Wall clock time and date at job start Sat Apr 11 2020 06:04:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86801 * 120.00305 * 2 1 4 4 H 1.48507 * 109.46910 * 274.99076 * 3 2 1 5 5 H 1.48501 * 109.47100 * 34.98581 * 3 2 1 6 6 H 1.48496 * 109.47677 * 154.99222 * 3 2 1 7 7 C 1.38813 * 120.00300 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00552 * 157.29240 * 7 2 1 9 9 N 1.36940 * 119.99556 * 337.29549 * 7 2 1 10 10 C 1.46923 * 120.63068 * 333.16245 * 9 7 2 11 11 C 1.53195 * 108.77648 * 233.58508 * 10 9 7 12 12 C 1.53032 * 109.31516 * 305.36899 * 11 10 9 13 13 C 1.53043 * 109.54188 * 61.36134 * 12 11 10 14 14 H 1.09003 * 109.49528 * 58.61819 * 13 12 11 15 15 C 1.52993 * 109.49987 * 178.68423 * 13 12 11 16 16 N 1.46500 * 109.47042 * 185.00392 * 15 13 12 17 17 C 1.34781 * 119.99910 * 180.02562 * 16 15 13 18 18 O 1.21538 * 119.99959 * 359.97438 * 17 16 15 19 19 C 1.47910 * 120.00086 * 179.97438 * 17 16 15 20 20 N 1.32383 * 120.63535 * 5.57859 * 19 17 16 21 21 N 1.28082 * 123.18220 * 179.97438 * 20 19 17 22 22 C 1.31794 * 123.49706 * 0.02562 * 21 20 19 23 23 C 1.40401 * 119.13846 * 0.02562 * 22 21 20 24 24 C 1.40240 * 122.73578 * 179.97438 * 23 22 21 25 25 C 1.36264 * 119.36381 * 180.02562 * 24 23 22 26 26 C 1.39373 * 121.07580 * 0.02562 * 25 24 23 27 27 C 1.36360 * 121.08878 * 0.02562 * 26 25 24 28 28 C 1.39830 * 119.42237 * 359.70095 * 27 26 25 29 29 C 1.46927 * 120.63050 * 152.88859 * 9 7 2 30 30 H 0.96998 * 119.99594 * 359.97438 * 1 2 3 31 31 H 1.08998 * 109.58812 * 353.37448 * 10 9 7 32 32 H 1.09006 * 109.58645 * 113.65919 * 10 9 7 33 33 H 1.09002 * 109.49338 * 65.32206 * 11 10 9 34 34 H 1.08999 * 109.49676 * 185.38110 * 11 10 9 35 35 H 1.09003 * 109.46234 * 181.38617 * 12 11 10 36 36 H 1.09005 * 109.45923 * 301.35799 * 12 11 10 37 37 H 1.09005 * 109.47136 * 304.99999 * 15 13 12 38 38 H 1.09004 * 109.47330 * 65.00156 * 15 13 12 39 39 H 0.97002 * 120.00417 * 359.97438 * 16 15 13 40 40 H 1.08005 * 120.43306 * 179.97438 * 22 21 20 41 41 H 1.07991 * 120.31930 * 359.97438 * 24 23 22 42 42 H 1.08004 * 119.45573 * 179.97438 * 25 24 23 43 43 H 1.08000 * 119.45410 * 180.02562 * 26 25 24 44 44 H 1.08006 * 120.28993 * 179.97438 * 27 26 25 45 45 H 1.09002 * 109.58322 * 246.20192 * 29 9 7 46 46 H 1.09000 * 109.58627 * 6.61950 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.3923 2.1072 -1.3948 5 1 1.5044 2.6200 0.8028 6 1 3.5966 1.4120 0.5918 7 6 2.0103 -1.2021 0.0005 8 1 3.0275 -1.2386 -0.3605 9 7 1.4052 -2.3419 0.4588 10 6 0.3261 -2.2685 1.4532 11 6 0.6830 -3.1745 2.6359 12 6 0.9698 -4.5874 2.1227 13 6 2.1626 -4.5516 1.1644 14 1 3.0331 -4.1486 1.6820 15 6 2.4691 -5.9692 0.6775 16 7 3.6820 -5.9518 -0.1439 17 6 4.1460 -7.0958 -0.6849 18 8 3.5584 -8.1419 -0.4908 19 6 5.3703 -7.0782 -1.5146 20 7 6.0813 -5.9690 -1.6445 21 7 7.1483 -5.8989 -2.3496 22 6 7.6475 -6.9198 -3.0171 23 6 6.9884 -8.1584 -2.9654 24 6 7.4523 -9.2933 -3.6462 25 6 6.7578 -10.4616 -3.5484 26 6 5.5954 -10.5456 -2.7840 27 6 5.1158 -9.4614 -2.1102 28 6 5.8056 -8.2473 -2.1828 29 6 1.8186 -3.6610 -0.0390 30 1 -0.4849 0.8401 0.0004 31 1 0.2178 -1.2408 1.7998 32 1 -0.6088 -2.6028 1.0033 33 1 1.5672 -2.7838 3.1395 34 1 -0.1515 -3.2038 3.3365 35 1 1.2000 -5.2399 2.9649 36 1 0.0936 -4.9678 1.5975 37 1 2.6211 -6.6234 1.5360 38 1 1.6330 -6.3380 0.0832 39 1 4.1508 -5.1169 -0.2991 40 1 8.5513 -6.8049 -3.5971 41 1 8.3509 -9.2417 -4.2429 42 1 7.1135 -11.3364 -4.0724 43 1 5.0657 -11.4849 -2.7244 44 1 4.2135 -9.5410 -1.5220 45 1 1.0035 -4.1088 -0.6075 46 1 2.6954 -3.5522 -0.6774 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000895413145.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:04:54 Heat of formation + Delta-G solvation = 38.281314 kcal Electronic energy + Delta-G solvation = -28715.507700 eV Core-core repulsion = 24797.974020 eV Total energy + Delta-G solvation = -3917.533680 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -42.61157 -40.72087 -39.35797 -39.06542 -36.38952 -34.81049 -34.46398 -32.85263 -32.33787 -32.15116 -31.23416 -27.72676 -27.21289 -26.06417 -25.36686 -23.97727 -23.76491 -22.59098 -22.05301 -20.76184 -19.67413 -19.20194 -18.73019 -18.37332 -17.27035 -16.97292 -16.92257 -16.75792 -16.13776 -15.87283 -15.64785 -15.59192 -15.29976 -15.02089 -14.96635 -14.55382 -14.50839 -14.02502 -13.77256 -13.64287 -13.62647 -13.29254 -13.01410 -12.93415 -12.60583 -12.58860 -12.49451 -12.29388 -11.99808 -11.84340 -11.73893 -11.58848 -11.34328 -11.10837 -10.89732 -10.80170 -10.52796 -10.42575 -10.22883 -9.54879 -8.71578 -7.90408 -5.31075 -1.15171 -0.48334 0.52379 1.43640 1.44420 1.46646 1.57511 1.84557 2.03515 2.50572 2.73534 2.86448 3.23049 3.26432 3.38094 3.55326 3.58703 3.69422 3.90856 3.95956 3.98538 4.05527 4.19112 4.23618 4.39690 4.42243 4.54095 4.55733 4.61229 4.73051 4.77575 4.84366 4.87599 4.93793 5.00558 5.10057 5.13835 5.21657 5.29077 5.30953 5.33740 5.40637 5.46811 5.54218 5.66419 5.75692 5.75944 6.25831 6.36602 6.88436 7.13157 7.55502 7.85202 8.36823 9.16110 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.015286 B = 0.002594 C = 0.002289 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1831.288551 B =10789.713024 C =12230.176950 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C -0.048 4.048 3 Si 0.961 3.039 4 H -0.287 1.287 5 H -0.290 1.290 6 H -0.270 1.270 7 C -0.265 4.265 8 H 0.064 0.936 9 N -0.608 5.608 10 C 0.173 3.827 11 C -0.130 4.130 12 C -0.095 4.095 13 C -0.102 4.102 14 H 0.074 0.926 15 C 0.134 3.866 16 N -0.697 5.697 17 C 0.576 3.424 18 O -0.547 6.547 19 C 0.046 3.954 20 N -0.252 5.252 21 N -0.306 5.306 22 C 0.118 3.882 23 C -0.103 4.103 24 C -0.081 4.081 25 C -0.093 4.093 26 C -0.086 4.086 27 C -0.123 4.123 28 C -0.069 4.069 29 C 0.152 3.848 30 H 0.250 0.750 31 H 0.046 0.954 32 H -0.004 1.004 33 H 0.052 0.948 34 H 0.073 0.927 35 H 0.085 0.915 36 H 0.059 0.941 37 H 0.085 0.915 38 H 0.069 0.931 39 H 0.414 0.586 40 H 0.227 0.773 41 H 0.184 0.816 42 H 0.175 0.825 43 H 0.160 0.840 44 H 0.154 0.846 45 H 0.009 0.991 46 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.451 -24.873 -5.253 29.748 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.244 4.244 3 Si 0.788 3.212 4 H -0.214 1.214 5 H -0.216 1.216 6 H -0.195 1.195 7 C -0.395 4.395 8 H 0.081 0.919 9 N -0.331 5.331 10 C 0.047 3.953 11 C -0.169 4.169 12 C -0.133 4.133 13 C -0.123 4.123 14 H 0.092 0.908 15 C 0.011 3.989 16 N -0.347 5.347 17 C 0.360 3.640 18 O -0.425 6.425 19 C -0.112 4.112 20 N -0.088 5.088 21 N -0.138 5.138 22 C -0.055 4.055 23 C -0.110 4.110 24 C -0.100 4.100 25 C -0.112 4.112 26 C -0.105 4.105 27 C -0.143 4.143 28 C -0.076 4.076 29 C 0.026 3.974 30 H 0.059 0.941 31 H 0.065 0.935 32 H 0.014 0.986 33 H 0.071 0.929 34 H 0.092 0.908 35 H 0.103 0.897 36 H 0.078 0.922 37 H 0.104 0.896 38 H 0.088 0.912 39 H 0.250 0.750 40 H 0.243 0.757 41 H 0.201 0.799 42 H 0.192 0.808 43 H 0.177 0.823 44 H 0.171 0.829 45 H 0.027 0.973 46 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 15.055 -23.713 -4.647 28.470 hybrid contribution -0.121 0.517 -0.517 0.741 sum 14.934 -23.196 -5.164 28.067 Atomic orbital electron populations 1.70244 1.06723 1.25935 1.54740 1.25703 0.95841 1.01471 1.01375 0.85375 0.78446 0.79946 0.77398 1.21378 1.21626 1.19499 1.19461 0.94911 0.87139 1.38028 0.91850 1.44333 1.41768 1.01362 1.45666 1.20627 0.88441 0.97987 0.88227 1.21989 1.01076 0.95988 0.97820 1.21329 0.96824 0.96621 0.98485 1.21813 0.99560 0.93310 0.97579 0.90802 1.21491 0.85686 0.97049 0.94661 1.46020 1.28249 1.10379 1.50062 1.17621 0.82960 0.84110 0.79308 1.90594 1.59393 1.30886 1.61674 1.22928 0.97102 0.92441 0.98775 1.72656 1.01518 1.23200 1.11400 1.72586 1.05747 1.28761 1.06706 1.25569 0.99404 0.87683 0.92808 1.19250 0.95059 0.97556 0.99132 1.21486 1.01080 0.90106 0.97337 1.21671 0.93577 0.99377 0.96527 1.21682 0.96033 0.99088 0.93707 1.21914 1.01211 0.91380 0.99748 1.18839 0.96509 0.94814 0.97458 1.21098 0.96713 0.85741 0.93843 0.94085 0.93515 0.98587 0.92899 0.90827 0.89693 0.92185 0.89642 0.91240 0.74962 0.75684 0.79922 0.80784 0.82275 0.82863 0.97291 0.93493 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.45 11.49 21.65 0.25 -56.20 16 2 C -0.05 -2.76 4.76 84.86 0.40 -2.36 16 3 Si 0.96 46.10 29.61 68.60 2.03 48.13 16 4 H -0.29 -13.62 7.11 99.48 0.71 -12.92 16 5 H -0.29 -13.82 7.11 99.48 0.71 -13.11 16 6 H -0.27 -12.50 7.11 99.48 0.71 -11.79 16 7 C -0.27 -15.05 9.55 84.03 0.80 -14.25 16 8 H 0.06 3.55 7.92 -2.91 -0.02 3.53 16 9 N -0.61 -31.21 2.99 -698.25 -2.09 -33.30 16 10 C 0.17 8.43 5.35 86.36 0.46 8.89 16 11 C -0.13 -4.75 6.08 30.67 0.19 -4.56 16 12 C -0.09 -2.90 5.16 30.62 0.16 -2.74 16 13 C -0.10 -3.33 2.39 -10.57 -0.03 -3.36 16 14 H 0.07 2.49 8.14 -2.39 -0.02 2.47 16 15 C 0.13 3.80 5.06 86.38 0.44 4.24 16 16 N -0.70 -20.82 5.32 -465.91 -2.48 -23.30 16 17 C 0.58 17.66 7.78 86.81 0.68 18.34 16 18 O -0.55 -17.61 13.59 -3.84 -0.05 -17.66 16 19 C 0.05 1.34 6.90 42.43 0.29 1.63 16 20 N -0.25 -7.81 10.70 -47.73 -0.51 -8.32 16 21 N -0.31 -8.33 11.41 -56.16 -0.64 -8.97 16 22 C 0.12 2.07 11.20 85.23 0.95 3.02 16 23 C -0.10 -1.78 5.75 -21.31 -0.12 -1.90 16 24 C -0.08 -0.68 9.84 22.30 0.22 -0.46 16 25 C -0.09 -0.67 9.95 22.08 0.22 -0.45 16 26 C -0.09 -1.05 9.95 22.10 0.22 -0.83 16 27 C -0.12 -2.57 9.26 22.22 0.21 -2.36 16 28 C -0.07 -1.66 5.77 -21.13 -0.12 -1.78 16 29 C 0.15 6.41 5.63 86.51 0.49 6.90 16 30 H 0.25 14.63 8.31 -92.71 -0.77 13.86 16 31 H 0.05 2.58 6.15 -2.39 -0.01 2.56 16 32 H 0.00 -0.21 8.14 -2.38 -0.02 -0.22 16 33 H 0.05 1.97 8.14 -2.39 -0.02 1.95 16 34 H 0.07 2.35 8.14 -2.39 -0.02 2.33 16 35 H 0.08 2.07 8.14 -2.39 -0.02 2.05 16 36 H 0.06 1.84 8.14 -2.38 -0.02 1.82 16 37 H 0.09 2.17 8.14 -2.38 -0.02 2.15 16 38 H 0.07 2.02 8.14 -2.39 -0.02 2.00 16 39 H 0.41 12.79 7.11 -92.71 -0.66 12.13 16 40 H 0.23 1.49 8.06 -2.91 -0.02 1.47 16 41 H 0.18 -0.02 8.06 -2.92 -0.02 -0.04 16 42 H 0.17 -0.10 8.06 -2.91 -0.02 -0.12 16 43 H 0.16 1.06 8.06 -2.91 -0.02 1.03 16 44 H 0.15 3.78 5.12 -2.91 -0.01 3.76 16 45 H 0.01 0.40 8.14 -2.39 -0.02 0.38 16 46 H 0.05 1.99 7.16 -2.39 -0.02 1.98 16 Total: -1.00 -76.71 374.12 2.32 -74.39 By element: Atomic # 1 Polarization: 16.90 SS G_CDS: 0.35 Total: 17.25 kcal Atomic # 6 Polarization: 2.51 SS G_CDS: 5.46 Total: 7.97 kcal Atomic # 7 Polarization: -124.62 SS G_CDS: -5.47 Total: -130.09 kcal Atomic # 8 Polarization: -17.61 SS G_CDS: -0.05 Total: -17.66 kcal Atomic # 14 Polarization: 46.10 SS G_CDS: 2.03 Total: 48.13 kcal Total: -76.71 2.32 -74.39 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000895413145.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.675 kcal (2) G-P(sol) polarization free energy of solvation -76.712 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.963 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.319 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.393 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.281 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds