Wall clock time and date at job start Sat Apr 11 2020 06:03:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86800 * 119.99940 * 2 1 4 4 H 1.48502 * 109.47280 * 239.99729 * 3 2 1 5 5 H 1.48503 * 109.47121 * 0.02562 * 3 2 1 6 6 H 1.48505 * 109.47336 * 119.99460 * 3 2 1 7 7 C 1.38808 * 120.00206 * 179.97438 * 2 1 3 8 8 H 1.08007 * 120.00028 * 179.97438 * 7 2 1 9 9 N 1.36938 * 120.00121 * 0.02562 * 7 2 1 10 10 C 1.49296 * 127.10009 * 359.97438 * 9 7 2 11 11 C 1.56228 * 106.50899 * 171.37801 * 10 9 7 12 12 C 1.52146 * 100.80963 * 336.54612 * 11 10 9 13 13 N 1.46496 * 111.09114 * 286.03088 * 12 11 10 14 14 C 1.34784 * 119.99999 * 298.98171 * 13 12 11 15 15 O 1.21634 * 119.99834 * 0.02562 * 14 13 12 16 16 C 1.47230 * 119.99803 * 180.02562 * 14 13 12 17 17 C 1.38946 * 120.86087 * 359.97438 * 16 14 13 18 18 C 1.39740 * 119.29147 * 180.30387 * 17 16 14 19 19 C 1.35118 * 121.14256 * 359.39094 * 18 17 16 20 20 N 1.36154 * 121.71834 * 0.65677 * 19 18 17 21 21 C 1.37003 * 132.64199 * 179.68332 * 20 19 18 22 22 C 1.34953 * 107.15033 * 179.97438 * 21 20 19 23 23 N 1.33745 * 108.60742 * 0.02562 * 22 21 20 24 24 C 1.31981 * 109.16627 * 359.97438 * 23 22 21 25 25 C 1.51225 * 122.09921 * 151.85203 * 12 11 10 26 26 C 1.56577 * 104.17429 * 218.94802 * 25 12 11 27 27 C 1.56286 * 106.07297 * 6.57480 * 26 25 12 28 28 C 1.42701 * 127.10390 * 180.02562 * 9 7 2 29 29 H 1.08992 * 108.16223 * 103.45130 * 28 9 7 30 30 H 0.96996 * 120.00312 * 0.02562 * 1 2 3 31 31 H 1.08993 * 110.05148 * 52.10959 * 10 9 7 32 32 H 1.09003 * 110.04386 * 290.63181 * 10 9 7 33 33 H 1.09005 * 111.15114 * 218.66369 * 11 10 9 34 34 H 1.08991 * 111.15721 * 94.43506 * 11 10 9 35 35 H 0.97003 * 120.00208 * 118.98687 * 13 12 11 36 36 H 1.08002 * 120.35131 * 0.02562 * 17 16 14 37 37 H 1.07994 * 119.42501 * 179.72339 * 18 17 16 38 38 H 1.07998 * 119.13753 * 180.27638 * 19 18 17 39 39 H 1.07999 * 126.42164 * 359.97438 * 21 20 19 40 40 H 1.08005 * 125.69699 * 180.02562 * 22 21 20 41 41 H 1.09003 * 110.40983 * 336.85953 * 25 12 11 42 42 H 1.08999 * 110.40954 * 99.29612 * 25 12 11 43 43 H 1.09004 * 109.73803 * 247.60439 * 26 25 12 44 44 H 1.09000 * 110.51610 * 125.96010 * 26 25 12 45 45 H 1.09000 * 110.96721 * 266.56545 * 27 26 25 46 46 H 1.08995 * 110.97450 * 142.79989 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1040 1.6964 -1.2125 5 1 1.2851 2.7465 0.0006 6 1 3.1039 1.6965 1.2126 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0001 9 7 1.3256 -2.3880 0.0005 10 6 -0.1559 -2.5727 0.0005 11 6 -0.4133 -4.0972 -0.2240 12 6 0.8807 -4.5068 -0.9115 13 7 0.9157 -4.0301 -2.2963 14 6 -0.0180 -4.4446 -3.1755 15 8 -0.8899 -5.2142 -2.8191 16 6 0.0176 -3.9660 -4.5674 17 6 1.0051 -3.0864 -4.9936 18 6 1.0040 -2.6480 -6.3205 19 6 0.0676 -3.0742 -7.1964 20 7 -0.9202 -3.9349 -6.8259 21 6 -1.9659 -4.4972 -7.5095 22 6 -2.6346 -5.2819 -6.6386 23 7 -2.0278 -5.2125 -5.4488 24 6 -0.9885 -4.4039 -5.5389 25 6 1.4387 -5.9082 -0.8046 26 6 2.9855 -5.6969 -0.6837 27 6 3.2029 -4.1543 -0.5588 28 6 1.8809 -3.7026 0.0016 29 1 1.7904 -4.1088 1.0089 30 1 -0.4850 0.8400 -0.0004 31 1 -0.6044 -1.9949 -0.8075 32 1 -0.5712 -2.2608 0.9589 33 1 -1.2727 -4.2593 -0.8747 34 1 -0.5368 -4.6192 0.7247 35 1 1.6109 -3.4162 -2.5805 36 1 1.7629 -2.7417 -4.3055 37 1 1.7679 -1.9608 -6.6529 38 1 0.0999 -2.7180 -8.2154 39 1 -2.2093 -4.3417 -8.5501 40 1 -3.5132 -5.8679 -6.8647 41 1 1.0608 -6.4005 0.0915 42 1 1.1855 -6.4870 -1.6928 43 1 3.4797 -6.0746 -1.5788 44 1 3.3723 -6.2035 0.2005 45 1 3.3866 -3.7060 -1.5352 46 1 4.0161 -3.9295 0.1312 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000992333340.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:03:26 Heat of formation + Delta-G solvation = 89.151879 kcal Electronic energy + Delta-G solvation = -30628.765934 eV Core-core repulsion = 26713.438167 eV Total energy + Delta-G solvation = -3915.327767 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -43.66005 -41.92379 -39.52681 -38.10523 -36.14416 -34.79169 -34.16133 -33.47280 -31.70693 -31.06640 -29.70606 -28.53275 -27.33944 -25.98626 -25.59924 -23.61942 -23.16010 -22.31640 -21.81966 -21.21314 -20.21369 -19.09378 -18.37658 -18.23883 -17.58437 -17.22249 -16.91430 -16.44597 -16.31267 -16.09474 -15.75314 -15.67860 -15.33629 -14.98067 -14.90062 -14.47122 -14.12310 -14.04956 -13.61258 -13.47930 -13.11256 -13.03127 -12.94483 -12.84921 -12.82810 -12.58110 -12.16236 -12.13516 -12.04445 -11.88927 -11.74942 -11.53304 -11.33965 -11.16720 -10.96790 -10.69442 -10.55863 -9.92636 -9.78123 -8.89856 -8.85943 -7.80323 -5.17308 -0.65621 0.30989 1.49436 1.52743 1.54138 1.58845 1.79727 1.98548 2.28122 2.53162 2.69286 3.10388 3.14548 3.38944 3.47362 3.73779 3.77713 3.86499 3.89456 3.91163 4.11822 4.27471 4.36255 4.42982 4.44005 4.50528 4.56317 4.59022 4.64778 4.74821 4.81857 4.94121 4.96181 4.99793 5.02921 5.09227 5.13639 5.24526 5.30197 5.42120 5.50921 5.56654 5.61729 5.64786 5.68160 5.81645 6.09172 6.19376 6.67322 6.98262 7.05422 7.36444 7.79146 8.52988 9.31568 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.010967 B = 0.004284 C = 0.003609 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2552.534790 B = 6533.631724 C = 7757.275568 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.954 5.954 2 C -0.063 4.063 3 Si 0.975 3.025 4 H -0.267 1.267 5 H -0.305 1.305 6 H -0.281 1.281 7 C -0.232 4.232 8 H 0.094 0.906 9 N -0.594 5.594 10 C 0.195 3.805 11 C -0.135 4.135 12 C 0.140 3.860 13 N -0.681 5.681 14 C 0.556 3.444 15 O -0.557 6.557 16 C -0.140 4.140 17 C -0.034 4.034 18 C -0.158 4.158 19 C 0.091 3.909 20 N -0.377 5.377 21 C -0.079 4.079 22 C -0.006 4.006 23 N -0.524 5.524 24 C 0.223 3.777 25 C -0.110 4.110 26 C -0.101 4.101 27 C -0.109 4.109 28 C 0.149 3.851 29 H 0.017 0.983 30 H 0.243 0.757 31 H 0.025 0.975 32 H -0.002 1.002 33 H 0.058 0.942 34 H 0.077 0.923 35 H 0.402 0.598 36 H 0.158 0.842 37 H 0.201 0.799 38 H 0.218 0.782 39 H 0.234 0.766 40 H 0.202 0.798 41 H 0.078 0.922 42 H 0.059 0.941 43 H 0.080 0.920 44 H 0.085 0.915 45 H 0.069 0.931 46 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.511 -7.731 -17.692 20.375 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.603 5.603 2 C -0.256 4.256 3 Si 0.804 3.196 4 H -0.193 1.193 5 H -0.232 1.232 6 H -0.207 1.207 7 C -0.360 4.360 8 H 0.112 0.888 9 N -0.317 5.317 10 C 0.070 3.930 11 C -0.174 4.174 12 C 0.053 3.947 13 N -0.332 5.332 14 C 0.344 3.656 15 O -0.436 6.436 16 C -0.146 4.146 17 C -0.058 4.058 18 C -0.178 4.178 19 C -0.030 4.030 20 N -0.050 5.050 21 C -0.208 4.208 22 C -0.154 4.154 23 N -0.243 5.243 24 C -0.024 4.024 25 C -0.148 4.148 26 C -0.139 4.139 27 C -0.147 4.147 28 C 0.040 3.960 29 H 0.034 0.966 30 H 0.053 0.947 31 H 0.043 0.957 32 H 0.016 0.984 33 H 0.076 0.924 34 H 0.095 0.905 35 H 0.239 0.761 36 H 0.176 0.824 37 H 0.218 0.782 38 H 0.235 0.765 39 H 0.251 0.749 40 H 0.218 0.782 41 H 0.096 0.904 42 H 0.077 0.923 43 H 0.099 0.901 44 H 0.104 0.896 45 H 0.088 0.912 46 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 5.566 -8.468 -16.769 19.593 hybrid contribution -0.074 1.783 -0.144 1.790 sum 5.492 -6.685 -16.912 18.997 Atomic orbital electron populations 1.70172 1.06662 1.25154 1.58343 1.25613 0.96222 1.00993 1.02773 0.85207 0.77015 0.78937 0.78485 1.19275 1.23151 1.20695 1.19412 0.90992 0.82940 1.42656 0.88838 1.43750 1.01502 1.00506 1.85961 1.21603 0.83750 0.90510 0.97126 1.22677 0.97924 0.96883 0.99878 1.21514 0.96692 0.95270 0.81262 1.45461 1.30316 1.48152 1.09301 1.17934 0.81578 0.81023 0.85084 1.90777 1.36684 1.36540 1.79609 1.20208 0.97413 1.04501 0.92449 1.22077 0.94936 0.90863 0.97936 1.21182 1.01549 1.03556 0.91499 1.22617 0.86747 0.90334 1.03345 1.43229 1.20798 1.30851 1.10163 1.23392 0.91647 1.04117 1.01618 1.23247 1.02181 1.01788 0.88198 1.70717 1.07639 1.19946 1.26031 1.21617 0.97398 0.98513 0.84851 1.22053 0.96739 0.94011 1.02039 1.22897 0.93610 0.94205 1.03168 1.21875 0.95757 0.95908 1.01175 1.21034 0.94320 0.85184 0.95450 0.96602 0.94734 0.95692 0.98359 0.92354 0.90467 0.76058 0.82422 0.78171 0.76504 0.74940 0.78161 0.90377 0.92265 0.90149 0.89609 0.91250 0.90506 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -57.29 10.55 21.65 0.23 -57.06 16 2 C -0.06 -3.45 5.49 84.86 0.47 -2.99 16 3 Si 0.97 43.77 29.55 68.60 2.03 45.79 16 4 H -0.27 -11.10 7.11 99.48 0.71 -10.40 16 5 H -0.30 -14.25 7.11 99.48 0.71 -13.54 16 6 H -0.28 -12.28 7.11 99.48 0.71 -11.57 16 7 C -0.23 -12.05 10.29 84.03 0.86 -11.19 16 8 H 0.09 4.50 7.83 -2.91 -0.02 4.48 16 9 N -0.59 -29.13 3.16 -668.58 -2.11 -31.25 16 10 C 0.19 10.18 5.33 86.96 0.46 10.64 16 11 C -0.13 -5.97 6.10 31.43 0.19 -5.78 16 12 C 0.14 5.31 0.42 4.34 0.00 5.31 16 13 N -0.68 -25.14 4.43 -423.01 -1.88 -27.01 16 14 C 0.56 22.51 7.16 86.61 0.62 23.13 16 15 O -0.56 -26.72 14.31 -4.14 -0.06 -26.78 16 16 C -0.14 -4.78 6.06 -18.57 -0.11 -4.90 16 17 C -0.03 -0.82 9.63 22.80 0.22 -0.60 16 18 C -0.16 -2.40 9.91 21.91 0.22 -2.19 16 19 C 0.09 1.33 10.88 83.30 0.91 2.24 16 20 N -0.38 -8.92 2.94 -347.21 -1.02 -9.95 16 21 C -0.08 -1.54 11.76 83.13 0.98 -0.56 16 22 C -0.01 -0.15 11.83 83.65 0.99 0.83 16 23 N -0.52 -20.10 10.70 -189.72 -2.03 -22.12 16 24 C 0.22 7.77 7.67 135.76 1.04 8.81 16 25 C -0.11 -3.41 6.24 31.26 0.20 -3.21 16 26 C -0.10 -2.47 6.95 32.99 0.23 -2.24 16 27 C -0.11 -3.21 6.46 30.93 0.20 -3.01 16 28 C 0.15 5.83 2.65 46.48 0.12 5.95 16 29 H 0.02 0.67 7.98 -2.39 -0.02 0.66 16 30 H 0.24 14.46 8.31 -92.71 -0.77 13.68 16 31 H 0.02 1.48 7.05 -2.39 -0.02 1.46 16 32 H 0.00 -0.11 7.98 -2.39 -0.02 -0.13 16 33 H 0.06 2.83 6.27 -2.38 -0.01 2.82 16 34 H 0.08 3.15 8.14 -2.39 -0.02 3.13 16 35 H 0.40 13.66 5.65 -92.71 -0.52 13.13 16 36 H 0.16 3.39 6.48 -2.91 -0.02 3.37 16 37 H 0.20 1.23 8.06 -2.91 -0.02 1.21 16 38 H 0.22 0.73 8.06 -2.91 -0.02 0.71 16 39 H 0.23 1.85 8.06 -2.91 -0.02 1.83 16 40 H 0.20 3.93 8.06 -2.91 -0.02 3.91 16 41 H 0.08 2.30 8.14 -2.39 -0.02 2.28 16 42 H 0.06 1.97 7.73 -2.39 -0.02 1.95 16 43 H 0.08 1.69 8.14 -2.38 -0.02 1.67 16 44 H 0.09 1.78 8.14 -2.39 -0.02 1.76 16 45 H 0.07 1.97 7.17 -2.39 -0.02 1.96 16 46 H 0.08 2.12 8.14 -2.39 -0.02 2.10 16 Total: -1.00 -84.90 367.20 3.24 -81.66 By element: Atomic # 1 Polarization: 25.98 SS G_CDS: 0.49 Total: 26.47 kcal Atomic # 6 Polarization: 12.65 SS G_CDS: 7.59 Total: 20.25 kcal Atomic # 7 Polarization: -140.58 SS G_CDS: -6.81 Total: -147.39 kcal Atomic # 8 Polarization: -26.72 SS G_CDS: -0.06 Total: -26.78 kcal Atomic # 14 Polarization: 43.77 SS G_CDS: 2.03 Total: 45.79 kcal Total: -84.90 3.24 -81.66 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000992333340.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 170.809 kcal (2) G-P(sol) polarization free energy of solvation -84.896 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 85.913 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.239 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.657 kcal (6) G-S(sol) free energy of system = (1) + (5) 89.152 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds