Wall clock time and date at job start Sat Apr 11 2020 06:04:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86801 * 119.99966 * 2 1 4 4 H 1.48502 * 109.47233 * 240.00109 * 3 2 1 5 5 H 1.48502 * 109.47256 * 0.02562 * 3 2 1 6 6 H 1.48497 * 109.47036 * 120.00132 * 3 2 1 7 7 C 1.37877 * 120.00034 * 179.97438 * 2 1 3 8 8 H 1.07996 * 119.99669 * 184.93996 * 7 2 1 9 9 C 1.50702 * 119.99848 * 4.94156 * 7 2 1 10 10 H 1.08998 * 109.47087 * 329.58517 * 9 7 2 11 11 C 1.53000 * 109.47208 * 209.58190 * 9 7 2 12 12 C 1.50710 * 109.46692 * 65.00156 * 11 9 7 13 13 O 1.21278 * 120.00001 * 0.02562 * 12 11 9 14 14 N 1.34776 * 119.99523 * 180.02562 * 12 11 9 15 15 N 1.40097 * 119.99611 * 180.02562 * 14 12 11 16 16 N 1.29107 * 126.00760 * 359.68550 * 15 14 12 17 17 N 1.29022 * 110.25458 * 179.80311 * 16 15 14 18 18 C 1.32902 * 108.64020 * 0.39255 * 17 16 15 19 19 C 1.34403 * 126.00728 * 180.02562 * 15 14 12 20 20 C 1.50538 * 129.25029 * 0.19026 * 19 15 14 21 21 C 1.53437 * 108.32096 * 163.52271 * 20 19 15 22 22 C 1.53106 * 109.55507 * 49.70405 * 21 20 19 23 23 C 1.50597 * 129.16359 * 179.97438 * 18 17 16 24 24 C 1.50696 * 109.47037 * 89.58142 * 9 7 2 25 25 C 1.38239 * 120.00183 * 56.77195 * 24 9 7 26 26 C 1.38229 * 120.00496 * 179.78427 * 25 24 9 27 27 C 1.38242 * 119.99689 * 0.44232 * 26 25 24 28 28 C 1.38234 * 120.00078 * 359.80954 * 27 26 25 29 29 C 1.38234 * 120.00245 * 237.04033 * 24 9 7 30 30 H 0.97002 * 119.99831 * 0.02562 * 1 2 3 31 31 H 1.08995 * 109.47199 * 184.99467 * 11 9 7 32 32 H 1.08994 * 109.47195 * 305.00626 * 11 9 7 33 33 H 0.97003 * 120.00288 * 359.97438 * 14 12 11 34 34 H 1.08992 * 109.69260 * 283.22922 * 20 19 15 35 35 H 1.08997 * 109.69249 * 43.81518 * 20 19 15 36 36 H 1.09003 * 109.45553 * 289.67713 * 21 20 19 37 37 H 1.09007 * 109.45361 * 169.73152 * 21 20 19 38 38 H 1.08999 * 109.45681 * 169.88650 * 22 21 20 39 39 H 1.09002 * 109.45373 * 49.95557 * 22 21 20 40 40 H 1.09004 * 109.68967 * 283.12901 * 23 18 17 41 41 H 1.08997 * 109.69413 * 43.66816 * 23 18 17 42 42 H 1.08004 * 119.99189 * 359.97438 * 25 24 9 43 43 H 1.07994 * 120.00489 * 180.26973 * 26 25 24 44 44 H 1.08000 * 119.99535 * 179.82986 * 27 26 25 45 45 H 1.07997 * 120.00147 * 180.02562 * 28 27 26 46 46 H 1.07997 * 120.00218 * 359.97438 * 29 24 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.1029 1.6965 -1.2125 5 1 1.2842 2.7465 0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0815 -1.1957 0.0811 9 6 1.2552 -2.4968 -0.1113 10 1 0.2697 -2.3891 0.3417 11 6 2.0329 -3.5964 0.6146 12 6 2.0796 -3.2887 2.0892 13 8 1.5434 -2.2887 2.5173 14 7 2.7174 -4.1248 2.9321 15 7 2.7605 -3.8391 4.3030 16 7 2.2365 -2.8102 4.8806 17 7 2.4547 -2.8522 6.1516 18 6 3.1572 -3.9464 6.4261 19 6 3.3600 -4.5846 5.2470 20 6 4.1217 -5.8747 5.1006 21 6 4.9428 -6.0977 6.3775 22 6 4.0419 -5.9231 7.6030 23 6 3.6605 -4.4451 7.7550 24 6 1.1025 -2.8652 -1.5645 25 6 2.2210 -2.9908 -2.3671 26 6 2.0813 -3.3331 -3.6990 27 6 0.8223 -3.5410 -4.2307 28 6 -0.2966 -3.4103 -3.4296 29 6 -0.1565 -3.0722 -2.0965 30 1 -0.4850 0.8401 -0.0004 31 1 1.5377 -4.5548 0.4591 32 1 3.0481 -3.6438 0.2210 33 1 3.1460 -4.9249 2.5897 34 1 3.4232 -6.7002 4.9642 35 1 4.7890 -5.8117 4.2411 36 1 5.7554 -5.3723 6.4179 37 1 5.3565 -7.1062 6.3716 38 1 4.5738 -6.2545 8.4948 39 1 3.1382 -6.5195 7.4772 40 1 4.5362 -3.8697 8.0554 41 1 2.8778 -4.3418 8.5064 42 1 3.2044 -2.8243 -1.9525 43 1 2.9554 -3.4354 -4.3249 44 1 0.7130 -3.8057 -5.2721 45 1 -1.2801 -3.5731 -3.8449 46 1 -1.0307 -2.9703 -1.4706 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000887220468.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:04:40 Heat of formation + Delta-G solvation = 95.552573 kcal Electronic energy + Delta-G solvation = -29073.173405 eV Core-core repulsion = 25158.123193 eV Total energy + Delta-G solvation = -3915.050212 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -44.52469 -40.89560 -39.75791 -37.95874 -36.87444 -35.82531 -33.64277 -32.96096 -31.49545 -31.24433 -31.00205 -30.09689 -27.63456 -25.43594 -24.86639 -23.87169 -23.53966 -23.07606 -21.53935 -21.14412 -20.39133 -19.60456 -18.57943 -18.08314 -17.85933 -17.15918 -16.56118 -16.26771 -15.85805 -15.70347 -15.55166 -15.33042 -15.04238 -14.82152 -14.68788 -14.45625 -14.31447 -14.01592 -13.73021 -13.69179 -13.22800 -13.13451 -12.86825 -12.69964 -12.59205 -12.57339 -12.48789 -12.30953 -11.86119 -11.80976 -11.72969 -11.62046 -11.37533 -11.35192 -11.09172 -10.89999 -10.49455 -10.24432 -9.93892 -9.53294 -9.21916 -8.09042 -6.12020 0.00100 0.49332 0.78783 0.84069 1.31810 1.36737 1.39258 1.42042 1.64572 2.41860 2.67153 3.16462 3.26624 3.36512 3.64900 3.78611 3.82902 4.03366 4.13626 4.21995 4.32712 4.35320 4.38778 4.45389 4.51300 4.55247 4.59162 4.60264 4.68856 4.85949 4.91014 4.96416 5.04323 5.08310 5.14628 5.21736 5.23155 5.36828 5.38730 5.49840 5.49897 5.61999 5.73633 5.78165 5.85147 5.93245 6.05678 6.13443 6.36965 6.45644 6.96206 7.17704 7.42643 7.51687 8.99899 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.013213 B = 0.003086 C = 0.002678 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2118.651570 B = 9070.860556 C =10454.771482 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.914 5.914 2 C 0.025 3.975 3 Si 0.929 3.071 4 H -0.260 1.260 5 H -0.290 1.290 6 H -0.289 1.289 7 C -0.492 4.492 8 H 0.050 0.950 9 C 0.081 3.919 10 H 0.026 0.974 11 C -0.093 4.093 12 C 0.503 3.497 13 O -0.493 6.493 14 N -0.505 5.505 15 N -0.083 5.083 16 N -0.121 5.121 17 N -0.306 5.306 18 C -0.026 4.026 19 C -0.031 4.031 20 C -0.046 4.046 21 C -0.110 4.110 22 C -0.114 4.114 23 C -0.032 4.032 24 C -0.045 4.045 25 C -0.123 4.123 26 C -0.126 4.126 27 C -0.146 4.146 28 C -0.130 4.130 29 C -0.142 4.142 30 H 0.253 0.747 31 H 0.117 0.883 32 H 0.120 0.880 33 H 0.454 0.546 34 H 0.107 0.893 35 H 0.100 0.900 36 H 0.067 0.933 37 H 0.110 0.890 38 H 0.103 0.897 39 H 0.069 0.931 40 H 0.090 0.910 41 H 0.084 0.916 42 H 0.122 0.878 43 H 0.142 0.858 44 H 0.142 0.858 45 H 0.129 0.871 46 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.968 -21.438 4.718 25.002 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.553 5.553 2 C -0.174 4.174 3 Si 0.756 3.244 4 H -0.185 1.185 5 H -0.216 1.216 6 H -0.215 1.215 7 C -0.530 4.530 8 H 0.069 0.931 9 C 0.061 3.939 10 H 0.044 0.956 11 C -0.134 4.134 12 C 0.290 3.710 13 O -0.358 6.358 14 N -0.266 5.266 15 N 0.043 4.957 16 N -0.099 5.099 17 N -0.170 5.170 18 C -0.169 4.169 19 C -0.166 4.166 20 C -0.085 4.085 21 C -0.148 4.148 22 C -0.152 4.152 23 C -0.071 4.071 24 C -0.046 4.046 25 C -0.141 4.141 26 C -0.144 4.144 27 C -0.163 4.163 28 C -0.148 4.148 29 C -0.161 4.161 30 H 0.062 0.938 31 H 0.135 0.865 32 H 0.138 0.862 33 H 0.302 0.698 34 H 0.125 0.875 35 H 0.118 0.882 36 H 0.086 0.914 37 H 0.128 0.872 38 H 0.121 0.879 39 H 0.087 0.913 40 H 0.109 0.891 41 H 0.102 0.898 42 H 0.140 0.860 43 H 0.160 0.840 44 H 0.160 0.840 45 H 0.147 0.853 46 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 10.539 -19.191 4.719 22.397 hybrid contribution 0.364 0.846 0.121 0.929 sum 10.903 -18.346 4.840 21.883 Atomic orbital electron populations 1.70023 1.07064 1.26443 1.51764 1.25452 0.95248 1.01686 0.95020 0.86075 0.78822 0.81174 0.78313 1.18465 1.21625 1.21540 1.20995 0.92380 0.91035 1.48549 0.93141 1.17640 0.96438 0.91568 0.88218 0.95582 1.21762 1.05060 1.01729 0.84877 1.22327 0.77052 0.82339 0.89290 1.90956 1.42061 1.26145 1.76665 1.46308 1.61244 1.30215 0.88847 1.45987 1.33950 1.15817 0.99971 1.79392 1.21214 1.07744 1.01589 1.74937 1.17239 1.20713 1.04145 1.22427 1.02624 0.93433 0.98458 1.22668 1.05486 1.01513 0.86983 1.20556 0.97802 0.88078 1.02022 1.21630 0.97366 1.04284 0.91548 1.21666 1.00640 0.93018 0.99891 1.20203 1.01136 0.97603 0.88155 1.20405 0.93057 0.93421 0.97677 1.21076 0.98409 1.00393 0.94221 1.21384 0.98169 0.99846 0.94977 1.21278 0.92334 1.02419 1.00307 1.21271 0.99615 1.00519 0.93354 1.21104 0.96918 1.01761 0.96275 0.93775 0.86519 0.86196 0.69769 0.87480 0.88162 0.91443 0.87167 0.87882 0.91261 0.89121 0.89751 0.86000 0.84034 0.84005 0.85273 0.88943 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -56.83 12.85 21.45 0.28 -56.56 16 2 C 0.03 1.48 5.45 84.65 0.46 1.94 16 3 Si 0.93 47.49 29.54 68.60 2.03 49.51 16 4 H -0.26 -12.38 7.11 99.48 0.71 -11.67 16 5 H -0.29 -14.85 7.11 99.48 0.71 -14.15 16 6 H -0.29 -15.18 7.11 99.48 0.71 -14.47 16 7 C -0.49 -26.50 6.38 25.60 0.16 -26.34 16 8 H 0.05 2.65 7.82 -2.91 -0.02 2.63 16 9 C 0.08 3.77 1.68 -12.29 -0.02 3.75 16 10 H 0.03 1.47 6.95 -2.39 -0.02 1.45 16 11 C -0.09 -3.15 4.95 29.85 0.15 -3.01 16 12 C 0.50 19.96 7.69 87.66 0.67 20.63 16 13 O -0.49 -26.87 13.74 -3.02 -0.04 -26.91 16 14 N -0.50 -15.02 6.45 -173.53 -1.12 -16.14 16 15 N -0.08 -2.90 4.45 -48.26 -0.21 -3.12 16 16 N -0.12 -5.54 11.26 37.02 0.42 -5.12 16 17 N -0.31 -12.63 12.40 -48.99 -0.61 -13.24 16 18 C -0.03 -0.76 7.11 41.75 0.30 -0.46 16 19 C -0.03 -0.80 6.93 41.50 0.29 -0.51 16 20 C -0.05 -0.56 6.14 29.94 0.18 -0.37 16 21 C -0.11 -0.91 5.90 30.78 0.18 -0.73 16 22 C -0.11 -1.13 5.89 30.76 0.18 -0.94 16 23 C -0.03 -0.57 6.30 29.95 0.19 -0.39 16 24 C -0.04 -1.87 4.77 -19.87 -0.09 -1.96 16 25 C -0.12 -4.36 8.86 22.27 0.20 -4.16 16 26 C -0.13 -3.73 10.05 22.27 0.22 -3.51 16 27 C -0.15 -4.21 10.05 22.27 0.22 -3.98 16 28 C -0.13 -4.31 10.05 22.27 0.22 -4.08 16 29 C -0.14 -5.80 9.67 22.27 0.22 -5.59 16 30 H 0.25 15.42 8.31 -92.71 -0.77 14.65 16 31 H 0.12 3.05 8.14 -2.39 -0.02 3.03 16 32 H 0.12 3.31 7.76 -2.39 -0.02 3.30 16 33 H 0.45 7.76 8.67 -213.32 -1.85 5.91 16 34 H 0.11 0.92 8.14 -2.39 -0.02 0.90 16 35 H 0.10 0.86 8.14 -2.39 -0.02 0.84 16 36 H 0.07 0.64 8.12 -2.39 -0.02 0.62 16 37 H 0.11 0.28 8.14 -2.38 -0.02 0.26 16 38 H 0.10 0.51 8.14 -2.39 -0.02 0.50 16 39 H 0.07 0.70 8.12 -2.39 -0.02 0.68 16 40 H 0.09 1.46 8.14 -2.38 -0.02 1.45 16 41 H 0.08 1.50 8.14 -2.39 -0.02 1.48 16 42 H 0.12 4.04 7.75 -2.91 -0.02 4.02 16 43 H 0.14 3.20 8.06 -2.91 -0.02 3.18 16 44 H 0.14 3.08 8.06 -2.91 -0.02 3.06 16 45 H 0.13 3.61 8.06 -2.91 -0.02 3.58 16 46 H 0.09 4.06 7.95 -2.91 -0.02 4.04 16 Total: -1.00 -89.61 382.50 3.62 -85.99 By element: Atomic # 1 Polarization: 16.15 SS G_CDS: -0.85 Total: 15.30 kcal Atomic # 6 Polarization: -33.45 SS G_CDS: 3.74 Total: -29.71 kcal Atomic # 7 Polarization: -92.92 SS G_CDS: -1.25 Total: -94.17 kcal Atomic # 8 Polarization: -26.87 SS G_CDS: -0.04 Total: -26.91 kcal Atomic # 14 Polarization: 47.49 SS G_CDS: 2.03 Total: 49.51 kcal Total: -89.61 3.62 -85.99 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000887220468.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 181.539 kcal (2) G-P(sol) polarization free energy of solvation -89.608 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 91.931 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.622 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.986 kcal (6) G-S(sol) free energy of system = (1) + (5) 95.553 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds