Wall clock time and date at job start Sat Apr 11 2020 06:03:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31626 * 1 3 3 Si 1.86793 * 120.00029 * 2 1 4 4 H 1.48503 * 109.47338 * 245.67052 * 3 2 1 5 5 H 1.48503 * 109.47270 * 5.66823 * 3 2 1 6 6 H 1.48496 * 109.47527 * 125.66734 * 3 2 1 7 7 C 1.38814 * 119.99902 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00292 * 350.03242 * 7 2 1 9 9 N 1.36940 * 119.99541 * 170.02538 * 7 2 1 10 10 C 1.49289 * 127.10720 * 340.97943 * 9 7 2 11 11 C 1.56134 * 106.55657 * 188.52684 * 10 9 7 12 12 C 1.52134 * 100.70894 * 23.81077 * 11 10 9 13 13 N 1.46502 * 111.49068 * 73.90405 * 12 11 10 14 14 C 1.34773 * 120.00387 * 71.47651 * 13 12 11 15 15 O 1.21646 * 119.99997 * 359.97438 * 14 13 12 16 16 C 1.47162 * 120.00121 * 180.02562 * 14 13 12 17 17 C 1.38594 * 120.72418 * 359.71635 * 16 14 13 18 18 C 1.38924 * 121.36094 * 179.69732 * 17 16 14 19 19 C 1.35825 * 122.59994 * 0.61965 * 18 17 16 20 20 C 1.40847 * 120.55255 * 359.67972 * 19 18 17 21 21 C 1.38428 * 134.89644 * 180.02562 * 20 19 18 22 22 N 1.33887 * 107.84101 * 179.97438 * 21 20 19 23 23 H 0.97000 * 125.01578 * 180.02562 * 22 21 20 24 24 N 1.39976 * 109.96519 * 359.97438 * 22 21 20 25 25 C 1.31475 * 109.01793 * 359.97438 * 24 22 21 26 26 C 1.51374 * 121.50028 * 208.87994 * 12 11 10 27 27 C 1.55694 * 104.22527 * 141.91817 * 26 12 11 28 28 C 1.56278 * 105.93601 * 352.17467 * 27 26 12 29 29 C 1.42703 * 127.09892 * 161.28612 * 9 7 2 30 30 H 1.08999 * 108.16987 * 256.53280 * 29 9 7 31 31 H 0.96997 * 119.99753 * 185.10541 * 1 2 3 32 32 H 1.09005 * 110.04304 * 307.91398 * 10 9 7 33 33 H 1.08992 * 110.05244 * 69.39026 * 10 9 7 34 34 H 1.09006 * 111.38311 * 265.88191 * 11 10 9 35 35 H 1.09000 * 111.05236 * 141.60684 * 11 10 9 36 36 H 0.97004 * 119.99361 * 251.46925 * 13 12 11 37 37 H 1.08004 * 119.31948 * 359.97438 * 17 16 14 38 38 H 1.08005 * 118.69880 * 180.29652 * 18 17 16 39 39 H 1.07994 * 119.72655 * 179.69198 * 19 18 17 40 40 H 1.08000 * 126.07635 * 359.96653 * 21 20 19 41 41 H 1.09000 * 111.08221 * 23.01745 * 26 12 11 42 42 H 1.09000 * 110.19827 * 260.38482 * 26 12 11 43 43 H 1.08996 * 110.15535 * 233.05128 * 27 26 12 44 44 H 1.09000 * 110.21515 * 111.32222 * 27 26 12 45 45 H 1.09001 * 110.96945 * 217.62429 * 28 27 26 46 46 H 1.08996 * 110.97802 * 93.86158 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.9973 1.7580 -1.2757 5 1 1.2912 2.7430 0.1383 6 1 3.2047 1.6383 1.1374 7 6 2.0103 -1.2022 0.0005 8 1 1.4826 -2.1303 0.1628 9 7 3.3642 -1.2111 -0.2049 10 6 4.1890 -0.1295 -0.8201 11 6 5.6200 -0.7208 -1.0208 12 6 5.3066 -2.2087 -1.0712 13 7 4.6780 -2.5820 -2.3407 14 6 5.4062 -2.5967 -3.4747 15 8 6.5854 -2.2994 -3.4442 16 6 4.7745 -2.9711 -4.7500 17 6 3.4334 -3.3171 -4.8013 18 6 2.8222 -3.6667 -5.9989 19 6 3.4930 -3.7038 -7.1793 20 6 4.8616 -3.3757 -7.2357 21 6 5.8108 -3.3136 -8.2414 22 7 6.9693 -2.9324 -7.6890 23 1 7.8019 -2.8090 -8.1712 24 7 6.8014 -2.7373 -6.3131 25 6 5.5514 -2.9905 -5.9938 26 6 6.3137 -3.2449 -0.6200 27 6 5.4538 -4.3281 0.0952 28 6 4.0093 -3.7386 0.1853 29 6 4.2771 -2.2589 0.1195 30 1 4.8178 -1.9716 1.0212 31 1 -0.4850 -0.8367 0.0748 32 1 3.7655 0.1624 -1.7812 33 1 4.2332 0.7317 -0.1536 34 1 6.2696 -0.4841 -0.1780 35 1 6.0570 -0.3789 -1.9590 36 1 3.7376 -2.8188 -2.3651 37 1 2.8504 -3.3104 -3.8922 38 1 1.7733 -3.9242 -5.9900 39 1 2.9727 -3.9871 -8.0823 40 1 5.6461 -3.5336 -9.2858 41 1 7.0358 -2.8139 0.0735 42 1 6.8248 -3.6733 -1.4821 43 1 5.8449 -4.5185 1.0945 44 1 5.4479 -5.2493 -0.4873 45 1 3.5364 -4.0078 1.1298 46 1 3.4020 -4.0631 -0.6596 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000992083053.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:03:11 Heat of formation + Delta-G solvation = 113.717560 kcal Electronic energy + Delta-G solvation = -30477.620046 eV Core-core repulsion = 26563.357527 eV Total energy + Delta-G solvation = -3914.262519 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.35941 -40.56188 -38.25363 -36.77842 -34.66448 -33.14416 -32.27314 -31.93316 -30.85949 -29.96458 -28.85895 -27.16299 -26.25054 -24.76527 -23.43579 -22.43383 -21.91562 -21.19033 -20.07930 -19.35916 -18.84860 -18.24550 -17.41108 -17.08819 -16.72398 -15.75343 -15.30012 -15.16271 -15.00224 -14.84217 -14.56179 -14.12075 -13.91682 -13.86636 -13.55435 -13.27827 -12.90968 -12.64693 -12.17673 -12.02600 -11.88195 -11.84557 -11.75531 -11.50572 -11.14792 -10.96321 -10.86151 -10.66463 -10.59122 -10.35611 -10.26636 -10.02819 -9.74709 -9.39107 -9.16765 -9.03356 -8.97946 -8.69613 -8.49265 -7.73541 -7.05066 -6.26790 -3.28830 0.24537 1.69183 2.14234 2.51017 3.19415 3.45443 3.51480 3.52470 3.71287 3.98874 4.11194 4.36938 4.42971 4.61069 4.81942 4.95699 5.04953 5.07723 5.15243 5.20751 5.29061 5.34742 5.46294 5.54370 5.60236 5.64295 5.74511 5.85134 5.91873 5.93560 6.11210 6.18392 6.20891 6.24413 6.26927 6.33652 6.41404 6.42261 6.45317 6.50296 6.67662 6.69258 6.77715 6.87005 6.89602 7.15368 7.49429 7.74516 8.03615 8.31498 8.71109 9.00682 9.60025 10.27367 11.19598 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.012351 B = 0.004012 C = 0.003609 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2266.390824 B = 6976.654283 C = 7757.475028 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C -0.017 4.017 3 Si 1.072 2.928 4 H -0.287 1.287 5 H -0.301 1.301 6 H -0.295 1.295 7 C -0.321 4.321 8 H 0.077 0.923 9 N -0.594 5.594 10 C 0.110 3.890 11 C -0.123 4.123 12 C 0.134 3.866 13 N -0.691 5.691 14 C 0.557 3.443 15 O -0.530 6.530 16 C -0.114 4.114 17 C -0.029 4.029 18 C -0.163 4.163 19 C -0.019 4.019 20 C -0.219 4.219 21 C 0.085 3.915 22 N -0.433 5.433 23 H 0.443 0.557 24 N -0.269 5.269 25 C 0.138 3.862 26 C -0.111 4.111 27 C -0.117 4.117 28 C -0.112 4.112 29 C 0.158 3.842 30 H 0.028 0.972 31 H 0.261 0.739 32 H 0.053 0.947 33 H 0.035 0.965 34 H 0.075 0.925 35 H 0.075 0.925 36 H 0.402 0.598 37 H 0.135 0.865 38 H 0.129 0.871 39 H 0.126 0.874 40 H 0.189 0.811 41 H 0.072 0.928 42 H 0.072 0.928 43 H 0.063 0.937 44 H 0.060 0.940 45 H 0.065 0.935 46 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.633 -10.290 -15.225 21.231 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.217 4.217 3 Si 0.906 3.094 4 H -0.215 1.215 5 H -0.229 1.229 6 H -0.223 1.223 7 C -0.448 4.448 8 H 0.095 0.905 9 N -0.319 5.319 10 C -0.013 4.013 11 C -0.162 4.162 12 C 0.046 3.954 13 N -0.344 5.344 14 C 0.344 3.656 15 O -0.408 6.408 16 C -0.121 4.121 17 C -0.052 4.052 18 C -0.183 4.183 19 C -0.039 4.039 20 C -0.229 4.229 21 C -0.072 4.072 22 N -0.133 5.133 23 H 0.287 0.713 24 N -0.094 5.094 25 C -0.020 4.020 26 C -0.150 4.150 27 C -0.155 4.155 28 C -0.150 4.150 29 C 0.048 3.952 30 H 0.045 0.955 31 H 0.071 0.929 32 H 0.071 0.929 33 H 0.052 0.948 34 H 0.094 0.906 35 H 0.094 0.906 36 H 0.239 0.761 37 H 0.153 0.847 38 H 0.147 0.853 39 H 0.144 0.856 40 H 0.205 0.795 41 H 0.091 0.909 42 H 0.090 0.910 43 H 0.081 0.919 44 H 0.079 0.921 45 H 0.084 0.916 46 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 12.343 -8.037 -14.740 20.838 hybrid contribution -0.686 -1.903 -0.586 2.106 sum 11.657 -9.941 -15.326 21.670 Atomic orbital electron populations 1.70933 1.05637 1.29545 1.50949 1.25863 0.96539 1.01030 0.98261 0.83772 0.73280 0.75896 0.76456 1.21483 1.22930 1.22281 1.20091 0.80243 0.95195 1.49313 0.90518 1.43947 1.03676 1.14245 1.70078 1.22788 0.89774 0.92001 0.96782 1.22489 0.96993 0.94528 1.02206 1.21484 0.95690 0.93206 0.84973 1.45620 1.13662 1.68805 1.06264 1.17859 0.86515 0.78115 0.83121 1.90786 1.15272 1.48379 1.86376 1.19989 0.93016 1.08667 0.90396 1.21379 0.92630 0.92305 0.98895 1.20387 1.00681 1.05177 0.92012 1.20263 0.90903 0.94711 0.98067 1.19608 0.96102 1.14847 0.92372 1.22720 0.86284 0.99183 0.99009 1.46569 1.10688 1.48375 1.07687 0.71286 1.77865 1.16897 1.26543 0.88138 1.21509 0.90473 0.96865 0.93147 1.21892 0.96951 0.95992 1.00186 1.22823 0.94732 0.97958 0.99984 1.21800 0.96023 0.95445 1.01756 1.20821 0.90349 0.90310 0.93671 0.95482 0.92915 0.92931 0.94785 0.90647 0.90585 0.76109 0.84715 0.85295 0.85649 0.79462 0.90935 0.90975 0.91853 0.92140 0.91592 0.91740 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.53 13.70 55.49 0.76 -27.77 16 2 C -0.02 -0.49 5.50 -17.43 -0.10 -0.58 16 3 Si 1.07 27.03 24.60 -169.99 -4.18 22.85 16 4 H -0.29 -6.81 5.61 56.52 0.32 -6.49 16 5 H -0.30 -7.78 7.11 56.52 0.40 -7.37 16 6 H -0.29 -7.20 6.83 56.52 0.39 -6.82 16 7 C -0.32 -8.73 10.58 -15.06 -0.16 -8.89 16 8 H 0.08 2.18 8.06 -52.49 -0.42 1.76 16 9 N -0.59 -13.96 2.98 -162.75 -0.49 -14.44 16 10 C 0.11 2.45 4.50 -0.81 0.00 2.45 16 11 C -0.12 -2.36 6.20 -25.49 -0.16 -2.51 16 12 C 0.13 2.42 0.38 -130.64 -0.05 2.37 16 13 N -0.69 -12.20 4.35 -47.65 -0.21 -12.41 16 14 C 0.56 10.21 7.11 -12.64 -0.09 10.12 16 15 O -0.53 -11.09 14.47 5.24 0.08 -11.02 16 16 C -0.11 -1.85 6.05 -102.74 -0.62 -2.48 16 17 C -0.03 -0.40 9.50 -39.20 -0.37 -0.77 16 18 C -0.16 -1.80 9.83 -40.19 -0.39 -2.20 16 19 C -0.02 -0.19 10.02 -39.46 -0.40 -0.58 16 20 C -0.22 -2.56 6.34 -105.21 -0.67 -3.22 16 21 C 0.09 0.68 12.08 -16.59 -0.20 0.48 16 22 N -0.43 -4.17 7.18 30.86 0.22 -3.94 16 23 H 0.44 2.44 8.96 -182.69 -1.64 0.80 16 24 N -0.27 -4.20 12.24 34.35 0.42 -3.78 16 25 C 0.14 2.18 7.27 -80.99 -0.59 1.59 16 26 C -0.11 -1.77 6.06 -26.12 -0.16 -1.92 16 27 C -0.12 -1.66 6.93 -23.54 -0.16 -1.82 16 28 C -0.11 -1.87 6.45 -26.21 -0.17 -2.04 16 29 C 0.16 3.12 2.65 -68.72 -0.18 2.93 16 30 H 0.03 0.56 7.96 -51.93 -0.41 0.15 16 31 H 0.26 7.88 8.73 -40.82 -0.36 7.52 16 32 H 0.05 1.24 6.85 -51.93 -0.36 0.88 16 33 H 0.03 0.79 4.41 -51.93 -0.23 0.56 16 34 H 0.07 1.31 8.14 -51.93 -0.42 0.88 16 35 H 0.08 1.50 7.19 -51.93 -0.37 1.12 16 36 H 0.40 6.96 5.79 -40.82 -0.24 6.73 16 37 H 0.14 1.73 6.38 -52.48 -0.33 1.40 16 38 H 0.13 1.12 8.06 -52.48 -0.42 0.70 16 39 H 0.13 0.81 8.06 -52.49 -0.42 0.39 16 40 H 0.19 0.53 8.06 -52.49 -0.42 0.10 16 41 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 42 H 0.07 1.22 6.85 -51.93 -0.36 0.87 16 43 H 0.06 0.81 8.14 -51.93 -0.42 0.38 16 44 H 0.06 0.80 8.14 -51.93 -0.42 0.37 16 45 H 0.07 1.10 8.14 -51.93 -0.42 0.67 16 46 H 0.06 1.08 7.28 -51.93 -0.38 0.70 16 LS Contribution 359.86 15.07 5.42 5.42 Total: -1.00 -36.42 359.86 -9.81 -46.24 By element: Atomic # 1 Polarization: 13.32 SS G_CDS: -7.37 Total: 5.95 kcal Atomic # 6 Polarization: -2.61 SS G_CDS: -4.47 Total: -7.08 kcal Atomic # 7 Polarization: -63.06 SS G_CDS: 0.71 Total: -62.35 kcal Atomic # 8 Polarization: -11.09 SS G_CDS: 0.08 Total: -11.02 kcal Atomic # 14 Polarization: 27.03 SS G_CDS: -4.18 Total: 22.85 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -36.42 -9.81 -46.24 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000992083053.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 159.954 kcal (2) G-P(sol) polarization free energy of solvation -36.422 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 123.532 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.814 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.236 kcal (6) G-S(sol) free energy of system = (1) + (5) 113.718 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds