Wall clock time and date at job start Sat Apr 11 2020 06:03:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31613 * 1 3 3 Si 1.86804 * 119.99723 * 2 1 4 4 H 1.48500 * 109.46989 * 274.95660 * 3 2 1 5 5 H 1.48496 * 109.47362 * 34.95460 * 3 2 1 6 6 H 1.48498 * 109.47198 * 154.95924 * 3 2 1 7 7 C 1.38806 * 120.00552 * 179.97438 * 2 1 3 8 8 H 1.08008 * 120.00597 * 185.71142 * 7 2 1 9 9 N 1.36943 * 120.00107 * 5.72031 * 7 2 1 10 10 C 1.49292 * 127.09566 * 352.77785 * 9 7 2 11 11 C 1.56237 * 106.50811 * 188.64470 * 10 9 7 12 12 C 1.52138 * 100.80751 * 23.45255 * 11 10 9 13 13 N 1.46499 * 111.08846 * 73.95324 * 12 11 10 14 14 C 1.34777 * 119.99308 * 71.70123 * 13 12 11 15 15 O 1.21596 * 120.00573 * 359.97438 * 14 13 12 16 16 C 1.47474 * 119.99603 * 179.97438 * 14 13 12 17 17 C 1.38999 * 120.29701 * 359.72681 * 16 14 13 18 18 C 1.38504 * 120.36701 * 179.73632 * 17 16 14 19 19 C 1.37825 * 120.78669 * 0.54067 * 18 17 16 20 20 C 1.39219 * 120.20330 * 359.71977 * 19 18 17 21 21 N 1.37219 * 133.65758 * 179.97438 * 20 19 18 22 22 H 0.97002 * 125.98243 * 359.97438 * 21 20 19 23 23 N 1.40023 * 108.03628 * 180.02562 * 21 20 19 24 24 C 1.30270 * 109.70175 * 359.97438 * 23 21 20 25 25 C 1.40674 * 119.78281 * 0.02562 * 20 19 18 26 26 C 1.51219 * 122.11656 * 208.79606 * 12 11 10 27 27 C 1.55760 * 104.60970 * 141.29663 * 26 12 11 28 28 C 1.56279 * 105.90607 * 352.70257 * 27 26 12 29 29 C 1.42702 * 127.10588 * 172.76296 * 9 7 2 30 30 H 1.09008 * 108.16669 * 255.88028 * 29 9 7 31 31 H 0.97000 * 120.00582 * 0.02562 * 1 2 3 32 32 H 1.09004 * 110.05491 * 307.90760 * 10 9 7 33 33 H 1.09000 * 110.05272 * 69.33405 * 10 9 7 34 34 H 1.08999 * 111.15090 * 141.33633 * 11 10 9 35 35 H 1.08999 * 111.15233 * 265.52507 * 11 10 9 36 36 H 0.96999 * 120.00456 * 251.69973 * 13 12 11 37 37 H 1.08002 * 119.81693 * 359.97438 * 17 16 14 38 38 H 1.07997 * 119.60668 * 180.26496 * 18 17 16 39 39 H 1.08009 * 119.89954 * 179.73819 * 19 18 17 40 40 H 1.08002 * 125.64380 * 180.02562 * 24 23 21 41 41 H 1.09004 * 110.40652 * 260.04309 * 26 12 11 42 42 H 1.08998 * 110.41463 * 22.36656 * 26 12 11 43 43 H 1.08994 * 110.15281 * 233.60136 * 27 26 12 44 44 H 1.08998 * 110.19080 * 111.81915 * 27 26 12 45 45 H 1.08994 * 110.97230 * 217.64941 * 28 27 26 46 46 H 1.08996 * 110.97603 * 93.91430 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.3928 2.1070 -1.3948 5 1 1.5038 2.6202 0.8021 6 1 3.5961 1.4123 0.5926 7 6 2.0103 -1.2020 0.0005 8 1 3.0863 -1.2043 0.0936 9 7 1.3308 -2.3852 -0.1171 10 6 -0.1495 -2.5785 -0.1047 11 6 -0.3953 -4.1203 -0.0462 12 6 0.9157 -4.5954 0.5621 13 7 0.9806 -4.2756 1.9903 14 6 0.2129 -4.9519 2.8677 15 8 -0.5338 -5.8271 2.4739 16 6 0.2786 -4.6305 4.3055 17 6 1.1342 -3.6351 4.7631 18 6 1.1930 -3.3283 6.1125 19 6 0.4160 -4.0086 7.0251 20 6 -0.4469 -5.0144 6.5985 21 7 -1.3232 -5.8485 7.2460 22 1 -1.4927 -5.8667 8.2009 23 7 -1.9289 -6.6697 6.2871 24 6 -1.4683 -6.3770 5.1042 25 6 -0.5235 -5.3357 5.2311 26 6 1.4845 -5.9669 0.2757 27 6 3.0207 -5.7383 0.1574 28 6 3.2278 -4.1898 0.1998 29 6 1.8914 -3.6877 -0.2773 30 1 1.7693 -3.9845 -1.3190 31 1 -0.4851 0.8400 -0.0004 32 1 -0.5819 -2.0976 0.7728 33 1 -0.5882 -2.1636 -1.0121 34 1 -1.2389 -4.3598 0.6013 35 1 -0.5391 -4.5338 -1.0444 36 1 1.5760 -3.5773 2.3045 37 1 1.7536 -3.0954 4.0622 38 1 1.8590 -2.5498 6.4540 39 1 0.4764 -3.7604 8.0746 40 1 -1.7605 -6.8527 4.1797 41 1 1.2644 -6.6488 1.0971 42 1 1.0830 -6.3574 -0.6594 43 1 3.3887 -6.1408 -0.7863 44 1 3.5367 -6.2093 0.9940 45 1 4.0242 -3.8840 -0.4786 46 1 3.4318 -3.8511 1.2155 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000992089137.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:03:18 Heat of formation + Delta-G solvation = 79.621332 kcal Electronic energy + Delta-G solvation = -30516.459694 eV Core-core repulsion = 26600.718652 eV Total energy + Delta-G solvation = -3915.741042 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.58716 -41.83053 -39.56794 -37.85075 -36.12128 -34.47447 -33.71904 -33.38208 -31.70698 -30.93368 -30.32352 -28.50732 -27.30894 -25.93250 -25.15862 -23.50026 -22.84455 -22.26775 -21.88066 -21.20660 -20.13620 -19.30961 -18.31293 -17.88063 -17.38060 -17.31469 -16.41088 -16.32472 -16.03862 -15.85914 -15.80659 -15.64710 -15.49212 -15.07861 -14.86501 -14.42220 -14.11957 -14.02984 -13.51918 -13.02363 -12.99190 -12.90106 -12.81812 -12.79200 -12.70120 -12.59539 -12.12090 -12.07485 -12.02712 -11.97959 -11.77664 -11.52469 -11.36813 -11.30868 -11.03582 -10.69736 -10.57105 -9.91742 -9.71075 -9.07296 -8.82118 -7.81791 -5.16604 -0.52886 0.36861 1.42553 1.50443 1.52534 1.60513 1.73943 1.94515 2.25410 2.53632 2.87991 3.12269 3.40126 3.55271 3.65576 3.78338 3.86104 3.93253 4.01030 4.02497 4.14135 4.29708 4.33894 4.41309 4.45829 4.59335 4.62234 4.65527 4.77059 4.84682 4.87096 4.98132 5.01638 5.11044 5.15429 5.22484 5.26376 5.32432 5.33947 5.39819 5.52110 5.61160 5.62614 5.70240 5.72401 5.83038 6.21412 6.30709 6.54231 6.69098 7.07668 7.32478 7.80472 8.53719 9.31265 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.011642 B = 0.004063 C = 0.003459 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2404.461676 B = 6889.477342 C = 8093.296140 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.950 5.950 2 C -0.059 4.059 3 Si 0.970 3.030 4 H -0.295 1.295 5 H -0.301 1.301 6 H -0.261 1.261 7 C -0.232 4.232 8 H 0.091 0.909 9 N -0.596 5.596 10 C 0.193 3.807 11 C -0.129 4.129 12 C 0.139 3.861 13 N -0.681 5.681 14 C 0.553 3.447 15 O -0.566 6.566 16 C -0.078 4.078 17 C -0.114 4.114 18 C -0.072 4.072 19 C -0.106 4.106 20 C 0.110 3.890 21 N -0.496 5.496 22 H 0.456 0.544 23 N -0.269 5.269 24 C 0.076 3.924 25 C -0.157 4.157 26 C -0.107 4.107 27 C -0.103 4.103 28 C -0.109 4.109 29 C 0.147 3.853 30 H 0.017 0.983 31 H 0.244 0.756 32 H 0.022 0.978 33 H 0.003 0.997 34 H 0.058 0.942 35 H 0.079 0.921 36 H 0.403 0.597 37 H 0.136 0.864 38 H 0.173 0.827 39 H 0.170 0.830 40 H 0.195 0.805 41 H 0.065 0.935 42 H 0.080 0.920 43 H 0.083 0.917 44 H 0.077 0.923 45 H 0.072 0.928 46 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.653 -10.593 13.106 17.774 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.599 5.599 2 C -0.253 4.253 3 Si 0.800 3.200 4 H -0.223 1.223 5 H -0.228 1.228 6 H -0.185 1.185 7 C -0.360 4.360 8 H 0.109 0.891 9 N -0.319 5.319 10 C 0.069 3.931 11 C -0.168 4.168 12 C 0.051 3.949 13 N -0.331 5.331 14 C 0.341 3.659 15 O -0.447 6.447 16 C -0.084 4.084 17 C -0.134 4.134 18 C -0.093 4.093 19 C -0.127 4.127 20 C -0.007 4.007 21 N -0.214 5.214 22 H 0.304 0.696 23 N -0.085 5.085 24 C -0.118 4.118 25 C -0.165 4.165 26 C -0.146 4.146 27 C -0.141 4.141 28 C -0.148 4.148 29 C 0.038 3.962 30 H 0.034 0.966 31 H 0.054 0.946 32 H 0.040 0.960 33 H 0.022 0.978 34 H 0.077 0.923 35 H 0.098 0.902 36 H 0.240 0.760 37 H 0.154 0.846 38 H 0.190 0.810 39 H 0.187 0.813 40 H 0.212 0.788 41 H 0.083 0.917 42 H 0.098 0.902 43 H 0.102 0.898 44 H 0.095 0.905 45 H 0.091 0.909 46 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 4.287 -11.742 13.487 18.388 hybrid contribution 0.302 2.085 -0.345 2.134 sum 4.589 -9.657 13.142 16.942 Atomic orbital electron populations 1.70147 1.06504 1.25150 1.58080 1.25563 0.96234 1.00771 1.02686 0.85177 0.78229 0.79779 0.76858 1.22301 1.22781 1.18508 1.19408 0.91358 0.83096 1.42144 0.89110 1.43775 1.01741 1.01422 1.84943 1.21626 0.83544 0.90337 0.97628 1.22649 0.97303 0.96362 1.00464 1.21508 0.96475 0.96419 0.80473 1.45619 1.42974 1.38193 1.06352 1.18368 0.79878 0.81484 0.86125 1.90657 1.40179 1.33397 1.80437 1.19507 0.98801 0.98446 0.91644 1.21476 0.98054 0.96089 0.97812 1.21339 0.97980 0.98810 0.91163 1.20671 0.95508 0.94253 1.02309 1.19087 0.94932 0.95280 0.91412 1.46047 1.35424 1.30290 1.09641 0.69600 1.76700 1.18705 1.14738 0.98312 1.24154 0.94971 0.96112 0.96600 1.18867 1.02798 1.01516 0.93361 1.21872 0.96148 0.94399 1.02195 1.22766 0.94336 0.93968 1.03034 1.21845 0.95761 0.95806 1.01349 1.21049 0.94349 0.84940 0.95832 0.96568 0.94633 0.95958 0.97844 0.92291 0.90246 0.75970 0.84581 0.80996 0.81275 0.78796 0.91664 0.90161 0.89826 0.90459 0.90913 0.91553 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -55.58 10.61 21.65 0.23 -55.35 16 2 C -0.06 -3.19 5.49 84.86 0.47 -2.72 16 3 Si 0.97 43.52 29.56 68.60 2.03 45.55 16 4 H -0.30 -13.44 7.11 99.48 0.71 -12.74 16 5 H -0.30 -13.81 7.11 99.48 0.71 -13.11 16 6 H -0.26 -10.73 7.11 99.48 0.71 -10.02 16 7 C -0.23 -11.85 10.28 84.03 0.86 -10.99 16 8 H 0.09 4.35 7.84 -2.91 -0.02 4.33 16 9 N -0.60 -28.22 3.12 -668.56 -2.09 -30.31 16 10 C 0.19 9.50 5.29 86.96 0.46 9.96 16 11 C -0.13 -5.16 6.19 31.43 0.19 -4.97 16 12 C 0.14 4.87 0.40 4.33 0.00 4.87 16 13 N -0.68 -23.22 4.34 -422.83 -1.84 -25.06 16 14 C 0.55 19.17 7.09 86.68 0.61 19.79 16 15 O -0.57 -21.73 13.09 -4.02 -0.05 -21.78 16 16 C -0.08 -2.36 5.90 -19.90 -0.12 -2.47 16 17 C -0.11 -2.79 9.52 22.52 0.21 -2.58 16 18 C -0.07 -1.28 10.00 22.24 0.22 -1.06 16 19 C -0.11 -1.77 10.06 22.41 0.23 -1.54 16 20 C 0.11 2.55 7.32 39.13 0.29 2.84 16 21 N -0.50 -10.51 7.45 -51.56 -0.38 -10.89 16 22 H 0.46 5.99 8.96 -213.37 -1.91 4.08 16 23 N -0.27 -7.38 12.58 -56.44 -0.71 -8.09 16 24 C 0.08 2.29 11.23 85.65 0.96 3.25 16 25 C -0.16 -4.62 6.00 -21.20 -0.13 -4.75 16 26 C -0.11 -3.11 6.04 30.97 0.19 -2.93 16 27 C -0.10 -2.48 6.94 32.69 0.23 -2.26 16 28 C -0.11 -3.21 6.46 30.93 0.20 -3.01 16 29 C 0.15 5.56 2.64 46.48 0.12 5.68 16 30 H 0.02 0.67 7.94 -2.38 -0.02 0.65 16 31 H 0.24 14.11 8.31 -92.71 -0.77 13.34 16 32 H 0.02 1.23 7.32 -2.38 -0.02 1.22 16 33 H 0.00 0.18 7.82 -2.39 -0.02 0.16 16 34 H 0.06 2.47 7.17 -2.39 -0.02 2.46 16 35 H 0.08 2.93 8.14 -2.39 -0.02 2.91 16 36 H 0.40 13.55 5.83 -92.71 -0.54 13.01 16 37 H 0.14 3.23 6.38 -2.91 -0.02 3.22 16 38 H 0.17 1.85 8.06 -2.91 -0.02 1.82 16 39 H 0.17 1.45 8.06 -2.91 -0.02 1.42 16 40 H 0.20 5.93 6.95 -2.91 -0.02 5.91 16 41 H 0.06 2.00 6.86 -2.39 -0.02 1.98 16 42 H 0.08 2.18 8.14 -2.39 -0.02 2.16 16 43 H 0.08 1.72 8.14 -2.39 -0.02 1.70 16 44 H 0.08 1.64 8.14 -2.39 -0.02 1.62 16 45 H 0.07 2.04 8.14 -2.39 -0.02 2.02 16 46 H 0.07 1.93 7.38 -2.39 -0.02 1.91 16 Total: -1.00 -69.54 364.50 0.78 -68.77 By element: Atomic # 1 Polarization: 31.46 SS G_CDS: -1.42 Total: 30.05 kcal Atomic # 6 Polarization: 2.11 SS G_CDS: 5.00 Total: 7.11 kcal Atomic # 7 Polarization: -124.91 SS G_CDS: -4.79 Total: -129.69 kcal Atomic # 8 Polarization: -21.73 SS G_CDS: -0.05 Total: -21.78 kcal Atomic # 14 Polarization: 43.52 SS G_CDS: 2.03 Total: 45.55 kcal Total: -69.54 0.78 -68.77 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000992089137.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 148.389 kcal (2) G-P(sol) polarization free energy of solvation -69.545 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 78.844 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.777 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.767 kcal (6) G-S(sol) free energy of system = (1) + (5) 79.621 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds