Wall clock time and date at job start Sat Apr 11 2020 06:03:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86805 * 119.99438 * 2 1 4 4 H 1.48502 * 109.47215 * 89.99928 * 3 2 1 5 5 H 1.48499 * 109.47071 * 209.99716 * 3 2 1 6 6 H 1.48496 * 109.47161 * 329.99515 * 3 2 1 7 7 C 1.38807 * 120.00602 * 180.27358 * 2 1 3 8 8 H 1.07997 * 120.00319 * 152.26051 * 7 2 1 9 9 N 1.36944 * 119.99831 * 332.25585 * 7 2 1 10 10 C 1.47375 * 125.57645 * 342.93455 * 9 7 2 11 11 C 1.54607 * 104.94850 * 204.58510 * 10 9 7 12 12 C 1.54919 * 101.87595 * 323.26206 * 11 10 9 13 13 N 1.46498 * 112.33029 * 273.59520 * 12 11 10 14 14 C 1.34774 * 120.00061 * 295.64013 * 13 12 11 15 15 O 1.21643 * 120.00295 * 0.02562 * 14 13 12 16 16 C 1.47170 * 120.00333 * 180.02562 * 14 13 12 17 17 C 1.38599 * 120.72137 * 359.72459 * 16 14 13 18 18 C 1.38920 * 121.35694 * 179.66418 * 17 16 14 19 19 C 1.35826 * 122.60353 * 0.66676 * 18 17 16 20 20 C 1.40845 * 120.55067 * 359.64723 * 19 18 17 21 21 C 1.38428 * 134.89509 * 180.02562 * 20 19 18 22 22 N 1.33889 * 107.84438 * 179.97438 * 21 20 19 23 23 H 0.96997 * 125.02121 * 180.02562 * 22 21 20 24 24 N 1.39983 * 109.96093 * 359.97438 * 22 21 20 25 25 C 1.31478 * 109.01674 * 0.02562 * 24 22 21 26 26 C 1.53586 * 109.57211 * 148.11808 * 12 11 10 27 27 C 1.54216 * 106.67438 * 246.70260 * 26 12 11 28 28 C 1.56752 * 104.51183 * 24.74527 * 27 26 12 29 29 C 1.46974 * 125.57796 * 163.24417 * 9 7 2 30 30 H 1.08996 * 111.81544 * 300.93565 * 29 9 7 31 31 H 0.97010 * 119.99184 * 173.98955 * 1 2 3 32 32 H 1.08997 * 110.36918 * 323.52948 * 10 9 7 33 33 H 1.09000 * 110.36572 * 85.85680 * 10 9 7 34 34 H 1.08997 * 111.08210 * 205.03097 * 11 10 9 35 35 H 1.09001 * 110.78002 * 81.35837 * 11 10 9 36 36 H 0.97007 * 120.00048 * 115.64325 * 13 12 11 37 37 H 1.07995 * 119.31588 * 0.02562 * 17 16 14 38 38 H 1.08005 * 118.69469 * 180.33145 * 18 17 16 39 39 H 1.08000 * 119.72543 * 179.66240 * 19 18 17 40 40 H 1.08005 * 126.07644 * 359.97153 * 21 20 19 41 41 H 1.08998 * 110.01603 * 6.00940 * 26 12 11 42 42 H 1.08993 * 110.01411 * 127.35006 * 26 12 11 43 43 H 1.08997 * 110.49370 * 143.61409 * 27 26 12 44 44 H 1.09000 * 110.49160 * 266.14145 * 27 26 12 45 45 H 1.08999 * 111.11904 * 204.56686 * 28 27 26 46 46 H 1.09006 * 111.08856 * 80.81392 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6179 0.0000 4 1 2.4975 2.0466 1.4001 5 1 3.5476 1.4404 -0.7000 6 1 1.4475 2.6527 -0.7001 7 6 2.0104 -1.2020 -0.0057 8 1 2.9972 -1.2536 -0.4413 9 7 1.4438 -2.3225 0.5410 10 6 0.2955 -2.3391 1.4647 11 6 0.4393 -3.6595 2.2560 12 6 0.9819 -4.6236 1.1716 13 7 -0.0914 -5.2447 0.3916 14 6 -0.9677 -6.0741 0.9921 15 8 -0.8678 -6.3066 2.1819 16 6 -2.0456 -6.6985 0.2085 17 6 -2.1770 -6.4397 -1.1468 18 6 -3.1852 -7.0272 -1.9006 19 6 -4.1035 -7.8715 -1.3631 20 6 -4.0625 -8.1956 0.0070 21 6 -4.8204 -8.9954 0.8448 22 7 -4.2971 -8.9133 2.0745 23 1 -4.6362 -9.3772 2.8559 24 7 -3.1876 -8.0598 2.0656 25 6 -3.0074 -7.6041 0.8456 26 6 1.9041 -5.6645 1.8235 27 6 3.3258 -5.3902 1.2927 28 6 3.3093 -3.8754 0.8900 29 6 1.8854 -3.7047 0.3078 30 1 1.8443 -3.9703 -0.7485 31 1 -0.4849 -0.8356 -0.0880 32 1 0.3395 -1.4847 2.1400 33 1 -0.6406 -2.3346 0.9062 34 1 -0.5261 -3.9985 2.6317 35 1 1.1547 -3.5462 3.0706 36 1 -0.1714 -5.0591 -0.5572 37 1 -1.4776 -5.7721 -1.6279 38 1 -3.2444 -6.7994 -2.9547 39 1 -4.8713 -8.2980 -1.9915 40 1 -5.6810 -9.5815 0.5577 41 1 1.8828 -5.5548 2.9077 42 1 1.5882 -6.6696 1.5442 43 1 4.0656 -5.5696 2.0729 44 1 3.5339 -6.0105 0.4209 45 1 4.0630 -3.6623 0.1320 46 1 3.4476 -3.2362 1.7621 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000992083052.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:03:08 Heat of formation + Delta-G solvation = 91.064078 kcal Electronic energy + Delta-G solvation = -29955.981094 eV Core-core repulsion = 26040.736246 eV Total energy + Delta-G solvation = -3915.244848 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.41398 -40.11666 -38.17142 -36.85732 -34.42096 -33.40098 -32.21423 -31.53333 -30.86567 -29.76098 -28.92600 -26.50607 -26.09641 -24.76358 -23.73516 -22.37496 -21.98437 -20.64301 -20.09276 -19.40924 -18.81603 -18.25162 -17.45470 -17.28434 -16.81558 -15.79201 -15.39582 -15.19806 -14.91348 -14.43279 -14.22813 -14.03591 -13.68886 -13.63426 -13.49165 -13.28167 -12.91839 -12.51471 -12.23897 -12.02842 -11.90708 -11.76095 -11.60185 -11.45109 -10.86986 -10.66786 -10.61641 -10.54518 -10.44162 -10.31912 -10.21142 -10.06517 -9.96713 -9.85843 -9.44583 -9.35286 -9.06016 -8.56933 -8.34273 -7.81148 -6.88876 -6.03552 -3.09027 0.16644 1.60850 2.07785 2.45627 3.10613 3.39883 3.54409 3.57218 3.72774 3.89483 4.04042 4.29338 4.61650 4.71089 4.82503 4.90212 4.99071 5.12289 5.14803 5.21172 5.28884 5.41379 5.44428 5.65021 5.71918 5.77467 5.85640 5.90569 6.07609 6.09513 6.10988 6.17291 6.24764 6.28780 6.32346 6.38296 6.45106 6.56015 6.59635 6.69032 6.75983 6.81616 6.94383 7.04882 7.17562 7.19567 7.43275 7.86575 7.89022 8.54382 8.60332 9.07853 9.87417 10.43199 11.28638 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.015514 B = 0.003163 C = 0.002902 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1804.341726 B = 8850.099914 C = 9644.799715 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C -0.025 4.025 3 Si 1.066 2.934 4 H -0.294 1.294 5 H -0.293 1.293 6 H -0.291 1.291 7 C -0.332 4.332 8 H 0.065 0.935 9 N -0.595 5.595 10 C 0.146 3.854 11 C -0.133 4.133 12 C 0.166 3.834 13 N -0.705 5.705 14 C 0.557 3.443 15 O -0.520 6.520 16 C -0.113 4.113 17 C -0.032 4.032 18 C -0.166 4.166 19 C -0.016 4.016 20 C -0.220 4.220 21 C 0.087 3.913 22 N -0.432 5.432 23 H 0.444 0.556 24 N -0.267 5.267 25 C 0.138 3.862 26 C -0.109 4.109 27 C -0.125 4.125 28 C -0.125 4.125 29 C 0.161 3.839 30 H 0.046 0.954 31 H 0.269 0.731 32 H 0.050 0.950 33 H 0.023 0.977 34 H 0.071 0.929 35 H 0.071 0.929 36 H 0.397 0.603 37 H 0.133 0.867 38 H 0.129 0.871 39 H 0.126 0.874 40 H 0.189 0.811 41 H 0.070 0.930 42 H 0.061 0.939 43 H 0.059 0.941 44 H 0.058 0.942 45 H 0.060 0.940 46 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.473 -20.331 -2.208 22.136 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.558 5.558 2 C -0.227 4.227 3 Si 0.896 3.104 4 H -0.222 1.222 5 H -0.219 1.219 6 H -0.218 1.218 7 C -0.460 4.460 8 H 0.083 0.917 9 N -0.320 5.320 10 C 0.020 3.980 11 C -0.173 4.173 12 C 0.079 3.921 13 N -0.356 5.356 14 C 0.344 3.656 15 O -0.397 6.397 16 C -0.119 4.119 17 C -0.054 4.054 18 C -0.185 4.185 19 C -0.037 4.037 20 C -0.230 4.230 21 C -0.070 4.070 22 N -0.131 5.131 23 H 0.288 0.712 24 N -0.093 5.093 25 C -0.021 4.021 26 C -0.148 4.148 27 C -0.163 4.163 28 C -0.166 4.166 29 C 0.053 3.947 30 H 0.064 0.936 31 H 0.081 0.919 32 H 0.068 0.932 33 H 0.041 0.959 34 H 0.090 0.910 35 H 0.090 0.910 36 H 0.233 0.767 37 H 0.151 0.849 38 H 0.147 0.853 39 H 0.144 0.856 40 H 0.206 0.794 41 H 0.088 0.912 42 H 0.080 0.920 43 H 0.078 0.922 44 H 0.077 0.923 45 H 0.078 0.922 46 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -8.067 -18.698 -0.058 20.364 hybrid contribution -0.507 -1.844 -1.075 2.194 sum -8.574 -20.543 -1.132 22.289 Atomic orbital electron populations 1.70745 1.06659 1.30287 1.48145 1.25690 0.96446 1.00956 0.99633 0.83501 0.74444 0.75981 0.76458 1.22176 1.21950 1.21767 1.19732 0.99334 0.87635 1.39315 0.91732 1.44575 1.36207 1.00060 1.51195 1.21492 0.90741 0.94409 0.91316 1.23092 1.01275 0.96047 0.96865 1.21558 0.86320 0.91884 0.92302 1.45821 1.30230 1.46945 1.12599 1.17854 0.81317 0.79142 0.87299 1.90815 1.73054 1.61313 1.14522 1.19984 0.97301 1.01422 0.93211 1.21318 0.96493 0.95617 0.92007 1.20358 0.96917 1.00756 1.00516 1.20272 0.97012 0.94782 0.91623 1.19603 1.00703 1.06747 0.95942 1.22743 0.99088 0.99640 0.85566 1.46586 1.22398 1.34813 1.09349 0.71195 1.77889 1.02444 1.10435 1.18533 1.21503 0.94555 0.95770 0.90258 1.22218 0.94041 0.98168 1.00386 1.22698 0.96255 0.97402 0.99975 1.23213 0.98140 0.94147 1.01056 1.21802 0.91746 0.85766 0.95394 0.93640 0.91940 0.93174 0.95875 0.91039 0.91049 0.76748 0.84886 0.85331 0.85606 0.79395 0.91178 0.92040 0.92235 0.92313 0.92163 0.90799 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -27.76 12.93 55.49 0.72 -27.04 16 2 C -0.03 -0.72 5.08 -17.43 -0.09 -0.81 16 3 Si 1.07 25.59 30.00 -169.99 -5.10 20.49 16 4 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 5 H -0.29 -6.65 7.11 56.52 0.40 -6.25 16 6 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 7 C -0.33 -9.20 9.74 -15.06 -0.15 -9.35 16 8 H 0.06 1.79 7.96 -52.49 -0.42 1.37 16 9 N -0.60 -14.78 2.93 -161.30 -0.47 -15.25 16 10 C 0.15 3.54 5.27 -2.72 -0.01 3.52 16 11 C -0.13 -2.77 5.77 -24.87 -0.14 -2.92 16 12 C 0.17 3.08 0.74 -129.37 -0.10 2.99 16 13 N -0.70 -11.95 5.18 -46.48 -0.24 -12.19 16 14 C 0.56 9.90 6.92 -12.64 -0.09 9.82 16 15 O -0.52 -10.84 14.20 5.24 0.07 -10.76 16 16 C -0.11 -1.72 6.05 -102.74 -0.62 -2.34 16 17 C -0.03 -0.38 9.50 -39.20 -0.37 -0.75 16 18 C -0.17 -1.60 9.82 -40.19 -0.39 -1.99 16 19 C -0.02 -0.15 10.02 -39.46 -0.40 -0.54 16 20 C -0.22 -2.40 6.34 -105.21 -0.67 -3.06 16 21 C 0.09 0.65 12.08 -16.58 -0.20 0.45 16 22 N -0.43 -3.97 7.18 30.86 0.22 -3.75 16 23 H 0.44 2.30 8.96 -182.69 -1.64 0.66 16 24 N -0.27 -4.08 12.24 34.35 0.42 -3.66 16 25 C 0.14 2.07 7.27 -80.99 -0.59 1.48 16 26 C -0.11 -1.86 5.25 -25.79 -0.14 -2.00 16 27 C -0.13 -1.93 6.88 -24.07 -0.17 -2.10 16 28 C -0.13 -2.32 6.38 -23.77 -0.15 -2.47 16 29 C 0.16 3.28 3.59 -65.61 -0.24 3.05 16 30 H 0.05 0.93 7.98 -51.93 -0.41 0.52 16 31 H 0.27 8.17 6.03 -40.82 -0.25 7.93 16 32 H 0.05 1.34 7.92 -51.93 -0.41 0.93 16 33 H 0.02 0.60 6.82 -51.93 -0.35 0.25 16 34 H 0.07 1.53 6.82 -51.93 -0.35 1.17 16 35 H 0.07 1.45 7.65 -51.93 -0.40 1.05 16 36 H 0.40 5.98 6.54 -40.82 -0.27 5.72 16 37 H 0.13 1.37 6.38 -52.49 -0.33 1.03 16 38 H 0.13 0.90 8.06 -52.48 -0.42 0.48 16 39 H 0.13 0.69 8.06 -52.49 -0.42 0.27 16 40 H 0.19 0.42 8.06 -52.48 -0.42 0.00 16 41 H 0.07 1.23 7.41 -51.93 -0.38 0.84 16 42 H 0.06 1.06 7.40 -51.93 -0.38 0.67 16 43 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 44 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 45 H 0.06 1.09 8.14 -51.93 -0.42 0.66 16 46 H 0.07 1.48 8.09 -51.93 -0.42 1.06 16 LS Contribution 367.25 15.07 5.53 5.53 Total: -1.00 -37.00 367.25 -10.71 -47.71 By element: Atomic # 1 Polarization: 13.30 SS G_CDS: -7.36 Total: 5.95 kcal Atomic # 6 Polarization: -2.52 SS G_CDS: -4.51 Total: -7.02 kcal Atomic # 7 Polarization: -62.54 SS G_CDS: 0.65 Total: -61.89 kcal Atomic # 8 Polarization: -10.84 SS G_CDS: 0.07 Total: -10.76 kcal Atomic # 14 Polarization: 25.59 SS G_CDS: -5.10 Total: 20.49 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -37.00 -10.71 -47.71 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000992083052.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 138.772 kcal (2) G-P(sol) polarization free energy of solvation -37.001 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 101.771 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.707 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.708 kcal (6) G-S(sol) free energy of system = (1) + (5) 91.064 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds