Wall clock time and date at job start Sat Apr 11 2020 06:03:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86800 * 119.99940 * 2 1 4 4 H 1.48502 * 109.47280 * 239.99729 * 3 2 1 5 5 H 1.48503 * 109.47121 * 0.02562 * 3 2 1 6 6 H 1.48505 * 109.47336 * 119.99460 * 3 2 1 7 7 C 1.38808 * 120.00206 * 179.97438 * 2 1 3 8 8 H 1.08007 * 120.00028 * 179.97438 * 7 2 1 9 9 N 1.36938 * 120.00121 * 0.02562 * 7 2 1 10 10 C 1.49296 * 127.10009 * 359.97438 * 9 7 2 11 11 C 1.56228 * 106.50899 * 171.37801 * 10 9 7 12 12 C 1.52146 * 100.80963 * 336.54612 * 11 10 9 13 13 N 1.46496 * 111.09114 * 286.03088 * 12 11 10 14 14 C 1.34784 * 119.99999 * 298.98171 * 13 12 11 15 15 O 1.21634 * 119.99834 * 0.02562 * 14 13 12 16 16 C 1.47230 * 119.99803 * 180.02562 * 14 13 12 17 17 C 1.38946 * 120.86087 * 359.97438 * 16 14 13 18 18 C 1.39740 * 119.29147 * 180.30387 * 17 16 14 19 19 C 1.35118 * 121.14256 * 359.39094 * 18 17 16 20 20 N 1.36154 * 121.71834 * 0.65677 * 19 18 17 21 21 C 1.37003 * 132.64199 * 179.68332 * 20 19 18 22 22 C 1.34953 * 107.15033 * 179.97438 * 21 20 19 23 23 N 1.33745 * 108.60742 * 0.02562 * 22 21 20 24 24 C 1.31981 * 109.16627 * 359.97438 * 23 22 21 25 25 C 1.51225 * 122.09921 * 151.85203 * 12 11 10 26 26 C 1.56577 * 104.17429 * 218.94802 * 25 12 11 27 27 C 1.56286 * 106.07297 * 6.57480 * 26 25 12 28 28 C 1.42701 * 127.10390 * 180.02562 * 9 7 2 29 29 H 1.08992 * 108.16223 * 103.45130 * 28 9 7 30 30 H 0.96996 * 120.00312 * 0.02562 * 1 2 3 31 31 H 1.08993 * 110.05148 * 52.10959 * 10 9 7 32 32 H 1.09003 * 110.04386 * 290.63181 * 10 9 7 33 33 H 1.09005 * 111.15114 * 218.66369 * 11 10 9 34 34 H 1.08991 * 111.15721 * 94.43506 * 11 10 9 35 35 H 0.97003 * 120.00208 * 118.98687 * 13 12 11 36 36 H 1.08002 * 120.35131 * 0.02562 * 17 16 14 37 37 H 1.07994 * 119.42501 * 179.72339 * 18 17 16 38 38 H 1.07998 * 119.13753 * 180.27638 * 19 18 17 39 39 H 1.07999 * 126.42164 * 359.97438 * 21 20 19 40 40 H 1.08005 * 125.69699 * 180.02562 * 22 21 20 41 41 H 1.09003 * 110.40983 * 336.85953 * 25 12 11 42 42 H 1.08999 * 110.40954 * 99.29612 * 25 12 11 43 43 H 1.09004 * 109.73803 * 247.60439 * 26 25 12 44 44 H 1.09000 * 110.51610 * 125.96010 * 26 25 12 45 45 H 1.09000 * 110.96721 * 266.56545 * 27 26 25 46 46 H 1.08995 * 110.97450 * 142.79989 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1040 1.6964 -1.2125 5 1 1.2851 2.7465 0.0006 6 1 3.1039 1.6965 1.2126 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0001 9 7 1.3256 -2.3880 0.0005 10 6 -0.1559 -2.5727 0.0005 11 6 -0.4133 -4.0972 -0.2240 12 6 0.8807 -4.5068 -0.9115 13 7 0.9157 -4.0301 -2.2963 14 6 -0.0180 -4.4446 -3.1755 15 8 -0.8899 -5.2142 -2.8191 16 6 0.0176 -3.9660 -4.5674 17 6 1.0051 -3.0864 -4.9936 18 6 1.0040 -2.6480 -6.3205 19 6 0.0676 -3.0742 -7.1964 20 7 -0.9202 -3.9349 -6.8259 21 6 -1.9659 -4.4972 -7.5095 22 6 -2.6346 -5.2819 -6.6386 23 7 -2.0278 -5.2125 -5.4488 24 6 -0.9885 -4.4039 -5.5389 25 6 1.4387 -5.9082 -0.8046 26 6 2.9855 -5.6969 -0.6837 27 6 3.2029 -4.1543 -0.5588 28 6 1.8809 -3.7026 0.0016 29 1 1.7904 -4.1088 1.0089 30 1 -0.4850 0.8400 -0.0004 31 1 -0.6044 -1.9949 -0.8075 32 1 -0.5712 -2.2608 0.9589 33 1 -1.2727 -4.2593 -0.8747 34 1 -0.5368 -4.6192 0.7247 35 1 1.6109 -3.4162 -2.5805 36 1 1.7629 -2.7417 -4.3055 37 1 1.7679 -1.9608 -6.6529 38 1 0.0999 -2.7180 -8.2154 39 1 -2.2093 -4.3417 -8.5501 40 1 -3.5132 -5.8679 -6.8647 41 1 1.0608 -6.4005 0.0915 42 1 1.1855 -6.4870 -1.6928 43 1 3.4797 -6.0746 -1.5788 44 1 3.3723 -6.2035 0.2005 45 1 3.3866 -3.7060 -1.5352 46 1 4.0161 -3.9295 0.1312 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000992333340.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:03:26 Heat of formation + Delta-G solvation = 111.043432 kcal Electronic energy + Delta-G solvation = -30627.816645 eV Core-core repulsion = 26713.438167 eV Total energy + Delta-G solvation = -3914.378478 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -42.70047 -40.40796 -38.11522 -37.10118 -34.40287 -33.61723 -32.79833 -31.66066 -30.36574 -29.79423 -28.66686 -26.92713 -25.83483 -24.63974 -23.98404 -22.63391 -22.07786 -20.89659 -20.41826 -19.61422 -18.74303 -17.95929 -17.25363 -16.47804 -16.46116 -15.90764 -15.69593 -15.48552 -14.65550 -14.59640 -14.37289 -14.09638 -13.99468 -13.90844 -13.56049 -13.34500 -12.65740 -12.47030 -12.32926 -12.21296 -11.92654 -11.88867 -11.37542 -11.34707 -11.01117 -10.91744 -10.83635 -10.77132 -10.45834 -10.29876 -10.01682 -9.96769 -9.92079 -9.68474 -9.54088 -9.03564 -8.87148 -8.66761 -8.40571 -7.93205 -6.86205 -5.74741 -3.09833 0.31283 1.22981 2.44255 2.78393 3.09156 3.35105 3.40772 3.42559 3.56197 3.89700 4.09312 4.29696 4.43919 4.55670 4.64452 4.75341 4.85310 5.18159 5.23432 5.27214 5.36627 5.45172 5.47302 5.62108 5.67240 5.72451 5.83456 5.85986 5.88763 5.97475 6.01864 6.17006 6.28414 6.29818 6.33578 6.40118 6.45613 6.51895 6.58320 6.73552 6.87501 6.94479 6.95345 7.25426 7.54508 7.62608 7.79830 7.95043 8.08454 8.20150 8.76426 9.12530 9.79270 10.49456 11.37060 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.010967 B = 0.004284 C = 0.003609 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2552.534790 B = 6533.631724 C = 7757.275568 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C -0.003 4.003 3 Si 0.908 3.092 4 H -0.286 1.286 5 H -0.291 1.291 6 H -0.285 1.285 7 C -0.233 4.233 8 H 0.078 0.922 9 N -0.583 5.583 10 C 0.179 3.821 11 C -0.143 4.143 12 C 0.135 3.865 13 N -0.685 5.685 14 C 0.559 3.441 15 O -0.510 6.510 16 C -0.081 4.081 17 C -0.059 4.059 18 C -0.149 4.149 19 C 0.073 3.927 20 N -0.372 5.372 21 C -0.104 4.104 22 C 0.025 3.975 23 N -0.459 5.459 24 C 0.256 3.744 25 C -0.113 4.113 26 C -0.117 4.117 27 C -0.115 4.115 28 C 0.159 3.841 29 H 0.023 0.977 30 H 0.253 0.747 31 H 0.064 0.936 32 H 0.034 0.966 33 H 0.078 0.922 34 H 0.064 0.936 35 H 0.398 0.602 36 H 0.150 0.850 37 H 0.156 0.844 38 H 0.163 0.837 39 H 0.182 0.818 40 H 0.180 0.820 41 H 0.070 0.930 42 H 0.067 0.933 43 H 0.058 0.942 44 H 0.063 0.937 45 H 0.063 0.937 46 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.311 -8.087 -14.548 16.971 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.563 5.563 2 C -0.200 4.200 3 Si 0.738 3.262 4 H -0.212 1.212 5 H -0.217 1.217 6 H -0.212 1.212 7 C -0.361 4.361 8 H 0.096 0.904 9 N -0.307 5.307 10 C 0.056 3.944 11 C -0.182 4.182 12 C 0.047 3.953 13 N -0.336 5.336 14 C 0.344 3.656 15 O -0.386 6.386 16 C -0.087 4.087 17 C -0.083 4.083 18 C -0.170 4.170 19 C -0.049 4.049 20 N -0.045 5.045 21 C -0.234 4.234 22 C -0.125 4.125 23 N -0.177 5.177 24 C 0.009 3.991 25 C -0.152 4.152 26 C -0.155 4.155 27 C -0.154 4.154 28 C 0.048 3.952 29 H 0.040 0.960 30 H 0.064 0.936 31 H 0.082 0.918 32 H 0.052 0.948 33 H 0.097 0.903 34 H 0.083 0.917 35 H 0.234 0.766 36 H 0.168 0.832 37 H 0.174 0.826 38 H 0.180 0.820 39 H 0.199 0.801 40 H 0.197 0.803 41 H 0.089 0.911 42 H 0.086 0.914 43 H 0.077 0.923 44 H 0.081 0.919 45 H 0.082 0.918 46 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 2.311 -8.799 -13.608 16.368 hybrid contribution 0.959 1.873 -1.038 2.347 sum 3.270 -6.926 -14.646 16.527 Atomic orbital electron populations 1.69919 1.04894 1.25242 1.56237 1.24788 0.95562 0.97560 1.02074 0.86276 0.78485 0.83532 0.77864 1.21223 1.21692 1.21198 1.18950 0.90189 0.82304 1.44634 0.90396 1.43651 1.01768 0.99134 1.86105 1.21999 0.83011 0.88793 1.00633 1.22841 0.96940 0.99202 0.99231 1.21544 0.99024 0.93596 0.81099 1.45527 1.30240 1.48139 1.09739 1.17458 0.82486 0.81876 0.83788 1.90827 1.35009 1.34287 1.78475 1.20404 0.94288 1.00436 0.93543 1.21750 0.96886 0.93562 0.96111 1.20653 1.00201 1.02926 0.93182 1.21603 0.89051 0.93196 1.01090 1.42926 1.19749 1.30485 1.11381 1.22624 0.93672 1.06770 1.00327 1.22684 1.00891 1.00185 0.88752 1.70845 1.05841 1.17889 1.23114 1.21589 0.97105 0.97463 0.82990 1.22055 0.94863 0.96179 1.02058 1.22968 0.95730 0.95805 1.00983 1.21853 0.97991 0.94560 1.00958 1.20822 0.91516 0.87486 0.95359 0.95991 0.93626 0.91810 0.94778 0.90310 0.91733 0.76617 0.83196 0.82629 0.81976 0.80059 0.80266 0.91096 0.91425 0.92305 0.91865 0.91837 0.91690 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.24 10.55 55.49 0.59 -25.65 16 2 C 0.00 -0.08 5.49 -17.43 -0.10 -0.17 16 3 Si 0.91 21.17 29.55 -169.99 -5.02 16.15 16 4 H -0.29 -6.46 7.11 56.52 0.40 -6.06 16 5 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 6 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 7 C -0.23 -6.04 10.29 -15.06 -0.15 -6.19 16 8 H 0.08 1.94 7.83 -52.48 -0.41 1.52 16 9 N -0.58 -13.96 3.16 -162.67 -0.51 -14.48 16 10 C 0.18 4.38 5.33 -0.76 0.00 4.37 16 11 C -0.14 -2.98 6.10 -25.43 -0.16 -3.13 16 12 C 0.14 2.50 0.42 -130.69 -0.06 2.44 16 13 N -0.68 -12.23 4.43 -47.68 -0.21 -12.45 16 14 C 0.56 10.63 7.16 -12.60 -0.09 10.54 16 15 O -0.51 -11.30 14.31 5.25 0.08 -11.22 16 16 C -0.08 -1.34 6.06 -102.63 -0.62 -1.96 16 17 C -0.06 -0.75 9.63 -38.76 -0.37 -1.12 16 18 C -0.15 -1.42 9.91 -40.13 -0.40 -1.82 16 19 C 0.07 0.70 10.88 -16.74 -0.18 0.52 16 20 N -0.37 -4.82 2.94 -61.10 -0.18 -5.00 16 21 C -0.10 -1.16 11.76 -16.41 -0.19 -1.35 16 22 C 0.03 0.34 11.83 -17.88 -0.21 0.13 16 23 N -0.46 -8.35 10.70 -11.32 -0.12 -8.47 16 24 C 0.26 4.33 7.67 -154.14 -1.18 3.15 16 25 C -0.11 -1.79 6.24 -25.70 -0.16 -1.95 16 26 C -0.12 -1.60 6.95 -23.04 -0.16 -1.76 16 27 C -0.11 -1.83 6.46 -26.21 -0.17 -2.00 16 28 C 0.16 3.12 2.65 -68.71 -0.18 2.94 16 29 H 0.02 0.47 7.98 -51.93 -0.41 0.05 16 30 H 0.25 7.15 8.31 -40.82 -0.34 6.81 16 31 H 0.06 1.75 7.05 -51.93 -0.37 1.38 16 32 H 0.03 0.91 7.98 -51.93 -0.41 0.49 16 33 H 0.08 1.75 6.27 -51.93 -0.33 1.42 16 34 H 0.06 1.25 8.14 -51.93 -0.42 0.82 16 35 H 0.40 6.68 5.65 -40.82 -0.23 6.45 16 36 H 0.15 1.71 6.48 -52.49 -0.34 1.37 16 37 H 0.16 0.94 8.06 -52.49 -0.42 0.51 16 38 H 0.16 0.86 8.06 -52.49 -0.42 0.44 16 39 H 0.18 1.21 8.06 -52.49 -0.42 0.78 16 40 H 0.18 1.75 8.06 -52.48 -0.42 1.33 16 41 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 42 H 0.07 1.12 7.73 -51.93 -0.40 0.72 16 43 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 44 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 45 H 0.06 0.98 7.17 -51.93 -0.37 0.61 16 46 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 LS Contribution 367.20 15.07 5.53 5.53 Total: -1.00 -34.71 367.20 -10.46 -45.17 By element: Atomic # 1 Polarization: 13.99 SS G_CDS: -6.22 Total: 7.78 kcal Atomic # 6 Polarization: 7.02 SS G_CDS: -4.39 Total: 2.63 kcal Atomic # 7 Polarization: -65.60 SS G_CDS: -0.44 Total: -66.04 kcal Atomic # 8 Polarization: -11.30 SS G_CDS: 0.08 Total: -11.22 kcal Atomic # 14 Polarization: 21.17 SS G_CDS: -5.02 Total: 16.15 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -34.71 -10.46 -45.17 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000992333340.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 156.216 kcal (2) G-P(sol) polarization free energy of solvation -34.711 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 121.505 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.461 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.172 kcal (6) G-S(sol) free energy of system = (1) + (5) 111.043 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds