.29022 * 110.25458 * 179.80311 * 16 15 14 18 18 C 1.32902 * 108.64020 * 0.39255 * 17 16 15 19 19 C 1.34403 * 126.00728 * 180.02562 * 15 14 12 20 20 C 1.50538 * 129.25029 * 0.19026 * 19 15 14 21 21 C 1.53437 * 108.32096 * 163.52271 * 20 19 15 22 22 C 1.53106 * 109.55507 * 49.70405 * 21 20 19 23 23 C 1.50597 * 129.16359 * 179.97438 * 18 17 16 24 24 C 1.50696 * 109.47037 * 89.58142 * 9 7 2 25 25 C 1.38239 * 120.00183 * 56.77195 * 24 9 7 26 26 C 1.38229 * 120.00496 * 179.78427 * 25 24 9 27 27 C 1.38242 * 119.99689 * 0.44232 * 26 25 24 28 28 C 1.38234 * 120.00078 * 359.80954 * 27 26 25 29 29 C 1.38234 * 120.00245 * 237.04033 * 24 9 7 30 30 H 0.97002 * 119.99831 * 0.02562 * 1 2 3 31 31 H 1.08995 * 109.47199 * 184.99467 * 11 9 7 32 32 H 1.08994 * 109.47195 * 305.00626 * 11 9 7 33 33 H 0.97003 * 120.00288 * 359.97438 * 14 12 11 34 34 H 1.08992 * 109.69260 * 283.22922 * 20 19 15 35 35 H 1.08997 * 109.69249 * 43.81518 * 20 19 15 36 36 H 1.09003 * 109.45553 * 289.67713 * 21 20 19 37 37 H 1.09007 * 109.45361 * 169.73152 * 21 20 19 38 38 H 1.08999 * 109.45681 * 169.88650 * 22 21 20 39 39 H 1.09002 * 109.45373 * 49.95557 * 22 21 20 40 40 H 1.09004 * 109.68967 * 283.12901 * 23 18 17 41 41 H 1.08997 * 109.69413 * 43.66816 * 23 18 17 42 42 H 1.08004 * 119.99189 * 359.97438 * 25 24 9 43 43 H 1.07994 * 120.00489 * 180.26973 * 26 25 24 44 44 H 1.08000 * 119.99535 * 179.82986 * 27 26 25 45 45 H 1.07997 * 120.00147 * 180.02562 * 28 27 26 46 46 H 1.07997 * 120.00218 * 359.97438 * 29 24 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.1029 1.6965 -1.2125 5 1 1.2842 2.7465 0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0815 -1.1957 0.0811 9 6 1.2552 -2.4968 -0.1113 10 1 0.2697 -2.3891 0.3417 11 6 2.0329 -3.5964 0.6146 12 6 2.0796 -3.2887 2.0892 13 8 1.5434 -2.2887 2.5173 14 7 2.7174 -4.1248 2.9321 15 7 2.7605 -3.8391 4.3030 16 7 2.2365 -2.8102 4.8806 17 7 2.4547 -2.8522 6.1516 18 6 3.1572 -3.9464 6.4261 19 6 3.3600 -4.5846 5.2470 20 6 4.1217 -5.8747 5.1006 21 6 4.9428 -6.0977 6.3775 22 6 4.0419 -5.9231 7.6030 23 6 3.6605 -4.4451 7.7550 24 6 1.1025 -2.8652 -1.5645 25 6 2.2210 -2.9908 -2.3671 26 6 2.0813 -3.3331 -3.6990 27 6 0.8223 -3.5410 -4.2307 28 6 -0.2966 -3.4103 -3.4296 29 6 -0.1565 -3.0722 -2.0965 30 1 -0.4850 0.8401 -0.0004 31 1 1.5377 -4.5548 0.4591 32 1 3.0481 -3.6438 0.2210 33 1 3.1460 -4.9249 2.5897 34 1 3.4232 -6.7002 4.9642 35 1 4.7890 -5.8117 4.2411 36 1 5.7554 -5.3723 6.4179 37 1 5.3565 -7.1062 6.3716 38 1 4.5738 -6.2545 8.4948 39 1 3.1382 -6.5195 7.4772 40 1 4.5362 -3.8697 8.0554 41 1 2.8778 -4.3418 8.5064 42 1 3.2044 -2.8243 -1.9525 43 1 2.9554 -3.4354 -4.3249 44 1 0.7130 -3.8057 -5.2721 45 1 -1.2801 -3.5731 -3.8449 46 1 -1.0307 -2.9703 -1.4706 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000887220468.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:04:41 Heat of formation + Delta-G solvation = 119.509378 kcal Electronic energy + Delta-G solvation = -29072.134560 eV Core-core repulsion = 25158.123193 eV Total energy + Delta-G solvation = -3914.011367 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -43.28330 -39.36615 -38.32198 -37.19950 -35.46832 -34.09955 -32.05556 -31.45382 -30.23954 -30.10042 -30.00134 -28.73232 -25.80677 -24.36396 -23.44945 -22.89193 -22.24373 -21.66623 -20.22487 -19.91178 -19.13284 -18.39592 -16.80984 -16.74462 -16.34058 -15.78530 -15.27062 -14.68762 -14.49487 -14.41511 -14.21699 -14.16460 -14.00133 -13.92848 -13.56454 -13.48470 -12.73740 -12.52646 -12.41148 -12.15627 -12.05280 -11.72901 -11.56709 -11.37262 -11.33029 -11.14548 -10.95384 -10.88592 -10.80710 -10.64530 -10.48060 -10.35452 -10.15615 -9.58517 -9.38808 -9.14601 -8.94132 -8.76423 -8.40522 -8.12963 -7.73285 -5.99948 -4.01519 1.22584 1.71440 2.20242 2.25546 2.65068 3.13397 3.37403 3.41631 3.44786 3.71979 4.38603 4.47382 4.49295 4.55258 4.64916 4.68792 4.81243 5.00165 5.19674 5.21416 5.24393 5.32651 5.42202 5.55373 5.59388 5.61536 5.63641 5.70215 5.72646 5.81689 5.85365 5.89637 5.93795 6.00467 6.15315 6.25743 6.31835 6.37825 6.59565 6.79993 6.92369 7.05035 7.22897 7.25108 7.32930 7.42838 7.77272 7.85084 7.95286 8.25026 8.59469 8.71170 8.97289 9.61612 11.09667 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.013213 B = 0.003086 C = 0.002678 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2118.651570 B = 9070.860556 C =10454.771482 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.876 5.876 2 C 0.081 3.919 3 Si 0.886 3.114 4 H -0.278 1.278 5 H -0.287 1.287 6 H -0.277 1.277 7 C -0.504 4.504 8 H 0.052 0.948 9 C 0.080 3.920 10 H 0.076 0.924 11 C -0.101 4.101 12 C 0.500 3.500 13 O -0.421 6.421 14 N -0.527 5.527 15 N -0.070 5.070 16 N -0.042 5.042 17 N -0.270 5.270 18 C -0.013 4.013 19 C -0.052 4.052 20 C -0.042 4.042 21 C -0.113 4.113 22 C -0.119 4.119 23 C -0.029 4.029 24 C -0.024 4.024 25 C -0.114 4.114 26 C -0.132 4.132 27 C -0.153 4.153 28 C -0.128 4.128 29 C -0.117 4.117 30 H 0.262 0.738 31 H 0.078 0.922 32 H 0.088 0.912 33 H 0.427 0.573 34 H 0.083 0.917 35 H 0.078 0.922 36 H 0.070 0.930 37 H 0.076 0.924 38 H 0.075 0.925 39 H 0.068 0.932 40 H 0.081 0.919 41 H 0.084 0.916 42 H 0.114 0.886 43 H 0.106 0.894 44 H 0.105 0.895 45 H 0.107 0.893 46 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.788 -17.451 6.210 20.502 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.512 5.512 2 C -0.123 4.123 3 Si 0.714 3.286 4 H -0.203 1.203 5 H -0.212 1.212 6 H -0.202 1.202 7 C -0.541 4.541 8 H 0.070 0.930 9 C 0.060 3.940 10 H 0.095 0.905 11 C -0.143 4.143 12 C 0.285 3.715 13 O -0.280 6.280 14 N -0.287 5.287 15 N 0.055 4.945 16 N -0.022 5.022 17 N -0.135 5.135 18 C -0.155 4.155 19 C -0.187 4.187 20 C -0.082 4.082 21 C -0.151 4.151 22 C -0.157 4.157 23 C -0.069 4.069 24 C -0.025 4.025 25 C -0.132 4.132 26 C -0.150 4.150 27 C -0.171 4.171 28 C -0.146 4.146 29 C -0.136 4.136 30 H 0.072 0.928 31 H 0.096 0.904 32 H 0.106 0.894 33 H 0.270 0.730 34 H 0.102 0.898 35 H 0.096 0.904 36 H 0.089 0.911 37 H 0.094 0.906 38 H 0.093 0.907 39 H 0.086 0.914 40 H 0.100 0.900 41 H 0.102 0.898 42 H 0.132 0.868 43 H 0.124 0.876 44 H 0.123 0.877 45 H 0.125 0.875 46 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges 7.310 -15.151 6.230 17.938 hybrid contribution 1.280 -0.202 -0.399 1.356 sum 8.590 -15.352 5.831 18.533 Atomic orbital electron populations 1.69872 1.05934 1.26827 1.48574 1.24799 0.94684 0.98972 0.93858 0.86752 0.79869 0.83576 0.78425 1.20337 1.21221 1.20222 1.20621 0.92397 0.89569 1.51546 0.93026 1.17872 0.98783 0.91048 0.86257 0.90549 1.21859 1.03712 1.02006 0.86737 1.21990 0.78147 0.83130 0.88237 1.90963 1.38906 1.22885 1.75221 1.46855 1.62228 1.30139 0.89430 1.45884 1.33616 1.15702 0.99308 1.79428 1.17509 1.04785 1.00490 1.75010 1.15801 1.18321 1.04366 1.21437 1.03623 0.94666 0.95816 1.21618 1.07773 1.00821 0.88454 1.20133 0.97356 0.90810 0.99882 1.21563 0.98032 1.02400 0.93112 1.21635 1.00089 0.95794 0.98223 1.19924 1.00984 0.95185 0.90769 1.20642 0.91872 0.91148 0.98862 1.20954 0.98970 1.00044 0.93242 1.20985 0.96592 1.01748 0.95675 1.20825 0.93097 1.04402 0.98782 1.20998 0.97663 1.01422 0.94507 1.21103 0.97696 0.99884 0.94880 0.92835 0.90410 0.89390 0.73035 0.89837 0.90364 0.91118 0.90556 0.90655 0.91362 0.90019 0.89773 0.86783 0.87574 0.87717 0.87534 0.86695 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.55 12.85 55.43 0.71 -24.84 16 2 C 0.08 2.28 5.45 -17.82 -0.10 2.18 16 3 Si 0.89 22.30 29.54 -169.99 -5.02 17.28 16 4 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 5 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 6 H -0.28 -7.11 7.11 56.52 0.40 -6.71 16 7 C -0.50 -13.15 6.38 -34.44 -0.22 -13.37 16 8 H 0.05 1.34 7.82 -52.49 -0.41 0.93 16 9 C 0.08 1.80 1.68 -92.92 -0.16 1.64 16 10 H 0.08 2.01 6.95 -51.93 -0.36 1.65 16 11 C -0.10 -1.74 4.95 -27.88 -0.14 -1.88 16 12 C 0.50 9.67 7.69 -10.98 -0.08 9.59 16 13 O -0.42 -10.70 13.74 5.56 0.08 -10.63 16 14 N -0.53 -7.99 6.45 31.22 0.20 -7.78 16 15 N -0.07 -1.22 4.45 33.39 0.15 -1.07 16 16 N -0.04 -0.90 11.26 60.35 0.68 -0.22 16 17 N -0.27 -5.25 12.40 33.16 0.41 -4.84 16 18 C -0.01 -0.19 7.11 -83.13 -0.59 -0.78 16 19 C -0.05 -0.70 6.93 -82.49 -0.57 -1.27 16 20 C -0.04 -0.34 6.14 -27.74 -0.17 -0.51 16 21 C -0.11 -0.72 5.90 -26.45 -0.16 -0.88 16 22 C -0.12 -0.80 5.89 -26.47 -0.16 -0.96 16 23 C -0.03 -0.29 6.30 -27.73 -0.17 -0.46 16 24 C -0.02 -0.51 4.77 -104.62 -0.50 -1.01 16 25 C -0.11 -2.15 8.86 -39.58 -0.35 -2.50 16 26 C -0.13 -2.22 10.05 -39.58 -0.40 -2.62 16 27 C -0.15 -2.51 10.05 -39.58 -0.40 -2.91 16 28 C -0.13 -2.24 10.05 -39.58 -0.40 -2.64 16 29 C -0.12 -2.36 9.67 -39.58 -0.38 -2.74 16 30 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 31 H 0.08 1.09 8.14 -51.93 -0.42 0.66 16 32 H 0.09 1.32 7.76 -51.93 -0.40 0.92 16 33 H 0.43 4.21 8.67 -182.60 -1.58 2.62 16 34 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 35 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 36 H 0.07 0.48 8.12 -51.93 -0.42 0.06 16 37 H 0.08 0.33 8.14 -51.92 -0.42 -0.09 16 38 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 39 H 0.07 0.47 8.12 -51.93 -0.42 0.05 16 40 H 0.08 0.72 8.14 -51.93 -0.42 0.29 16 41 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 42 H 0.11 2.04 7.75 -52.48 -0.41 1.63 16 43 H 0.11 1.50 8.06 -52.49 -0.42 1.07 16 44 H 0.10 1.43 8.06 -52.49 -0.42 1.01 16 45 H 0.11 1.60 8.06 -52.49 -0.42 1.18 16 46 H 0.11 2.34 7.95 -52.49 -0.42 1.92 16 LS Contribution 382.50 15.07 5.76 5.76 Total: -1.00 -36.08 382.50 -9.76 -45.84 By element: Atomic # 1 Polarization: 9.42 SS G_CDS: -7.79 Total: 1.63 kcal Atomic # 6 Polarization: -16.18 SS G_CDS: -4.94 Total: -21.13 kcal Atomic # 7 Polarization: -40.91 SS G_CDS: 2.15 Total: -38.76 kcal Atomic # 8 Polarization: -10.70 SS G_CDS: 0.08 Total: -10.63 kcal Atomic # 14 Polarization: 22.30 SS G_CDS: -5.02 Total: 17.28 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -36.08 -9.76 -45.84 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000887220468.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 165.352 kcal (2) G-P(sol) polarization free energy of solvation -36.085 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 129.267 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.757 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.842 kcal (6) G-S(sol) free energy of system = (1) + (5) 119.509 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds