Wall clock time and date at job start Sat Apr 11 2020 06:03:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86804 * 120.00097 * 2 1 4 4 H 1.48494 * 109.47174 * 85.70178 * 3 2 1 5 5 H 1.48494 * 109.47007 * 205.70423 * 3 2 1 6 6 H 1.48497 * 109.46607 * 325.70233 * 3 2 1 7 7 C 1.38818 * 120.00180 * 180.27075 * 2 1 3 8 8 H 1.07996 * 120.00335 * 170.96288 * 7 2 1 9 9 N 1.36938 * 119.99515 * 350.96434 * 7 2 1 10 10 C 1.47364 * 125.58312 * 349.09161 * 9 7 2 11 11 C 1.54604 * 104.94924 * 204.59396 * 10 9 7 12 12 C 1.54914 * 101.87898 * 323.25267 * 11 10 9 13 13 N 1.46497 * 112.78133 * 273.35703 * 12 11 10 14 14 C 1.34773 * 120.00008 * 295.93487 * 13 12 11 15 15 O 1.21637 * 119.99896 * 359.97438 * 14 13 12 16 16 C 1.47225 * 119.99899 * 179.97438 * 14 13 12 17 17 C 1.38941 * 120.86359 * 359.72072 * 16 14 13 18 18 C 1.39743 * 119.29519 * 179.75353 * 17 16 14 19 19 C 1.35112 * 121.13923 * 0.54366 * 18 17 16 20 20 N 1.36144 * 121.72579 * 359.72162 * 19 18 17 21 21 C 1.36999 * 132.64703 * 180.02562 * 20 19 18 22 22 C 1.34957 * 107.15165 * 179.97438 * 21 20 19 23 23 N 1.33741 * 108.60639 * 359.97438 * 22 21 20 24 24 C 1.31976 * 109.17160 * 0.02562 * 23 22 21 25 25 C 1.55240 * 108.84230 * 146.89878 * 12 11 10 26 26 C 1.54223 * 106.82017 * 246.33300 * 25 12 11 27 27 C 1.54757 * 104.15900 * 25.64551 * 26 25 12 28 28 C 1.46983 * 125.57425 * 169.39231 * 9 7 2 29 29 H 1.08996 * 111.81724 * 300.92286 * 28 9 7 30 30 H 0.96994 * 120.00300 * 0.02562 * 1 2 3 31 31 H 1.08999 * 110.37097 * 323.53176 * 10 9 7 32 32 H 1.08996 * 110.37456 * 85.86370 * 10 9 7 33 33 H 1.09003 * 111.08348 * 205.02530 * 11 10 9 34 34 H 1.09003 * 110.78472 * 81.35079 * 11 10 9 35 35 H 0.96999 * 119.99824 * 115.93630 * 13 12 11 36 36 H 1.08001 * 120.35009 * 0.02562 * 17 16 14 37 37 H 1.07999 * 119.42949 * 180.26323 * 18 17 16 38 38 H 1.07999 * 119.13374 * 179.73886 * 19 18 17 39 39 H 1.07995 * 126.42222 * 359.95590 * 21 20 19 40 40 H 1.08006 * 125.69288 * 180.02562 * 22 21 20 41 41 H 1.08992 * 109.36167 * 127.30068 * 25 12 11 42 42 H 1.08995 * 110.56432 * 6.02444 * 25 12 11 43 43 H 1.09004 * 110.49481 * 266.97972 * 26 25 12 44 44 H 1.08996 * 110.61048 * 144.37273 * 26 25 12 45 45 H 1.09004 * 110.67163 * 203.76189 * 27 26 25 46 46 H 1.08996 * 110.81414 * 80.68817 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4069 2.0989 1.3961 5 1 3.5902 1.4156 -0.6072 6 1 1.4960 2.6247 -0.7889 7 6 2.0103 -1.2022 -0.0057 8 1 3.0802 -1.2073 -0.1526 9 7 1.3383 -2.3816 0.1750 10 6 -0.0644 -2.5117 0.6074 11 6 -0.1543 -3.9135 1.2532 12 6 0.7899 -4.7429 0.3475 13 7 0.1119 -5.2863 -0.8320 14 6 -0.8805 -6.1860 -0.6840 15 8 -1.2130 -6.5472 0.4289 16 6 -1.5622 -6.7316 -1.8694 17 6 -1.2008 -6.3272 -3.1486 18 6 -1.8663 -6.8702 -4.2510 19 6 -2.8602 -7.7716 -4.0926 20 7 -3.2536 -8.1944 -2.8598 21 6 -4.2130 -9.0799 -2.4446 22 6 -4.1661 -9.1144 -1.0963 23 7 -3.2083 -8.2783 -0.6811 24 6 -2.6435 -7.7110 -1.7304 25 6 1.4826 -5.8323 1.2098 26 6 2.9841 -5.4824 1.2490 27 6 3.0226 -3.9529 1.0163 28 6 1.9000 -3.7251 -0.0246 29 1 2.2572 -3.8673 -1.0446 30 1 -0.4850 0.8400 -0.0004 31 1 -0.3094 -1.7406 1.3378 32 1 -0.7335 -2.4487 -0.2508 33 1 -1.1729 -4.2996 1.2120 34 1 0.2108 -3.8905 2.2800 35 1 0.3774 -4.9985 -1.7195 36 1 -0.4110 -5.6043 -3.2897 37 1 -1.5842 -6.5606 -5.2464 38 1 -3.3555 -8.1672 -4.9671 39 1 -4.8817 -9.6442 -3.0776 40 1 -4.7962 -9.7172 -0.4591 41 1 1.3387 -6.8072 0.7443 42 1 1.0742 -5.8376 2.2204 43 1 3.5181 -6.0029 0.4540 44 1 3.4108 -5.7315 2.2206 45 1 3.9887 -3.6493 0.6129 46 1 2.8064 -3.4152 1.9394 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000992333346.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:03:28 Heat of formation + Delta-G solvation = 72.510790 kcal Electronic energy + Delta-G solvation = -30016.001763 eV Core-core repulsion = 26099.952384 eV Total energy + Delta-G solvation = -3916.049379 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -43.66109 -41.52710 -39.53630 -38.11481 -35.97400 -34.98341 -34.30529 -33.33135 -31.64473 -31.06635 -29.76935 -28.39147 -27.56573 -25.74019 -25.55851 -23.61122 -23.20037 -22.51492 -21.62522 -21.09768 -20.27685 -18.96988 -18.84499 -18.26058 -17.61363 -17.01614 -16.91616 -16.84183 -16.23408 -16.07837 -15.77617 -15.54916 -15.03676 -15.00616 -14.72356 -14.51813 -14.46020 -13.90565 -13.54059 -13.46177 -13.23735 -13.13818 -12.93617 -12.85051 -12.80346 -12.61365 -12.27583 -12.00191 -11.95078 -11.85731 -11.68523 -11.64339 -11.49024 -11.25077 -11.06143 -10.73387 -10.64883 -9.98599 -9.79241 -8.90881 -8.81844 -7.82642 -5.18192 -0.66942 0.31482 1.48472 1.50688 1.52245 1.58983 1.75540 1.98092 2.16590 2.52580 2.65977 3.13647 3.32665 3.36100 3.50195 3.64682 3.74353 3.86404 3.90144 3.94194 3.96403 4.33750 4.35971 4.42363 4.47206 4.50741 4.57573 4.61377 4.64851 4.74417 4.79549 4.88140 4.95082 4.96217 5.03447 5.10573 5.17031 5.23070 5.33624 5.42630 5.48152 5.54504 5.62504 5.64521 5.68825 5.75026 6.09199 6.22415 6.58085 6.98075 7.10372 7.28362 7.79850 8.47302 9.29078 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.015536 B = 0.003165 C = 0.002913 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1801.810278 B = 8844.273869 C = 9609.130122 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.951 5.951 2 C -0.066 4.066 3 Si 0.974 3.026 4 H -0.293 1.293 5 H -0.263 1.263 6 H -0.299 1.299 7 C -0.228 4.228 8 H 0.086 0.914 9 N -0.609 5.609 10 C 0.191 3.809 11 C -0.132 4.132 12 C 0.173 3.827 13 N -0.694 5.694 14 C 0.558 3.442 15 O -0.548 6.548 16 C -0.142 4.142 17 C -0.029 4.029 18 C -0.158 4.158 19 C 0.092 3.908 20 N -0.377 5.377 21 C -0.079 4.079 22 C -0.006 4.006 23 N -0.525 5.525 24 C 0.223 3.777 25 C -0.104 4.104 26 C -0.108 4.108 27 C -0.123 4.123 28 C 0.156 3.844 29 H 0.060 0.940 30 H 0.245 0.755 31 H 0.029 0.971 32 H -0.006 1.006 33 H 0.054 0.946 34 H 0.068 0.932 35 H 0.408 0.592 36 H 0.167 0.833 37 H 0.203 0.797 38 H 0.217 0.783 39 H 0.233 0.767 40 H 0.200 0.800 41 H 0.059 0.941 42 H 0.060 0.940 43 H 0.082 0.918 44 H 0.079 0.921 45 H 0.071 0.929 46 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.764 -19.489 -13.367 23.794 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.599 5.599 2 C -0.259 4.259 3 Si 0.803 3.197 4 H -0.221 1.221 5 H -0.187 1.187 6 H -0.226 1.226 7 C -0.357 4.357 8 H 0.104 0.896 9 N -0.333 5.333 10 C 0.065 3.935 11 C -0.172 4.172 12 C 0.086 3.914 13 N -0.346 5.346 14 C 0.346 3.654 15 O -0.426 6.426 16 C -0.148 4.148 17 C -0.053 4.053 18 C -0.178 4.178 19 C -0.029 4.029 20 N -0.051 5.051 21 C -0.208 4.208 22 C -0.154 4.154 23 N -0.245 5.245 24 C -0.024 4.024 25 C -0.143 4.143 26 C -0.146 4.146 27 C -0.163 4.163 28 C 0.049 3.951 29 H 0.078 0.922 30 H 0.054 0.946 31 H 0.047 0.953 32 H 0.012 0.988 33 H 0.073 0.927 34 H 0.087 0.913 35 H 0.246 0.754 36 H 0.185 0.815 37 H 0.220 0.780 38 H 0.233 0.767 39 H 0.249 0.751 40 H 0.217 0.783 41 H 0.078 0.922 42 H 0.079 0.921 43 H 0.101 0.899 44 H 0.097 0.903 45 H 0.089 0.911 46 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -2.904 -19.452 -11.792 22.932 hybrid contribution -0.336 1.335 -0.591 1.498 sum -3.240 -18.117 -12.383 22.182 Atomic orbital electron populations 1.70179 1.06503 1.25170 1.58093 1.25633 0.96312 1.01036 1.02882 0.85123 0.78068 0.79535 0.76987 1.22067 1.18723 1.22576 1.19379 0.91570 0.83437 1.41318 0.89595 1.44676 1.09321 1.00738 1.78572 1.20967 0.85606 0.92122 0.94785 1.23084 0.99080 0.96384 0.98605 1.21680 0.91610 0.92581 0.85542 1.45579 1.36162 1.43149 1.09753 1.17968 0.79636 0.79126 0.88691 1.90826 1.64569 1.60152 1.27064 1.20110 0.98698 1.01150 0.94816 1.22151 0.97544 0.95768 0.89859 1.21208 0.96724 0.98306 1.01559 1.22653 0.97102 0.96380 0.86805 1.43224 1.25172 1.29261 1.07408 1.23375 0.99002 1.01340 0.97040 1.23226 0.98282 0.99772 0.94117 1.70717 1.11996 1.13000 1.28758 1.21655 0.98227 1.00106 0.82400 1.22458 0.95941 0.96956 0.98924 1.22287 0.94480 0.95007 1.02834 1.22792 0.98633 0.95952 0.98944 1.22040 0.91936 0.83699 0.97380 0.92250 0.94621 0.95277 0.98783 0.92718 0.91346 0.75447 0.81530 0.77961 0.76672 0.75061 0.78348 0.92230 0.92112 0.89913 0.90268 0.91070 0.93001 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -57.43 10.69 21.65 0.23 -57.20 16 2 C -0.07 -3.67 5.40 84.86 0.46 -3.21 16 3 Si 0.97 45.24 29.56 68.60 2.03 47.27 16 4 H -0.29 -13.69 7.11 99.48 0.71 -12.99 16 5 H -0.26 -11.31 7.11 99.48 0.71 -10.61 16 6 H -0.30 -14.09 7.11 99.48 0.71 -13.38 16 7 C -0.23 -12.27 9.95 84.03 0.84 -11.43 16 8 H 0.09 4.36 7.84 -2.91 -0.02 4.34 16 9 N -0.61 -30.25 3.04 -664.21 -2.02 -32.26 16 10 C 0.19 9.89 5.40 86.76 0.47 10.36 16 11 C -0.13 -5.83 5.80 31.79 0.18 -5.65 16 12 C 0.17 6.40 0.78 5.76 0.00 6.40 16 13 N -0.69 -22.96 5.23 -416.63 -2.18 -25.14 16 14 C 0.56 20.25 6.98 86.61 0.60 20.86 16 15 O -0.55 -24.46 14.14 -4.15 -0.06 -24.52 16 16 C -0.14 -4.19 6.06 -18.58 -0.11 -4.30 16 17 C -0.03 -0.54 9.63 22.80 0.22 -0.32 16 18 C -0.16 -1.67 9.91 21.91 0.22 -1.45 16 19 C 0.09 1.01 10.88 83.30 0.91 1.92 16 20 N -0.38 -7.71 2.94 -347.21 -1.02 -8.74 16 21 C -0.08 -1.34 11.76 83.13 0.98 -0.37 16 22 C -0.01 -0.14 11.83 83.65 0.99 0.85 16 23 N -0.53 -18.70 10.70 -189.72 -2.03 -20.73 16 24 C 0.22 6.98 7.67 135.76 1.04 8.02 16 25 C -0.10 -3.43 5.34 31.78 0.17 -3.26 16 26 C -0.11 -2.99 6.84 31.61 0.22 -2.77 16 27 C -0.12 -4.21 6.22 31.80 0.20 -4.01 16 28 C 0.16 6.06 3.61 46.24 0.17 6.23 16 29 H 0.06 2.17 7.97 -2.39 -0.02 2.15 16 30 H 0.24 14.50 8.31 -92.71 -0.77 13.72 16 31 H 0.03 1.71 6.93 -2.39 -0.02 1.69 16 32 H -0.01 -0.33 8.07 -2.39 -0.02 -0.35 16 33 H 0.05 2.56 6.84 -2.39 -0.02 2.54 16 34 H 0.07 2.97 7.60 -2.39 -0.02 2.96 16 35 H 0.41 11.18 6.58 -92.71 -0.61 10.57 16 36 H 0.17 2.34 6.48 -2.91 -0.02 2.32 16 37 H 0.20 0.28 8.06 -2.91 -0.02 0.25 16 38 H 0.22 0.06 8.06 -2.91 -0.02 0.04 16 39 H 0.23 1.37 8.06 -2.91 -0.02 1.34 16 40 H 0.20 3.55 8.06 -2.91 -0.02 3.53 16 41 H 0.06 1.98 7.47 -2.39 -0.02 1.96 16 42 H 0.06 2.13 7.41 -2.39 -0.02 2.12 16 43 H 0.08 1.94 8.14 -2.38 -0.02 1.92 16 44 H 0.08 1.94 8.14 -2.39 -0.02 1.92 16 45 H 0.07 2.25 8.14 -2.38 -0.02 2.23 16 46 H 0.05 2.01 8.09 -2.39 -0.02 1.99 16 Total: -1.00 -86.08 367.92 2.90 -83.18 By element: Atomic # 1 Polarization: 19.87 SS G_CDS: 0.40 Total: 20.27 kcal Atomic # 6 Polarization: 10.32 SS G_CDS: 7.55 Total: 17.86 kcal Atomic # 7 Polarization: -137.05 SS G_CDS: -7.01 Total: -144.06 kcal Atomic # 8 Polarization: -24.46 SS G_CDS: -0.06 Total: -24.52 kcal Atomic # 14 Polarization: 45.24 SS G_CDS: 2.03 Total: 47.27 kcal Total: -86.08 2.90 -83.18 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000992333346.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 155.690 kcal (2) G-P(sol) polarization free energy of solvation -86.081 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.609 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.902 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.179 kcal (6) G-S(sol) free energy of system = (1) + (5) 72.511 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds