Wall clock time and date at job start Sat Apr 11 2020 06:03:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31613 * 1 3 3 Si 1.86796 * 120.00152 * 2 1 4 4 H 1.48502 * 109.47724 * 274.96987 * 3 2 1 5 5 H 1.48503 * 109.47076 * 34.96820 * 3 2 1 6 6 H 1.48496 * 109.47587 * 154.96634 * 3 2 1 7 7 C 1.38815 * 120.00137 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99842 * 185.69697 * 7 2 1 9 9 N 1.36938 * 119.99902 * 5.69647 * 7 2 1 10 10 C 1.49293 * 127.10330 * 352.75795 * 9 7 2 11 11 C 1.56976 * 106.43502 * 188.35802 * 10 9 7 12 12 C 1.52129 * 100.47110 * 23.90631 * 11 10 9 13 13 N 1.46498 * 111.08540 * 73.52848 * 12 11 10 14 14 C 1.34778 * 120.00168 * 71.69771 * 13 12 11 15 15 O 1.21636 * 119.99679 * 0.02562 * 14 13 12 16 16 C 1.47222 * 119.99981 * 179.97438 * 14 13 12 17 17 C 1.38942 * 120.85953 * 0.02562 * 16 14 13 18 18 C 1.39739 * 119.29078 * 180.02562 * 17 16 14 19 19 C 1.35113 * 121.14511 * 0.02562 * 18 17 16 20 20 N 1.36149 * 121.71888 * 359.97438 * 19 18 17 21 21 C 1.37001 * 132.64109 * 180.02562 * 20 19 18 22 22 C 1.34955 * 107.15287 * 179.97438 * 21 20 19 23 23 N 1.33747 * 108.60467 * 359.97438 * 22 21 20 24 24 C 1.31976 * 109.16912 * 0.02562 * 23 22 21 25 25 C 1.51227 * 122.55322 * 208.21038 * 12 11 10 26 26 C 1.55058 * 104.91757 * 140.89183 * 25 12 11 27 27 C 1.56278 * 105.91724 * 353.32946 * 26 25 12 28 28 C 1.42713 * 127.09823 * 172.76007 * 9 7 2 29 29 H 1.09000 * 108.17674 * 256.53956 * 28 9 7 30 30 H 0.96999 * 120.00460 * 359.97438 * 1 2 3 31 31 H 1.09003 * 110.04842 * 307.92721 * 10 9 7 32 32 H 1.08995 * 110.04877 * 69.40298 * 10 9 7 33 33 H 1.09007 * 111.67992 * 265.98214 * 11 10 9 34 34 H 1.09003 * 110.94166 * 141.52294 * 11 10 9 35 35 H 0.97000 * 119.99965 * 251.70026 * 13 12 11 36 36 H 1.07997 * 120.35645 * 0.04126 * 17 16 14 37 37 H 1.08008 * 119.42791 * 179.97438 * 18 17 16 38 38 H 1.07999 * 119.14161 * 180.02562 * 19 18 17 39 39 H 1.08002 * 126.42287 * 359.71054 * 21 20 19 40 40 H 1.07998 * 125.69849 * 180.02562 * 22 21 20 41 41 H 1.09000 * 110.40931 * 260.23081 * 25 12 11 42 42 H 1.08998 * 110.41181 * 22.66738 * 25 12 11 43 43 H 1.08997 * 110.48467 * 234.04633 * 26 25 12 44 44 H 1.09000 * 109.90741 * 112.30274 * 26 25 12 45 45 H 1.09002 * 110.97086 * 217.24242 * 27 26 25 46 46 H 1.09002 * 110.97185 * 93.47398 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.3927 2.1071 -1.3948 5 1 1.5041 2.6200 0.8024 6 1 3.5962 1.4122 0.5924 7 6 2.0102 -1.2022 -0.0005 8 1 3.0862 -1.2044 0.0923 9 7 1.3306 -2.3851 -0.1188 10 6 -0.1497 -2.5785 -0.1055 11 6 -0.3946 -4.1283 -0.0555 12 6 0.9160 -4.5956 0.5595 13 7 0.9744 -4.2697 1.9866 14 6 0.2062 -4.9453 2.8641 15 8 -0.5352 -5.8259 2.4711 16 6 0.2653 -4.6181 4.2983 17 6 1.1061 -3.6160 4.7666 18 6 1.1365 -3.3330 6.1347 19 6 0.3639 -4.0168 7.0071 20 7 -0.4756 -5.0068 6.5963 21 6 -1.3416 -5.8280 7.2691 22 6 -1.9238 -6.6292 6.3524 23 7 -1.4385 -6.3193 5.1452 24 6 -0.5611 -5.3411 5.2688 25 6 1.4985 -5.9650 0.2904 26 6 3.0264 -5.7317 0.1669 27 6 3.2278 -4.1824 0.2043 28 6 1.8912 -3.6875 -0.2801 29 1 1.7794 -3.9789 -1.3244 30 1 -0.4851 0.8400 0.0004 31 1 -0.5815 -2.0981 0.7724 32 1 -0.5888 -2.1639 -1.0129 33 1 -0.5324 -4.5466 -1.0526 34 1 -1.2396 -4.3685 0.5899 35 1 1.5658 -3.5677 2.2999 36 1 1.7293 -3.0616 4.0806 37 1 1.7897 -2.5548 6.5012 38 1 0.4128 -3.7710 8.0576 39 1 -1.5212 -5.8358 8.3340 40 1 -2.6593 -7.3925 6.5589 41 1 1.2769 -6.6413 1.1160 42 1 1.1097 -6.3663 -0.6455 43 1 3.3993 -6.1363 -0.7739 44 1 3.5421 -6.1978 1.0065 45 1 4.0257 -3.8762 -0.4723 46 1 3.4261 -3.8391 1.2197 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000992333355.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:03:30 Heat of formation + Delta-G solvation = 88.388872 kcal Electronic energy + Delta-G solvation = -30556.754362 eV Core-core repulsion = 26641.393508 eV Total energy + Delta-G solvation = -3915.360853 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -43.66074 -41.94007 -39.54396 -38.10761 -36.14823 -34.81523 -34.19411 -33.46275 -31.69190 -31.06954 -29.70578 -28.54473 -27.33780 -25.98635 -25.61766 -23.61827 -23.15858 -22.29140 -21.85984 -21.21947 -20.17974 -19.09456 -18.37056 -18.22009 -17.58649 -17.23869 -16.91494 -16.45216 -16.32575 -16.11974 -15.73113 -15.67181 -15.32758 -14.98689 -14.91303 -14.46952 -14.16608 -14.06568 -13.60105 -13.45239 -13.10740 -13.02514 -12.99569 -12.85118 -12.83315 -12.64554 -12.16116 -12.09195 -12.01652 -11.89802 -11.76463 -11.54713 -11.35315 -11.13581 -10.95682 -10.70911 -10.58771 -9.94274 -9.78488 -8.90069 -8.84423 -7.82509 -5.18020 -0.66062 0.30864 1.49990 1.52666 1.54006 1.60570 1.79411 1.98553 2.27517 2.52933 2.68661 3.09723 3.14183 3.39103 3.47066 3.72344 3.77276 3.86688 3.90646 3.91416 4.10421 4.25778 4.35335 4.42785 4.43470 4.50688 4.55907 4.58675 4.63619 4.74976 4.81809 4.93817 4.95592 4.99517 5.03313 5.08031 5.12512 5.23456 5.30213 5.41986 5.49437 5.59136 5.59807 5.64916 5.68327 5.80303 6.08976 6.19309 6.66971 6.98123 7.05752 7.35250 7.78643 8.52596 9.30754 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.011681 B = 0.004080 C = 0.003467 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2396.496488 B = 6860.922676 C = 8073.278877 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.952 5.952 2 C -0.060 4.060 3 Si 0.973 3.027 4 H -0.296 1.296 5 H -0.301 1.301 6 H -0.259 1.259 7 C -0.232 4.232 8 H 0.094 0.906 9 N -0.595 5.595 10 C 0.196 3.804 11 C -0.131 4.131 12 C 0.141 3.859 13 N -0.683 5.683 14 C 0.557 3.443 15 O -0.556 6.556 16 C -0.139 4.139 17 C -0.034 4.034 18 C -0.158 4.158 19 C 0.092 3.908 20 N -0.377 5.377 21 C -0.079 4.079 22 C -0.005 4.005 23 N -0.523 5.523 24 C 0.224 3.776 25 C -0.109 4.109 26 C -0.102 4.102 27 C -0.108 4.108 28 C 0.150 3.850 29 H 0.019 0.981 30 H 0.245 0.755 31 H 0.022 0.978 32 H 0.004 0.996 33 H 0.080 0.920 34 H 0.051 0.949 35 H 0.402 0.598 36 H 0.156 0.844 37 H 0.200 0.800 38 H 0.218 0.782 39 H 0.234 0.766 40 H 0.202 0.798 41 H 0.058 0.942 42 H 0.077 0.923 43 H 0.085 0.915 44 H 0.075 0.925 45 H 0.076 0.924 46 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.306 -9.083 16.772 20.089 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.600 5.600 2 C -0.254 4.254 3 Si 0.802 3.198 4 H -0.224 1.224 5 H -0.228 1.228 6 H -0.183 1.183 7 C -0.360 4.360 8 H 0.111 0.889 9 N -0.318 5.318 10 C 0.072 3.928 11 C -0.170 4.170 12 C 0.053 3.947 13 N -0.334 5.334 14 C 0.344 3.656 15 O -0.435 6.435 16 C -0.145 4.145 17 C -0.058 4.058 18 C -0.178 4.178 19 C -0.029 4.029 20 N -0.050 5.050 21 C -0.208 4.208 22 C -0.154 4.154 23 N -0.242 5.242 24 C -0.024 4.024 25 C -0.148 4.148 26 C -0.140 4.140 27 C -0.146 4.146 28 C 0.041 3.959 29 H 0.036 0.964 30 H 0.054 0.946 31 H 0.041 0.959 32 H 0.022 0.978 33 H 0.098 0.902 34 H 0.070 0.930 35 H 0.240 0.760 36 H 0.174 0.826 37 H 0.217 0.783 38 H 0.235 0.765 39 H 0.250 0.750 40 H 0.219 0.781 41 H 0.077 0.923 42 H 0.096 0.904 43 H 0.104 0.896 44 H 0.094 0.906 45 H 0.094 0.906 46 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 5.495 -9.883 15.820 19.445 hybrid contribution -0.089 1.782 0.278 1.806 sum 5.406 -8.100 16.097 18.814 Atomic orbital electron populations 1.70158 1.06613 1.25197 1.58064 1.25601 0.96230 1.00887 1.02640 0.85140 0.78234 0.79575 0.76855 1.22365 1.22779 1.18318 1.19436 0.91420 0.82956 1.42194 0.88858 1.43776 1.01610 1.01483 1.84970 1.21731 0.83707 0.89792 0.97614 1.22776 0.97185 0.96745 1.00295 1.21478 0.96510 0.96316 0.80422 1.45513 1.43425 1.38150 1.06309 1.17921 0.80215 0.81859 0.85582 1.90788 1.39899 1.32717 1.80116 1.20186 1.01662 1.01000 0.91691 1.22070 0.93751 0.91951 0.98052 1.21171 1.02472 1.03094 0.91083 1.22607 0.89599 0.87268 1.03446 1.43228 1.28434 1.25070 1.08304 1.23395 0.98691 0.97436 1.01236 1.23248 1.02518 1.02222 0.87380 1.70716 1.12229 1.14340 1.26947 1.21606 0.99872 0.97401 0.83472 1.21750 0.96563 0.94573 1.01906 1.22643 0.94001 0.94289 1.03083 1.21854 0.95760 0.95534 1.01480 1.21042 0.94236 0.84882 0.95760 0.96407 0.94622 0.95915 0.97771 0.90163 0.93043 0.76043 0.82611 0.78281 0.76506 0.74968 0.78141 0.92335 0.90402 0.89609 0.90594 0.90575 0.91389 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -56.03 10.61 21.65 0.23 -55.80 16 2 C -0.06 -3.25 5.49 84.86 0.47 -2.78 16 3 Si 0.97 43.38 29.56 68.60 2.03 45.40 16 4 H -0.30 -13.44 7.11 99.48 0.71 -12.73 16 5 H -0.30 -13.72 7.11 99.48 0.71 -13.01 16 6 H -0.26 -10.51 7.11 99.48 0.71 -9.80 16 7 C -0.23 -11.88 10.27 84.03 0.86 -11.01 16 8 H 0.09 4.44 7.83 -2.91 -0.02 4.42 16 9 N -0.60 -28.68 3.10 -667.05 -2.07 -30.75 16 10 C 0.20 9.96 5.30 87.23 0.46 10.42 16 11 C -0.13 -5.64 6.26 31.70 0.20 -5.45 16 12 C 0.14 5.30 0.42 4.33 0.00 5.30 16 13 N -0.68 -25.09 4.31 -423.06 -1.82 -26.91 16 14 C 0.56 22.06 7.08 86.60 0.61 22.68 16 15 O -0.56 -26.06 14.35 -4.14 -0.06 -26.12 16 16 C -0.14 -4.67 6.06 -18.58 -0.11 -4.79 16 17 C -0.03 -0.82 9.63 22.80 0.22 -0.60 16 18 C -0.16 -2.37 9.91 21.91 0.22 -2.16 16 19 C 0.09 1.31 10.88 83.30 0.91 2.21 16 20 N -0.38 -8.66 2.94 -347.21 -1.02 -9.68 16 21 C -0.08 -1.48 11.76 83.13 0.98 -0.50 16 22 C -0.01 -0.14 11.83 83.65 0.99 0.85 16 23 N -0.52 -19.55 10.70 -189.72 -2.03 -21.58 16 24 C 0.22 7.59 7.67 135.76 1.04 8.63 16 25 C -0.11 -3.51 6.01 30.72 0.18 -3.32 16 26 C -0.10 -2.64 6.91 32.44 0.22 -2.41 16 27 C -0.11 -3.26 6.45 30.93 0.20 -3.06 16 28 C 0.15 5.83 2.61 46.47 0.12 5.96 16 29 H 0.02 0.75 7.99 -2.39 -0.02 0.73 16 30 H 0.24 14.20 8.31 -92.71 -0.77 13.42 16 31 H 0.02 1.29 7.32 -2.39 -0.02 1.28 16 32 H 0.00 0.23 7.82 -2.39 -0.02 0.21 16 33 H 0.08 3.19 8.14 -2.38 -0.02 3.17 16 34 H 0.05 2.39 7.17 -2.39 -0.02 2.37 16 35 H 0.40 13.99 5.89 -92.71 -0.55 13.44 16 36 H 0.16 3.43 6.48 -2.91 -0.02 3.41 16 37 H 0.20 1.24 8.06 -2.91 -0.02 1.22 16 38 H 0.22 0.65 8.06 -2.91 -0.02 0.62 16 39 H 0.23 1.71 8.06 -2.91 -0.02 1.69 16 40 H 0.20 3.77 8.06 -2.91 -0.02 3.75 16 41 H 0.06 2.06 6.84 -2.39 -0.02 2.05 16 42 H 0.08 2.35 8.14 -2.39 -0.02 2.34 16 43 H 0.09 1.88 8.14 -2.39 -0.02 1.86 16 44 H 0.08 1.74 8.14 -2.39 -0.02 1.73 16 45 H 0.08 2.15 8.14 -2.39 -0.02 2.13 16 46 H 0.07 2.00 7.38 -2.39 -0.02 1.98 16 Total: -1.00 -82.50 367.40 3.29 -79.20 By element: Atomic # 1 Polarization: 25.79 SS G_CDS: 0.47 Total: 26.26 kcal Atomic # 6 Polarization: 12.39 SS G_CDS: 7.57 Total: 19.97 kcal Atomic # 7 Polarization: -138.00 SS G_CDS: -6.71 Total: -144.72 kcal Atomic # 8 Polarization: -26.06 SS G_CDS: -0.06 Total: -26.12 kcal Atomic # 14 Polarization: 43.38 SS G_CDS: 2.03 Total: 45.40 kcal Total: -82.50 3.29 -79.20 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000992333355.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 167.593 kcal (2) G-P(sol) polarization free energy of solvation -82.496 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 85.097 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.292 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.204 kcal (6) G-S(sol) free energy of system = (1) + (5) 88.389 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds