Wall clock time and date at job start Sat Apr 11 2020 06:04:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86801 * 120.00305 * 2 1 4 4 H 1.48507 * 109.46910 * 274.99076 * 3 2 1 5 5 H 1.48501 * 109.47100 * 34.98581 * 3 2 1 6 6 H 1.48496 * 109.47677 * 154.99222 * 3 2 1 7 7 C 1.38813 * 120.00300 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00552 * 157.29240 * 7 2 1 9 9 N 1.36940 * 119.99556 * 337.29549 * 7 2 1 10 10 C 1.46923 * 120.63068 * 333.16245 * 9 7 2 11 11 C 1.53195 * 108.77648 * 233.58508 * 10 9 7 12 12 C 1.53032 * 109.31516 * 305.36899 * 11 10 9 13 13 C 1.53043 * 109.54188 * 61.36134 * 12 11 10 14 14 H 1.09003 * 109.49528 * 58.61819 * 13 12 11 15 15 C 1.52993 * 109.49987 * 178.68423 * 13 12 11 16 16 N 1.46500 * 109.47042 * 185.00392 * 15 13 12 17 17 C 1.34781 * 119.99910 * 180.02562 * 16 15 13 18 18 O 1.21538 * 119.99959 * 359.97438 * 17 16 15 19 19 C 1.47910 * 120.00086 * 179.97438 * 17 16 15 20 20 N 1.32383 * 120.63535 * 5.57859 * 19 17 16 21 21 N 1.28082 * 123.18220 * 179.97438 * 20 19 17 22 22 C 1.31794 * 123.49706 * 0.02562 * 21 20 19 23 23 C 1.40401 * 119.13846 * 0.02562 * 22 21 20 24 24 C 1.40240 * 122.73578 * 179.97438 * 23 22 21 25 25 C 1.36264 * 119.36381 * 180.02562 * 24 23 22 26 26 C 1.39373 * 121.07580 * 0.02562 * 25 24 23 27 27 C 1.36360 * 121.08878 * 0.02562 * 26 25 24 28 28 C 1.39830 * 119.42237 * 359.70095 * 27 26 25 29 29 C 1.46927 * 120.63050 * 152.88859 * 9 7 2 30 30 H 0.96998 * 119.99594 * 359.97438 * 1 2 3 31 31 H 1.08998 * 109.58812 * 353.37448 * 10 9 7 32 32 H 1.09006 * 109.58645 * 113.65919 * 10 9 7 33 33 H 1.09002 * 109.49338 * 65.32206 * 11 10 9 34 34 H 1.08999 * 109.49676 * 185.38110 * 11 10 9 35 35 H 1.09003 * 109.46234 * 181.38617 * 12 11 10 36 36 H 1.09005 * 109.45923 * 301.35799 * 12 11 10 37 37 H 1.09005 * 109.47136 * 304.99999 * 15 13 12 38 38 H 1.09004 * 109.47330 * 65.00156 * 15 13 12 39 39 H 0.97002 * 120.00417 * 359.97438 * 16 15 13 40 40 H 1.08005 * 120.43306 * 179.97438 * 22 21 20 41 41 H 1.07991 * 120.31930 * 359.97438 * 24 23 22 42 42 H 1.08004 * 119.45573 * 179.97438 * 25 24 23 43 43 H 1.08000 * 119.45410 * 180.02562 * 26 25 24 44 44 H 1.08006 * 120.28993 * 179.97438 * 27 26 25 45 45 H 1.09002 * 109.58322 * 246.20192 * 29 9 7 46 46 H 1.09000 * 109.58627 * 6.61950 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.3923 2.1072 -1.3948 5 1 1.5044 2.6200 0.8028 6 1 3.5966 1.4120 0.5918 7 6 2.0103 -1.2021 0.0005 8 1 3.0275 -1.2386 -0.3605 9 7 1.4052 -2.3419 0.4588 10 6 0.3261 -2.2685 1.4532 11 6 0.6830 -3.1745 2.6359 12 6 0.9698 -4.5874 2.1227 13 6 2.1626 -4.5516 1.1644 14 1 3.0331 -4.1486 1.6820 15 6 2.4691 -5.9692 0.6775 16 7 3.6820 -5.9518 -0.1439 17 6 4.1460 -7.0958 -0.6849 18 8 3.5584 -8.1419 -0.4908 19 6 5.3703 -7.0782 -1.5146 20 7 6.0813 -5.9690 -1.6445 21 7 7.1483 -5.8989 -2.3496 22 6 7.6475 -6.9198 -3.0171 23 6 6.9884 -8.1584 -2.9654 24 6 7.4523 -9.2933 -3.6462 25 6 6.7578 -10.4616 -3.5484 26 6 5.5954 -10.5456 -2.7840 27 6 5.1158 -9.4614 -2.1102 28 6 5.8056 -8.2473 -2.1828 29 6 1.8186 -3.6610 -0.0390 30 1 -0.4849 0.8401 0.0004 31 1 0.2178 -1.2408 1.7998 32 1 -0.6088 -2.6028 1.0033 33 1 1.5672 -2.7838 3.1395 34 1 -0.1515 -3.2038 3.3365 35 1 1.2000 -5.2399 2.9649 36 1 0.0936 -4.9678 1.5975 37 1 2.6211 -6.6234 1.5360 38 1 1.6330 -6.3380 0.0832 39 1 4.1508 -5.1169 -0.2991 40 1 8.5513 -6.8049 -3.5971 41 1 8.3509 -9.2417 -4.2429 42 1 7.1135 -11.3364 -4.0724 43 1 5.0657 -11.4849 -2.7244 44 1 4.2135 -9.5410 -1.5220 45 1 1.0035 -4.1088 -0.6075 46 1 2.6954 -3.5522 -0.6774 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000895413145.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:04:55 Heat of formation + Delta-G solvation = 59.328168 kcal Electronic energy + Delta-G solvation = -28714.595040 eV Core-core repulsion = 24797.974020 eV Total energy + Delta-G solvation = -3916.621020 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.80075 -39.60495 -38.38002 -37.79918 -34.97260 -33.74604 -32.99867 -32.15084 -31.02808 -30.42676 -30.13160 -26.60007 -25.29419 -24.94377 -24.62653 -23.12858 -22.12033 -21.21575 -20.86360 -19.25715 -18.72071 -18.44652 -17.67025 -16.67223 -16.40117 -15.96433 -15.83293 -15.01669 -14.98598 -14.92833 -14.68935 -14.26861 -14.13784 -13.74010 -13.59551 -13.42973 -12.94981 -12.78857 -12.70541 -12.35487 -12.30389 -12.18448 -11.95843 -11.71663 -11.27168 -11.04545 -10.92006 -10.66172 -10.48782 -10.23441 -10.18807 -10.06046 -9.94553 -9.84433 -9.76466 -9.57025 -9.40897 -9.10686 -8.81592 -8.41572 -6.68062 -5.78580 -3.16363 -0.38490 0.23482 1.22245 2.32470 2.84696 2.88892 3.40023 3.47853 3.51699 3.61069 3.65135 3.99019 4.11772 4.23085 4.32565 4.52131 4.64199 4.71242 4.81575 5.05137 5.11606 5.24925 5.27987 5.36195 5.42565 5.45831 5.53780 5.61641 5.79722 5.80065 5.86099 5.94679 5.98307 5.99961 6.22367 6.26141 6.33759 6.35604 6.47053 6.60410 6.68952 6.77849 6.84500 6.96355 7.37147 7.40856 7.62945 7.83996 8.00939 8.41642 8.44975 9.22048 9.86847 10.43442 11.30165 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.015286 B = 0.002594 C = 0.002289 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1831.288551 B =10789.713024 C =12230.176950 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.004 3.996 3 Si 0.896 3.104 4 H -0.288 1.288 5 H -0.290 1.290 6 H -0.278 1.278 7 C -0.255 4.255 8 H 0.066 0.934 9 N -0.590 5.590 10 C 0.169 3.831 11 C -0.141 4.141 12 C -0.098 4.098 13 C -0.119 4.119 14 H 0.076 0.924 15 C 0.124 3.876 16 N -0.694 5.694 17 C 0.576 3.424 18 O -0.534 6.534 19 C 0.070 3.930 20 N -0.225 5.225 21 N -0.261 5.261 22 C 0.101 3.899 23 C -0.087 4.087 24 C -0.096 4.096 25 C -0.096 4.096 26 C -0.103 4.103 27 C -0.090 4.090 28 C -0.047 4.047 29 C 0.153 3.847 30 H 0.253 0.747 31 H 0.081 0.919 32 H 0.018 0.982 33 H 0.055 0.945 34 H 0.050 0.950 35 H 0.048 0.952 36 H 0.057 0.943 37 H 0.068 0.932 38 H 0.072 0.928 39 H 0.416 0.584 40 H 0.181 0.819 41 H 0.141 0.859 42 H 0.133 0.867 43 H 0.134 0.866 44 H 0.175 0.825 45 H 0.019 0.981 46 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.871 -21.929 -4.437 25.811 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.541 5.541 2 C -0.195 4.195 3 Si 0.726 3.274 4 H -0.215 1.215 5 H -0.216 1.216 6 H -0.203 1.203 7 C -0.385 4.385 8 H 0.084 0.916 9 N -0.312 5.312 10 C 0.043 3.957 11 C -0.180 4.180 12 C -0.137 4.137 13 C -0.140 4.140 14 H 0.095 0.905 15 C 0.001 3.999 16 N -0.344 5.344 17 C 0.359 3.641 18 O -0.411 6.411 19 C -0.088 4.088 20 N -0.061 5.061 21 N -0.093 5.093 22 C -0.073 4.073 23 C -0.094 4.094 24 C -0.116 4.116 25 C -0.116 4.116 26 C -0.122 4.122 27 C -0.109 4.109 28 C -0.055 4.055 29 C 0.026 3.974 30 H 0.063 0.937 31 H 0.099 0.901 32 H 0.036 0.964 33 H 0.074 0.926 34 H 0.069 0.931 35 H 0.066 0.934 36 H 0.076 0.924 37 H 0.086 0.914 38 H 0.090 0.910 39 H 0.253 0.747 40 H 0.198 0.802 41 H 0.158 0.842 42 H 0.151 0.849 43 H 0.152 0.848 44 H 0.192 0.808 45 H 0.037 0.963 46 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 12.459 -20.748 -3.837 24.503 hybrid contribution 0.610 -0.210 -0.618 0.894 sum 13.069 -20.958 -4.455 25.098 Atomic orbital electron populations 1.70115 1.05362 1.25545 1.53109 1.24964 0.95092 0.98498 1.00949 0.86382 0.79515 0.83926 0.77624 1.21501 1.21589 1.20317 1.19160 0.94847 0.85798 1.38678 0.91582 1.44065 1.41648 1.00522 1.44979 1.20751 0.89372 0.98762 0.86766 1.22151 1.00394 0.95677 0.99800 1.21332 0.97109 0.97768 0.97460 1.22057 0.99384 0.93067 0.99479 0.90548 1.21623 0.85656 0.98517 0.94121 1.46006 1.28229 1.10354 1.49786 1.17422 0.82670 0.84474 0.79504 1.90605 1.58789 1.30584 1.61114 1.23025 0.97003 0.91345 0.97418 1.72793 1.00604 1.22384 1.10330 1.72695 1.05233 1.26715 1.04630 1.24863 0.99062 0.88631 0.94768 1.18930 0.95607 0.96203 0.98666 1.20954 1.00297 0.91534 0.98857 1.21175 0.94803 0.98082 0.97524 1.21283 0.95850 0.99354 0.95720 1.22042 1.00887 0.90417 0.97536 1.18618 0.95092 0.95050 0.96692 1.20999 0.97502 0.86835 0.92099 0.93708 0.90069 0.96379 0.92627 0.93128 0.93357 0.92423 0.91381 0.90993 0.74652 0.80157 0.84158 0.84923 0.84786 0.80809 0.96323 0.92921 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.23 11.49 55.49 0.64 -25.59 16 2 C 0.00 0.11 4.76 -17.43 -0.08 0.03 16 3 Si 0.90 21.84 29.61 -169.99 -5.03 16.80 16 4 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 5 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 6 H -0.28 -6.67 7.11 56.52 0.40 -6.26 16 7 C -0.26 -7.03 9.55 -15.06 -0.14 -7.17 16 8 H 0.07 1.79 7.92 -52.48 -0.42 1.38 16 9 N -0.59 -14.64 2.99 -172.05 -0.51 -15.16 16 10 C 0.17 4.00 5.35 -3.71 -0.02 3.98 16 11 C -0.14 -2.63 6.08 -26.61 -0.16 -2.79 16 12 C -0.10 -1.59 5.16 -26.69 -0.14 -1.73 16 13 C -0.12 -1.96 2.39 -90.28 -0.22 -2.18 16 14 H 0.08 1.31 8.14 -51.93 -0.42 0.88 16 15 C 0.12 1.78 5.06 -4.05 -0.02 1.75 16 16 N -0.69 -9.99 5.32 -61.23 -0.33 -10.32 16 17 C 0.58 8.43 7.78 -12.30 -0.10 8.33 16 18 O -0.53 -8.27 13.59 5.33 0.07 -8.19 16 19 C 0.07 0.97 6.90 -82.42 -0.57 0.40 16 20 N -0.22 -3.32 10.70 33.56 0.36 -2.96 16 21 N -0.26 -3.51 11.41 30.90 0.35 -3.16 16 22 C 0.10 0.97 11.20 -16.75 -0.19 0.78 16 23 C -0.09 -0.84 5.75 -106.85 -0.61 -1.45 16 24 C -0.10 -0.63 9.84 -39.54 -0.39 -1.02 16 25 C -0.10 -0.58 9.95 -39.87 -0.40 -0.98 16 26 C -0.10 -0.77 9.95 -39.84 -0.40 -1.16 16 27 C -0.09 -0.95 9.26 -39.66 -0.37 -1.32 16 28 C -0.05 -0.56 5.77 -106.57 -0.61 -1.18 16 29 C 0.15 3.12 5.63 -3.49 -0.02 3.10 16 30 H 0.25 7.14 8.31 -40.82 -0.34 6.80 16 31 H 0.08 2.15 6.15 -51.93 -0.32 1.83 16 32 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 33 H 0.05 1.06 8.14 -51.93 -0.42 0.63 16 34 H 0.05 0.85 8.14 -51.93 -0.42 0.42 16 35 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 36 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 37 H 0.07 0.92 8.14 -51.93 -0.42 0.49 16 38 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 39 H 0.42 6.08 7.11 -40.82 -0.29 5.79 16 40 H 0.18 0.94 8.06 -52.48 -0.42 0.52 16 41 H 0.14 0.45 8.06 -52.49 -0.42 0.03 16 42 H 0.13 0.40 8.06 -52.48 -0.42 -0.02 16 43 H 0.13 0.67 8.06 -52.49 -0.42 0.25 16 44 H 0.18 2.04 5.12 -52.48 -0.27 1.77 16 45 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 46 H 0.05 1.07 7.16 -51.93 -0.37 0.70 16 LS Contribution 374.12 15.07 5.64 5.64 Total: -1.00 -32.70 374.12 -9.54 -42.24 By element: Atomic # 1 Polarization: 9.58 SS G_CDS: -6.30 Total: 3.28 kcal Atomic # 6 Polarization: 1.84 SS G_CDS: -4.43 Total: -2.59 kcal Atomic # 7 Polarization: -57.69 SS G_CDS: 0.51 Total: -57.18 kcal Atomic # 8 Polarization: -8.27 SS G_CDS: 0.07 Total: -8.19 kcal Atomic # 14 Polarization: 21.84 SS G_CDS: -5.03 Total: 16.80 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -32.70 -9.54 -42.24 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000895413145.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.570 kcal (2) G-P(sol) polarization free energy of solvation -32.699 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 68.872 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.543 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.242 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.328 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds