Wall clock time and date at job start Sat Apr 11 2020 06:03:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31613 * 1 3 3 Si 1.86796 * 120.00152 * 2 1 4 4 H 1.48502 * 109.47724 * 274.96987 * 3 2 1 5 5 H 1.48503 * 109.47076 * 34.96820 * 3 2 1 6 6 H 1.48496 * 109.47587 * 154.96634 * 3 2 1 7 7 C 1.38815 * 120.00137 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99842 * 185.69697 * 7 2 1 9 9 N 1.36938 * 119.99902 * 5.69647 * 7 2 1 10 10 C 1.49293 * 127.10330 * 352.75795 * 9 7 2 11 11 C 1.56976 * 106.43502 * 188.35802 * 10 9 7 12 12 C 1.52129 * 100.47110 * 23.90631 * 11 10 9 13 13 N 1.46498 * 111.08540 * 73.52848 * 12 11 10 14 14 C 1.34778 * 120.00168 * 71.69771 * 13 12 11 15 15 O 1.21636 * 119.99679 * 0.02562 * 14 13 12 16 16 C 1.47222 * 119.99981 * 179.97438 * 14 13 12 17 17 C 1.38942 * 120.85953 * 0.02562 * 16 14 13 18 18 C 1.39739 * 119.29078 * 180.02562 * 17 16 14 19 19 C 1.35113 * 121.14511 * 0.02562 * 18 17 16 20 20 N 1.36149 * 121.71888 * 359.97438 * 19 18 17 21 21 C 1.37001 * 132.64109 * 180.02562 * 20 19 18 22 22 C 1.34955 * 107.15287 * 179.97438 * 21 20 19 23 23 N 1.33747 * 108.60467 * 359.97438 * 22 21 20 24 24 C 1.31976 * 109.16912 * 0.02562 * 23 22 21 25 25 C 1.51227 * 122.55322 * 208.21038 * 12 11 10 26 26 C 1.55058 * 104.91757 * 140.89183 * 25 12 11 27 27 C 1.56278 * 105.91724 * 353.32946 * 26 25 12 28 28 C 1.42713 * 127.09823 * 172.76007 * 9 7 2 29 29 H 1.09000 * 108.17674 * 256.53956 * 28 9 7 30 30 H 0.96999 * 120.00460 * 359.97438 * 1 2 3 31 31 H 1.09003 * 110.04842 * 307.92721 * 10 9 7 32 32 H 1.08995 * 110.04877 * 69.40298 * 10 9 7 33 33 H 1.09007 * 111.67992 * 265.98214 * 11 10 9 34 34 H 1.09003 * 110.94166 * 141.52294 * 11 10 9 35 35 H 0.97000 * 119.99965 * 251.70026 * 13 12 11 36 36 H 1.07997 * 120.35645 * 0.04126 * 17 16 14 37 37 H 1.08008 * 119.42791 * 179.97438 * 18 17 16 38 38 H 1.07999 * 119.14161 * 180.02562 * 19 18 17 39 39 H 1.08002 * 126.42287 * 359.71054 * 21 20 19 40 40 H 1.07998 * 125.69849 * 180.02562 * 22 21 20 41 41 H 1.09000 * 110.40931 * 260.23081 * 25 12 11 42 42 H 1.08998 * 110.41181 * 22.66738 * 25 12 11 43 43 H 1.08997 * 110.48467 * 234.04633 * 26 25 12 44 44 H 1.09000 * 109.90741 * 112.30274 * 26 25 12 45 45 H 1.09002 * 110.97086 * 217.24242 * 27 26 25 46 46 H 1.09002 * 110.97185 * 93.47398 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.3927 2.1071 -1.3948 5 1 1.5041 2.6200 0.8024 6 1 3.5962 1.4122 0.5924 7 6 2.0102 -1.2022 -0.0005 8 1 3.0862 -1.2044 0.0923 9 7 1.3306 -2.3851 -0.1188 10 6 -0.1497 -2.5785 -0.1055 11 6 -0.3946 -4.1283 -0.0555 12 6 0.9160 -4.5956 0.5595 13 7 0.9744 -4.2697 1.9866 14 6 0.2062 -4.9453 2.8641 15 8 -0.5352 -5.8259 2.4711 16 6 0.2653 -4.6181 4.2983 17 6 1.1061 -3.6160 4.7666 18 6 1.1365 -3.3330 6.1347 19 6 0.3639 -4.0168 7.0071 20 7 -0.4756 -5.0068 6.5963 21 6 -1.3416 -5.8280 7.2691 22 6 -1.9238 -6.6292 6.3524 23 7 -1.4385 -6.3193 5.1452 24 6 -0.5611 -5.3411 5.2688 25 6 1.4985 -5.9650 0.2904 26 6 3.0264 -5.7317 0.1669 27 6 3.2278 -4.1824 0.2043 28 6 1.8912 -3.6875 -0.2801 29 1 1.7794 -3.9789 -1.3244 30 1 -0.4851 0.8400 0.0004 31 1 -0.5815 -2.0981 0.7724 32 1 -0.5888 -2.1639 -1.0129 33 1 -0.5324 -4.5466 -1.0526 34 1 -1.2396 -4.3685 0.5899 35 1 1.5658 -3.5677 2.2999 36 1 1.7293 -3.0616 4.0806 37 1 1.7897 -2.5548 6.5012 38 1 0.4128 -3.7710 8.0576 39 1 -1.5212 -5.8358 8.3340 40 1 -2.6593 -7.3925 6.5589 41 1 1.2769 -6.6413 1.1160 42 1 1.1097 -6.3663 -0.6455 43 1 3.3993 -6.1363 -0.7739 44 1 3.5421 -6.1978 1.0065 45 1 4.0257 -3.8762 -0.4723 46 1 3.4261 -3.8391 1.2197 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000992333355.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:03:31 Heat of formation + Delta-G solvation = 109.458695 kcal Electronic energy + Delta-G solvation = -30555.840706 eV Core-core repulsion = 26641.393508 eV Total energy + Delta-G solvation = -3914.447197 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -42.72111 -40.43346 -38.14379 -37.12076 -34.42215 -33.64416 -32.84447 -31.67218 -30.37823 -29.80414 -28.68522 -26.93613 -25.83706 -24.64158 -24.03010 -22.65084 -22.09744 -20.89980 -20.43677 -19.62469 -18.72969 -17.97375 -17.26651 -16.47710 -16.46984 -15.92928 -15.71790 -15.50535 -14.74727 -14.63741 -14.29466 -14.10565 -13.99309 -13.91578 -13.58112 -13.36178 -12.68542 -12.50109 -12.34919 -12.23504 -11.94440 -11.86343 -11.39294 -11.37227 -11.03259 -10.93454 -10.84301 -10.75514 -10.47042 -10.28657 -10.00723 -10.00212 -9.96272 -9.69776 -9.52621 -9.10435 -8.89312 -8.68000 -8.42765 -7.95280 -6.87382 -5.79459 -3.13339 0.29284 1.21144 2.42336 2.76457 3.06841 3.34403 3.40076 3.42481 3.54961 3.87116 4.07426 4.28359 4.42229 4.53989 4.63797 4.74325 4.83862 5.17169 5.27141 5.27754 5.34920 5.43753 5.45613 5.60671 5.66644 5.73526 5.82660 5.85548 5.87709 5.97150 6.02196 6.18779 6.26737 6.27443 6.34587 6.41197 6.47623 6.52443 6.56233 6.69549 6.85093 6.92697 6.93440 7.23400 7.55270 7.56458 7.75325 7.92876 8.07657 8.16689 8.74315 9.09673 9.76406 10.46991 11.33603 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.011681 B = 0.004080 C = 0.003467 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2396.496488 B = 6860.922676 C = 8073.278877 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.915 5.915 2 C -0.001 4.001 3 Si 0.907 3.093 4 H -0.289 1.289 5 H -0.292 1.292 6 H -0.281 1.281 7 C -0.234 4.234 8 H 0.079 0.921 9 N -0.585 5.585 10 C 0.181 3.819 11 C -0.140 4.140 12 C 0.136 3.864 13 N -0.686 5.686 14 C 0.558 3.442 15 O -0.511 6.511 16 C -0.082 4.082 17 C -0.058 4.058 18 C -0.149 4.149 19 C 0.074 3.926 20 N -0.372 5.372 21 C -0.104 4.104 22 C 0.025 3.975 23 N -0.459 5.459 24 C 0.255 3.745 25 C -0.113 4.113 26 C -0.117 4.117 27 C -0.114 4.114 28 C 0.158 3.842 29 H 0.025 0.975 30 H 0.253 0.747 31 H 0.058 0.942 32 H 0.039 0.961 33 H 0.067 0.933 34 H 0.068 0.932 35 H 0.400 0.600 36 H 0.152 0.848 37 H 0.157 0.843 38 H 0.163 0.837 39 H 0.182 0.818 40 H 0.180 0.820 41 H 0.071 0.929 42 H 0.070 0.930 43 H 0.062 0.938 44 H 0.058 0.942 45 H 0.064 0.936 46 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.419 -9.253 13.748 16.921 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.561 5.561 2 C -0.199 4.199 3 Si 0.738 3.262 4 H -0.216 1.216 5 H -0.219 1.219 6 H -0.206 1.206 7 C -0.362 4.362 8 H 0.097 0.903 9 N -0.308 5.308 10 C 0.057 3.943 11 C -0.179 4.179 12 C 0.048 3.952 13 N -0.338 5.338 14 C 0.343 3.657 15 O -0.387 6.387 16 C -0.088 4.088 17 C -0.082 4.082 18 C -0.170 4.170 19 C -0.049 4.049 20 N -0.045 5.045 21 C -0.234 4.234 22 C -0.125 4.125 23 N -0.177 5.177 24 C 0.008 3.992 25 C -0.151 4.151 26 C -0.155 4.155 27 C -0.153 4.153 28 C 0.047 3.953 29 H 0.042 0.958 30 H 0.064 0.936 31 H 0.076 0.924 32 H 0.057 0.943 33 H 0.085 0.915 34 H 0.087 0.913 35 H 0.236 0.764 36 H 0.169 0.831 37 H 0.174 0.826 38 H 0.180 0.820 39 H 0.199 0.801 40 H 0.197 0.803 41 H 0.090 0.910 42 H 0.088 0.912 43 H 0.081 0.919 44 H 0.076 0.924 45 H 0.083 0.917 46 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 2.560 -10.029 12.780 16.446 hybrid contribution 0.847 1.833 1.113 2.306 sum 3.407 -8.196 13.892 16.486 Atomic orbital electron populations 1.69933 1.04953 1.25219 1.56003 1.24813 0.95566 0.97604 1.01891 0.86189 0.78644 0.83825 0.77587 1.21627 1.21859 1.20633 1.19002 0.90700 0.82341 1.44164 0.90301 1.43676 1.01764 1.00239 1.85153 1.22113 0.83153 0.87985 1.01034 1.22925 0.96271 0.99126 0.99600 1.21514 0.98538 0.95090 0.80047 1.45579 1.43358 1.38142 1.06695 1.17470 0.81277 0.82770 0.84208 1.90838 1.38100 1.30726 1.79063 1.20399 0.97807 0.97497 0.93140 1.21780 0.96104 0.94351 0.96010 1.20666 1.01532 1.01928 0.92828 1.21609 0.92422 0.89942 1.00939 1.42928 1.27790 1.24275 1.09554 1.22628 1.01205 0.99842 0.99705 1.22684 1.01280 1.00596 0.87968 1.70842 1.10388 1.12492 1.24009 1.21592 0.99220 0.96752 0.81602 1.21763 0.94791 0.96512 1.02075 1.22710 0.95968 0.95770 1.01034 1.21846 0.97848 0.94412 1.01190 1.20853 0.91635 0.86912 0.95858 0.95812 0.93641 0.92363 0.94311 0.91471 0.91285 0.76361 0.83080 0.82588 0.81961 0.80053 0.80268 0.91033 0.91178 0.91900 0.92352 0.91747 0.91809 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -25.82 10.61 55.49 0.59 -25.23 16 2 C 0.00 -0.04 5.49 -17.43 -0.10 -0.14 16 3 Si 0.91 20.99 29.56 -169.99 -5.02 15.97 16 4 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 5 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 6 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 7 C -0.23 -6.00 10.27 -15.06 -0.15 -6.15 16 8 H 0.08 1.94 7.83 -52.49 -0.41 1.53 16 9 N -0.58 -13.79 3.10 -162.19 -0.50 -14.30 16 10 C 0.18 4.32 5.30 -0.34 0.00 4.31 16 11 C -0.14 -2.85 6.26 -25.02 -0.16 -3.01 16 12 C 0.14 2.50 0.42 -130.71 -0.05 2.45 16 13 N -0.69 -12.18 4.31 -47.70 -0.21 -12.38 16 14 C 0.56 10.43 7.08 -12.61 -0.09 10.34 16 15 O -0.51 -11.14 14.35 5.25 0.08 -11.06 16 16 C -0.08 -1.34 6.06 -102.64 -0.62 -1.96 16 17 C -0.06 -0.73 9.63 -38.76 -0.37 -1.10 16 18 C -0.15 -1.39 9.91 -40.13 -0.40 -1.79 16 19 C 0.07 0.69 10.88 -16.75 -0.18 0.50 16 20 N -0.37 -4.71 2.94 -61.10 -0.18 -4.89 16 21 C -0.10 -1.13 11.76 -16.41 -0.19 -1.32 16 22 C 0.03 0.33 11.83 -17.88 -0.21 0.12 16 23 N -0.46 -8.20 10.70 -11.32 -0.12 -8.32 16 24 C 0.26 4.25 7.67 -154.14 -1.18 3.07 16 25 C -0.11 -1.83 6.01 -26.54 -0.16 -1.99 16 26 C -0.12 -1.65 6.91 -23.88 -0.17 -1.82 16 27 C -0.11 -1.85 6.45 -26.21 -0.17 -2.02 16 28 C 0.16 3.09 2.61 -68.71 -0.18 2.91 16 29 H 0.02 0.50 7.99 -51.93 -0.41 0.09 16 30 H 0.25 7.02 8.31 -40.82 -0.34 6.68 16 31 H 0.06 1.55 7.32 -51.93 -0.38 1.16 16 32 H 0.04 1.02 7.82 -51.93 -0.41 0.61 16 33 H 0.07 1.27 8.14 -51.93 -0.42 0.85 16 34 H 0.07 1.48 7.17 -51.93 -0.37 1.10 16 35 H 0.40 6.82 5.89 -40.82 -0.24 6.58 16 36 H 0.15 1.73 6.48 -52.49 -0.34 1.39 16 37 H 0.16 0.93 8.06 -52.48 -0.42 0.50 16 38 H 0.16 0.83 8.06 -52.49 -0.42 0.41 16 39 H 0.18 1.17 8.06 -52.49 -0.42 0.74 16 40 H 0.18 1.70 8.06 -52.49 -0.42 1.28 16 41 H 0.07 1.25 6.84 -51.93 -0.36 0.89 16 42 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 43 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 44 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 45 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 46 H 0.06 1.01 7.38 -51.93 -0.38 0.63 16 LS Contribution 367.40 15.07 5.54 5.54 Total: -1.00 -34.16 367.40 -10.46 -44.62 By element: Atomic # 1 Polarization: 13.91 SS G_CDS: -6.24 Total: 7.66 kcal Atomic # 6 Polarization: 6.79 SS G_CDS: -4.39 Total: 2.40 kcal Atomic # 7 Polarization: -64.70 SS G_CDS: -0.42 Total: -65.12 kcal Atomic # 8 Polarization: -11.14 SS G_CDS: 0.08 Total: -11.06 kcal Atomic # 14 Polarization: 20.99 SS G_CDS: -5.02 Total: 15.97 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -34.16 -10.46 -44.62 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000992333355.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 154.078 kcal (2) G-P(sol) polarization free energy of solvation -34.156 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 119.923 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.464 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.620 kcal (6) G-S(sol) free energy of system = (1) + (5) 109.459 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds