Wall clock time and date at job start Sat Apr 11 2020 06:03:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31613 * 1 3 3 Si 1.86805 * 119.99828 * 2 1 4 4 H 1.48505 * 109.47194 * 240.00028 * 3 2 1 5 5 H 1.48497 * 109.47085 * 0.02562 * 3 2 1 6 6 H 1.48499 * 109.47141 * 120.00156 * 3 2 1 7 7 C 1.38809 * 120.00214 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99967 * 207.01828 * 7 2 1 9 9 N 1.36932 * 119.99875 * 27.01966 * 7 2 1 10 10 C 1.47367 * 125.58260 * 13.59012 * 9 7 2 11 11 C 1.55129 * 104.69362 * 155.19594 * 10 9 7 12 12 C 1.54923 * 101.65131 * 37.40603 * 11 10 9 13 13 N 1.46495 * 112.77503 * 86.26423 * 12 11 10 14 14 C 1.34780 * 120.00477 * 64.06427 * 13 12 11 15 15 O 1.21600 * 119.99702 * 359.97438 * 14 13 12 16 16 C 1.47465 * 120.00307 * 179.97438 * 14 13 12 17 17 C 1.39008 * 120.29631 * 359.97438 * 16 14 13 18 18 C 1.38496 * 120.36898 * 179.97438 * 17 16 14 19 19 C 1.37827 * 120.79315 * 359.97438 * 18 17 16 20 20 C 1.39218 * 120.19210 * 0.02562 * 19 18 17 21 21 N 1.37227 * 133.64422 * 179.97438 * 20 19 18 22 22 H 0.96994 * 125.98645 * 359.97438 * 21 20 19 23 23 N 1.40031 * 108.03013 * 180.02562 * 21 20 19 24 24 C 1.30272 * 109.70323 * 359.97438 * 23 21 20 25 25 C 1.40678 * 119.79322 * 359.76761 * 20 19 18 26 26 C 1.55238 * 108.83741 * 212.71476 * 12 11 10 27 27 C 1.54225 * 106.81902 * 113.67525 * 26 12 11 28 28 C 1.54757 * 104.15492 * 334.35414 * 27 26 12 29 29 C 1.46984 * 125.57834 * 193.89953 * 9 7 2 30 30 H 1.08997 * 111.81004 * 59.08047 * 29 9 7 31 31 H 0.96998 * 119.99787 * 185.85931 * 1 2 3 32 32 H 1.08999 * 110.37190 * 274.14068 * 10 9 7 33 33 H 1.09003 * 110.36678 * 36.47037 * 10 9 7 34 34 H 1.08998 * 111.18543 * 279.25805 * 11 10 9 35 35 H 1.08999 * 110.88930 * 155.42759 * 11 10 9 36 36 H 0.97002 * 120.00154 * 244.05663 * 13 12 11 37 37 H 1.08006 * 119.81321 * 359.97438 * 17 16 14 38 38 H 1.08000 * 119.60571 * 179.97438 * 18 17 16 39 39 H 1.07998 * 119.90499 * 180.02562 * 19 18 17 40 40 H 1.08002 * 125.64485 * 180.02562 * 24 23 21 41 41 H 1.09004 * 110.52641 * 354.00183 * 26 12 11 42 42 H 1.08998 * 109.40560 * 232.72853 * 26 12 11 43 43 H 1.09001 * 110.49392 * 215.68524 * 27 26 12 44 44 H 1.08997 * 110.60719 * 93.08041 * 27 26 12 45 45 H 1.09003 * 110.66988 * 279.37662 * 28 27 26 46 46 H 1.09004 * 110.67081 * 156.24433 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.1039 1.6965 -1.2125 5 1 1.2851 2.7465 0.0006 6 1 3.1039 1.6965 1.2125 7 6 2.0102 -1.2021 0.0005 8 1 3.0018 -1.2529 0.4255 9 7 1.4377 -2.3235 -0.5377 10 6 0.2361 -2.3477 -1.3905 11 6 0.3714 -3.6490 -2.2241 12 6 0.9881 -4.6217 -1.1879 13 7 -0.0232 -5.2884 -0.3640 14 6 -0.9123 -6.1256 -0.9344 15 8 -0.8752 -6.3271 -2.1330 16 6 -1.9299 -6.7971 -0.1049 17 6 -1.9776 -6.5716 1.2660 18 6 -2.9330 -7.2011 2.0463 19 6 -3.8517 -8.0594 1.4815 20 6 -3.8296 -8.3056 0.1114 21 7 -4.5893 -9.0867 -0.7228 22 1 -5.3361 -9.6456 -0.4570 23 7 -4.0966 -8.9365 -2.0250 24 6 -3.0881 -8.1120 -2.0206 25 6 -2.8689 -7.6716 -0.6974 26 6 1.9247 -5.6144 -1.9277 27 6 3.3596 -5.3162 -1.4475 28 6 3.3122 -3.8320 -1.0118 29 6 1.9173 -3.7007 -0.3541 30 1 1.9358 -3.9863 0.6976 31 1 -0.4850 -0.8357 0.0858 32 1 -0.6642 -2.3789 -0.7769 33 1 0.2190 -1.4775 -2.0467 34 1 1.0416 -3.5059 -3.0717 35 1 -0.6052 -4.0010 -2.5565 36 1 -0.0530 -5.1274 0.5921 37 1 -1.2655 -5.9017 1.7250 38 1 -2.9585 -7.0173 3.1103 39 1 -4.5908 -8.5423 2.1035 40 1 -2.5164 -7.8122 -2.8866 41 1 1.8553 -5.4736 -3.0064 42 1 1.6485 -6.6359 -1.6664 43 1 4.0707 -5.4521 -2.2624 44 1 3.6219 -5.9536 -0.6032 45 1 3.3930 -3.1741 -1.8771 46 1 4.0998 -3.6177 -0.2894 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000992089138.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:03:21 Heat of formation + Delta-G solvation = 61.910106 kcal Electronic energy + Delta-G solvation = -30042.849172 eV Core-core repulsion = 26126.340113 eV Total energy + Delta-G solvation = -3916.509059 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -42.60806 -41.55194 -39.65971 -37.90993 -36.29116 -34.86978 -33.66580 -33.32102 -31.67019 -30.97179 -30.44218 -28.19501 -27.68540 -25.71632 -25.16120 -23.54097 -22.93263 -22.49320 -21.69509 -21.27057 -20.31379 -19.48767 -19.18100 -17.91092 -17.54249 -17.27782 -16.72330 -16.20765 -15.93591 -15.76142 -15.67226 -15.57268 -15.49408 -15.18143 -15.03939 -14.61797 -14.46180 -14.18492 -13.54545 -13.26292 -13.14242 -12.95328 -12.82495 -12.77632 -12.58086 -12.37440 -12.20668 -12.05061 -11.96461 -11.88607 -11.85646 -11.63180 -11.48957 -11.38895 -11.31244 -10.82780 -10.47192 -10.06134 -9.75374 -9.12088 -8.97601 -8.25289 -5.25245 -0.58216 0.33361 1.38555 1.59535 1.67806 1.71231 1.84682 1.85548 2.04065 2.67024 2.81376 3.21247 3.28083 3.50019 3.53704 3.62790 3.80593 3.82409 3.87073 3.96426 3.98030 4.25023 4.27539 4.29496 4.37452 4.46497 4.55140 4.57028 4.69776 4.76107 4.81043 4.83275 4.86342 4.97999 5.06115 5.10898 5.17451 5.18831 5.26801 5.28830 5.31821 5.35859 5.53068 5.61973 5.69245 5.75161 6.27727 6.36104 6.49611 6.52854 6.94109 7.17521 7.76067 8.34429 9.07710 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.015683 B = 0.003173 C = 0.002922 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1784.934182 B = 8821.916867 C = 9580.417093 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.953 5.953 2 C -0.081 4.081 3 Si 1.112 2.888 4 H -0.284 1.284 5 H -0.297 1.297 6 H -0.273 1.273 7 C -0.331 4.331 8 H 0.067 0.933 9 N -0.612 5.612 10 C 0.156 3.844 11 C -0.121 4.121 12 C 0.171 3.829 13 N -0.695 5.695 14 C 0.556 3.444 15 O -0.556 6.556 16 C -0.080 4.080 17 C -0.112 4.112 18 C -0.072 4.072 19 C -0.104 4.104 20 C 0.110 3.890 21 N -0.497 5.497 22 H 0.456 0.544 23 N -0.270 5.270 24 C 0.074 3.926 25 C -0.156 4.156 26 C -0.102 4.102 27 C -0.110 4.110 28 C -0.121 4.121 29 C 0.154 3.846 30 H 0.050 0.950 31 H 0.255 0.745 32 H 0.002 0.998 33 H 0.016 0.984 34 H 0.076 0.924 35 H 0.068 0.932 36 H 0.408 0.592 37 H 0.145 0.855 38 H 0.176 0.824 39 H 0.169 0.831 40 H 0.195 0.805 41 H 0.069 0.931 42 H 0.066 0.934 43 H 0.081 0.919 44 H 0.079 0.921 45 H 0.053 0.947 46 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.079 -19.797 4.759 20.766 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.597 5.597 2 C -0.277 4.277 3 Si 0.937 3.063 4 H -0.211 1.211 5 H -0.223 1.223 6 H -0.198 1.198 7 C -0.459 4.459 8 H 0.085 0.915 9 N -0.337 5.337 10 C 0.030 3.970 11 C -0.160 4.160 12 C 0.084 3.916 13 N -0.346 5.346 14 C 0.345 3.655 15 O -0.436 6.436 16 C -0.086 4.086 17 C -0.132 4.132 18 C -0.093 4.093 19 C -0.126 4.126 20 C -0.007 4.007 21 N -0.214 5.214 22 H 0.304 0.696 23 N -0.085 5.085 24 C -0.120 4.120 25 C -0.165 4.165 26 C -0.141 4.141 27 C -0.148 4.148 28 C -0.161 4.161 29 C 0.048 3.952 30 H 0.067 0.933 31 H 0.066 0.934 32 H 0.019 0.981 33 H 0.034 0.966 34 H 0.095 0.905 35 H 0.086 0.914 36 H 0.245 0.755 37 H 0.163 0.837 38 H 0.193 0.807 39 H 0.186 0.814 40 H 0.212 0.788 41 H 0.087 0.913 42 H 0.084 0.916 43 H 0.100 0.900 44 H 0.098 0.902 45 H 0.072 0.928 46 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -4.926 -18.978 3.133 19.856 hybrid contribution -0.038 -0.826 0.871 1.201 sum -4.965 -19.804 4.004 20.806 Atomic orbital electron populations 1.70892 1.07681 1.29536 1.51551 1.26959 0.96538 1.04233 0.99945 0.82886 0.73820 0.72368 0.77223 1.21074 1.22309 1.19850 1.19976 0.98959 0.88693 1.38305 0.91502 1.44765 1.30946 1.01865 1.56124 1.21382 0.89072 0.95182 0.91328 1.23048 1.01168 0.94534 0.97234 1.21708 0.87581 0.91458 0.90883 1.45714 1.32015 1.45046 1.11834 1.18416 0.80894 0.78717 0.87484 1.90699 1.73103 1.64077 1.15677 1.19421 0.96012 0.98771 0.94362 1.21523 1.00184 1.00077 0.91418 1.21369 0.92297 0.93772 1.01827 1.20716 1.01657 1.00569 0.89683 1.19117 0.93203 0.94629 0.93799 1.46082 1.31020 1.41571 1.02769 0.69600 1.76721 1.12570 1.19011 1.00236 1.24172 0.95021 0.94724 0.98086 1.18868 1.00118 1.03574 0.93946 1.22461 0.94083 0.97905 0.99630 1.22299 0.95727 0.95139 1.01599 1.22737 0.96717 0.96687 1.00001 1.22032 0.93172 0.83755 0.96265 0.93275 0.93375 0.98078 0.96595 0.90500 0.91363 0.75503 0.83749 0.80700 0.81350 0.78822 0.91262 0.91557 0.90025 0.90222 0.92834 0.91833 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -58.51 12.81 21.65 0.28 -58.23 16 2 C -0.08 -4.62 5.09 84.86 0.43 -4.19 16 3 Si 1.11 51.06 30.00 68.60 2.06 53.12 16 4 H -0.28 -12.45 7.11 99.48 0.71 -11.74 16 5 H -0.30 -14.05 7.11 99.48 0.71 -13.34 16 6 H -0.27 -11.48 7.11 99.48 0.71 -10.77 16 7 C -0.33 -18.08 9.76 84.03 0.82 -17.26 16 8 H 0.07 3.58 7.96 -2.91 -0.02 3.56 16 9 N -0.61 -29.88 2.97 -663.19 -1.97 -31.84 16 10 C 0.16 7.59 5.21 86.94 0.45 8.04 16 11 C -0.12 -4.76 5.83 31.98 0.19 -4.58 16 12 C 0.17 5.78 0.77 5.76 0.00 5.78 16 13 N -0.70 -20.86 5.22 -416.42 -2.18 -23.04 16 14 C 0.56 17.08 6.98 86.67 0.60 17.69 16 15 O -0.56 -19.61 12.88 -4.03 -0.05 -19.67 16 16 C -0.08 -2.06 5.90 -19.90 -0.12 -2.18 16 17 C -0.11 -2.14 9.52 22.52 0.21 -1.92 16 18 C -0.07 -0.96 9.99 22.23 0.22 -0.74 16 19 C -0.10 -1.40 10.06 22.41 0.23 -1.18 16 20 C 0.11 2.24 7.32 39.13 0.29 2.52 16 21 N -0.50 -9.50 7.45 -51.55 -0.38 -9.89 16 22 H 0.46 5.17 8.96 -213.37 -1.91 3.26 16 23 N -0.27 -6.91 12.58 -56.44 -0.71 -7.62 16 24 C 0.07 2.06 11.23 85.65 0.96 3.03 16 25 C -0.16 -4.12 6.00 -21.20 -0.13 -4.25 16 26 C -0.10 -2.98 5.34 31.78 0.17 -2.81 16 27 C -0.11 -2.84 6.84 31.61 0.22 -2.62 16 28 C -0.12 -4.09 6.22 31.80 0.20 -3.89 16 29 C 0.15 5.89 3.61 46.24 0.17 6.06 16 30 H 0.05 1.86 7.97 -2.39 -0.02 1.84 16 31 H 0.26 15.88 5.83 -92.71 -0.54 15.34 16 32 H 0.00 0.08 6.86 -2.39 -0.02 0.06 16 33 H 0.02 0.87 7.70 -2.39 -0.02 0.85 16 34 H 0.08 2.97 7.60 -2.39 -0.02 2.95 16 35 H 0.07 2.74 6.84 -2.39 -0.02 2.72 16 36 H 0.41 10.80 6.51 -92.71 -0.60 10.19 16 37 H 0.14 2.35 6.38 -2.91 -0.02 2.33 16 38 H 0.18 1.06 8.06 -2.91 -0.02 1.04 16 39 H 0.17 0.97 8.06 -2.91 -0.02 0.94 16 40 H 0.20 5.49 6.95 -2.91 -0.02 5.47 16 41 H 0.07 2.08 7.40 -2.39 -0.02 2.06 16 42 H 0.07 1.89 7.48 -2.39 -0.02 1.87 16 43 H 0.08 1.84 8.14 -2.39 -0.02 1.82 16 44 H 0.08 1.79 8.14 -2.39 -0.02 1.77 16 45 H 0.05 2.02 8.09 -2.39 -0.02 2.00 16 46 H 0.06 2.07 8.14 -2.38 -0.02 2.05 16 Total: -1.00 -74.12 363.96 0.72 -73.40 By element: Atomic # 1 Polarization: 27.52 SS G_CDS: -1.25 Total: 26.28 kcal Atomic # 6 Polarization: -7.42 SS G_CDS: 4.92 Total: -2.50 kcal Atomic # 7 Polarization: -125.67 SS G_CDS: -4.96 Total: -130.63 kcal Atomic # 8 Polarization: -19.61 SS G_CDS: -0.05 Total: -19.67 kcal Atomic # 14 Polarization: 51.06 SS G_CDS: 2.06 Total: 53.12 kcal Total: -74.12 0.72 -73.40 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000992089138.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 135.311 kcal (2) G-P(sol) polarization free energy of solvation -74.119 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.192 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.718 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.401 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.910 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds