Wall clock time and date at job start Sat Apr 11 2020 06:03:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31610 * 1 3 3 Si 1.86797 * 120.00375 * 2 1 4 4 H 1.48499 * 109.47208 * 269.99847 * 3 2 1 5 5 H 1.48507 * 109.47058 * 29.99735 * 3 2 1 6 6 H 1.48503 * 109.47489 * 149.99613 * 3 2 1 7 7 C 1.38812 * 119.99987 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00500 * 180.02562 * 7 2 1 9 9 N 1.36943 * 119.99994 * 0.02562 * 7 2 1 10 10 C 1.49290 * 127.10259 * 0.02562 * 9 7 2 11 11 C 1.56235 * 106.51040 * 188.64301 * 10 9 7 12 12 C 1.52130 * 100.80476 * 23.45152 * 11 10 9 13 13 N 1.46500 * 111.09123 * 73.95725 * 12 11 10 14 14 C 1.34773 * 119.99534 * 71.69831 * 13 12 11 15 15 O 1.21588 * 120.00551 * 359.97438 * 14 13 12 16 16 C 1.47529 * 119.99934 * 180.02562 * 14 13 12 17 17 C 1.39446 * 120.24511 * 359.71687 * 16 14 13 18 18 C 1.38289 * 120.28075 * 179.78720 * 17 16 14 19 19 C 1.37878 * 120.72616 * 0.47395 * 18 17 16 20 20 C 1.39687 * 120.10618 * 359.78723 * 19 18 17 21 21 N 1.35859 * 133.50844 * 179.97438 * 20 19 18 22 22 C 1.30090 * 109.53245 * 179.97438 * 21 20 19 23 23 N 1.36115 * 110.05051 * 0.02562 * 22 21 20 24 24 H 0.97000 * 126.31046 * 180.02562 * 23 22 21 25 25 C 1.37510 * 107.38566 * 359.97438 * 23 22 21 26 26 C 1.51233 * 122.11447 * 208.79490 * 12 11 10 27 27 C 1.55753 * 104.60792 * 141.29646 * 26 12 11 28 28 C 1.56281 * 105.90950 * 352.70440 * 27 26 12 29 29 C 1.42702 * 127.10204 * 179.97438 * 9 7 2 30 30 H 1.09006 * 108.17284 * 255.88473 * 29 9 7 31 31 H 0.97003 * 119.99890 * 0.02562 * 1 2 3 32 32 H 1.08996 * 110.04984 * 307.90708 * 10 9 7 33 33 H 1.09004 * 110.04947 * 69.32667 * 10 9 7 34 34 H 1.08996 * 111.14579 * 141.33494 * 11 10 9 35 35 H 1.09000 * 111.15053 * 265.52080 * 11 10 9 36 36 H 0.97000 * 120.00156 * 251.69100 * 13 12 11 37 37 H 1.07993 * 119.85960 * 0.02562 * 17 16 14 38 38 H 1.08000 * 119.63868 * 180.21408 * 18 17 16 39 39 H 1.07998 * 119.94830 * 179.76163 * 19 18 17 40 40 H 1.07997 * 124.96969 * 179.97438 * 22 21 20 41 41 H 1.09001 * 110.40808 * 260.04757 * 26 12 11 42 42 H 1.08996 * 110.40556 * 22.36370 * 26 12 11 43 43 H 1.08998 * 110.15385 * 233.60143 * 27 26 12 44 44 H 1.09012 * 110.19242 * 111.82241 * 27 26 12 45 45 H 1.09002 * 110.97179 * 217.64627 * 28 27 26 46 46 H 1.09003 * 110.97289 * 93.91881 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6176 0.0000 4 1 2.4978 2.0463 -1.4001 5 1 1.4476 2.6527 0.7000 6 1 3.5477 1.4401 0.7001 7 6 2.0102 -1.2021 0.0005 8 1 3.0902 -1.2022 0.0010 9 7 1.3254 -2.3881 0.0005 10 6 -0.1560 -2.5727 -0.0005 11 6 -0.4137 -4.0970 0.2251 12 6 0.8797 -4.5060 0.9138 13 7 0.9137 -4.0279 2.2982 14 6 0.1214 -4.5980 3.2276 15 8 -0.6219 -5.5087 2.9171 16 6 0.1552 -4.1162 4.6216 17 6 1.0092 -3.0753 4.9845 18 6 1.0383 -2.6201 6.2900 19 6 0.2342 -3.1915 7.2533 20 6 -0.6261 -4.2392 6.9166 21 7 -1.5143 -4.9845 7.6248 22 6 -2.0793 -5.8522 6.8373 23 7 -1.5917 -5.7221 5.5731 24 1 -1.8499 -6.2492 4.8008 25 6 -0.6666 -4.7049 5.5922 26 6 1.4456 -5.9036 0.7970 27 6 2.9856 -5.6961 0.6902 28 6 3.2022 -4.1536 0.5632 29 6 1.8807 -3.7027 0.0005 30 1 1.7803 -4.1141 -1.0039 31 1 -0.4850 0.8401 -0.0004 32 1 -0.6052 -1.9943 0.8067 33 1 -0.5708 -2.2606 -0.9590 34 1 -1.2735 -4.2585 0.8751 35 1 -0.5372 -4.6196 -0.7235 36 1 1.5065 -3.3012 2.5459 37 1 1.6478 -2.6201 4.2420 38 1 1.7012 -1.8110 6.5589 39 1 0.2699 -2.8287 8.2699 40 1 -2.8254 -6.5710 7.1422 41 1 1.2019 -6.4878 1.6844 42 1 1.0631 -6.3950 -0.0975 43 1 3.3726 -6.2038 -0.1933 44 1 3.4790 -6.0722 1.5866 45 1 4.0162 -3.9294 -0.1262 46 1 3.3851 -3.7036 1.5390 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000992376104.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:03:41 Heat of formation + Delta-G solvation = 78.127154 kcal Electronic energy + Delta-G solvation = -30624.243334 eV Core-core repulsion = 26708.437499 eV Total energy + Delta-G solvation = -3915.805835 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -42.17897 -40.51790 -38.32783 -36.93100 -34.48741 -33.21220 -33.03170 -31.80998 -30.40764 -29.64376 -29.24308 -26.99657 -25.88561 -24.24213 -23.95742 -22.45143 -22.03402 -20.76434 -20.48786 -19.66739 -18.81451 -18.08376 -17.35740 -16.58176 -16.52616 -15.81613 -15.38906 -15.28291 -14.84821 -14.72631 -14.41573 -14.06582 -13.97624 -13.92412 -13.62519 -13.46767 -12.68102 -12.39439 -12.09037 -12.04238 -11.87713 -11.78282 -11.47144 -11.42419 -11.05779 -10.97104 -10.86263 -10.71659 -10.55397 -10.34631 -10.27435 -10.08719 -10.01888 -9.75466 -9.65083 -9.22200 -8.72565 -8.62292 -8.46404 -8.16792 -6.93269 -5.80585 -3.15962 0.59736 1.47176 2.52782 2.97432 3.27490 3.34064 3.39486 3.41791 3.52127 3.96312 4.16770 4.39442 4.55959 4.65436 4.93225 4.95030 5.16228 5.17822 5.24746 5.28167 5.39218 5.42052 5.54553 5.66995 5.68815 5.76733 5.88646 5.91342 5.94138 6.09415 6.18376 6.24091 6.24809 6.31253 6.35854 6.37494 6.39194 6.44680 6.59272 6.72865 6.75990 6.84002 7.10902 7.32876 7.45442 7.54221 7.71665 7.75484 7.95942 8.13223 8.56026 9.06832 9.73532 10.42121 11.31409 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.011390 B = 0.004205 C = 0.003534 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2457.752917 B = 6657.014642 C = 7920.818891 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C -0.002 4.002 3 Si 0.909 3.091 4 H -0.289 1.289 5 H -0.291 1.291 6 H -0.281 1.281 7 C -0.235 4.235 8 H 0.080 0.920 9 N -0.584 5.584 10 C 0.178 3.822 11 C -0.138 4.138 12 C 0.130 3.870 13 N -0.678 5.678 14 C 0.561 3.439 15 O -0.562 6.562 16 C -0.125 4.125 17 C -0.057 4.057 18 C -0.136 4.136 19 C -0.041 4.041 20 C 0.030 3.970 21 N -0.497 5.497 22 C 0.255 3.745 23 N -0.584 5.584 24 H 0.434 0.566 25 C 0.101 3.899 26 C -0.111 4.111 27 C -0.117 4.117 28 C -0.114 4.114 29 C 0.159 3.841 30 H 0.023 0.977 31 H 0.253 0.747 32 H 0.065 0.935 33 H 0.035 0.965 34 H 0.066 0.934 35 H 0.065 0.935 36 H 0.404 0.596 37 H 0.138 0.862 38 H 0.137 0.863 39 H 0.132 0.868 40 H 0.216 0.784 41 H 0.068 0.932 42 H 0.070 0.930 43 H 0.062 0.938 44 H 0.059 0.941 45 H 0.065 0.935 46 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.048 -11.404 9.830 15.092 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.563 5.563 2 C -0.199 4.199 3 Si 0.739 3.261 4 H -0.216 1.216 5 H -0.217 1.217 6 H -0.206 1.206 7 C -0.363 4.363 8 H 0.098 0.902 9 N -0.307 5.307 10 C 0.054 3.946 11 C -0.177 4.177 12 C 0.042 3.958 13 N -0.328 5.328 14 C 0.349 3.651 15 O -0.443 6.443 16 C -0.131 4.131 17 C -0.078 4.078 18 C -0.156 4.156 19 C -0.061 4.061 20 C -0.088 4.088 21 N -0.217 5.217 22 C -0.033 4.033 23 N -0.196 5.196 24 H 0.276 0.724 25 C -0.013 4.013 26 C -0.149 4.149 27 C -0.155 4.155 28 C -0.153 4.153 29 C 0.048 3.952 30 H 0.040 0.960 31 H 0.064 0.936 32 H 0.083 0.917 33 H 0.053 0.947 34 H 0.085 0.915 35 H 0.084 0.916 36 H 0.241 0.759 37 H 0.155 0.845 38 H 0.155 0.845 39 H 0.150 0.850 40 H 0.233 0.767 41 H 0.087 0.913 42 H 0.089 0.911 43 H 0.081 0.919 44 H 0.078 0.922 45 H 0.083 0.917 46 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 0.350 -11.621 10.456 15.637 hybrid contribution 0.566 0.944 -1.206 1.633 sum 0.916 -10.677 9.250 14.157 Atomic orbital electron populations 1.69914 1.04943 1.25250 1.56214 1.24790 0.95589 0.97649 1.01846 0.86180 0.78629 0.83637 0.77641 1.21618 1.21682 1.20610 1.19008 0.90279 0.82208 1.44777 0.90250 1.43671 1.01678 0.99221 1.86136 1.22018 0.83215 0.88558 1.00811 1.22783 0.96317 0.99560 0.99062 1.21570 0.98772 0.94095 0.81327 1.45596 1.41826 1.37109 1.08250 1.18026 0.80220 0.82297 0.84578 1.90626 1.40978 1.30857 1.81882 1.19010 1.00958 1.00630 0.92511 1.21285 0.96021 0.93515 0.96941 1.20858 1.00933 1.01406 0.92451 1.20427 0.92947 0.92734 0.99945 1.19045 1.00379 0.99974 0.89428 1.70488 1.11133 1.08072 1.32028 1.25391 0.99044 0.99030 0.79799 1.43268 1.33762 1.30206 1.12337 0.72428 1.18594 0.94273 0.92403 0.96002 1.21867 0.94880 0.96039 1.02160 1.22834 0.95720 0.95945 1.01021 1.21840 0.97863 0.94498 1.01088 1.20857 0.91598 0.87410 0.95296 0.96001 0.93614 0.91668 0.94660 0.91498 0.91644 0.75869 0.84469 0.84549 0.85011 0.76746 0.91340 0.91122 0.91908 0.92238 0.91674 0.91669 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -25.72 10.55 55.49 0.59 -25.13 16 2 C 0.00 -0.04 5.49 -17.43 -0.10 -0.14 16 3 Si 0.91 21.02 29.55 -169.99 -5.02 16.00 16 4 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 5 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 6 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 7 C -0.23 -6.01 10.29 -15.06 -0.15 -6.16 16 8 H 0.08 1.96 7.83 -52.49 -0.41 1.55 16 9 N -0.58 -13.62 3.12 -162.64 -0.51 -14.13 16 10 C 0.18 4.16 5.33 -0.76 0.00 4.15 16 11 C -0.14 -2.68 6.19 -25.44 -0.16 -2.84 16 12 C 0.13 2.29 0.40 -130.68 -0.05 2.24 16 13 N -0.68 -11.61 4.34 -47.58 -0.21 -11.82 16 14 C 0.56 9.58 7.09 -12.47 -0.09 9.49 16 15 O -0.56 -10.25 13.44 5.29 0.07 -10.18 16 16 C -0.12 -1.94 5.88 -104.94 -0.62 -2.55 16 17 C -0.06 -0.78 9.53 -39.11 -0.37 -1.16 16 18 C -0.14 -1.62 9.99 -39.69 -0.40 -2.01 16 19 C -0.04 -0.51 10.09 -39.17 -0.40 -0.91 16 20 C 0.03 0.43 7.22 -84.71 -0.61 -0.18 16 21 N -0.50 -6.88 11.28 -12.05 -0.14 -7.01 16 22 C 0.25 2.74 12.97 -89.73 -1.16 1.58 16 23 N -0.58 -7.32 6.00 -11.57 -0.07 -7.39 16 24 H 0.43 5.06 7.72 -40.82 -0.32 4.75 16 25 C 0.10 1.52 6.88 -83.77 -0.58 0.94 16 26 C -0.11 -1.69 6.04 -26.15 -0.16 -1.85 16 27 C -0.12 -1.59 6.94 -23.50 -0.16 -1.75 16 28 C -0.11 -1.82 6.46 -26.20 -0.17 -1.99 16 29 C 0.16 3.05 2.64 -68.69 -0.18 2.86 16 30 H 0.02 0.45 7.94 -51.93 -0.41 0.04 16 31 H 0.25 7.00 8.31 -40.82 -0.34 6.66 16 32 H 0.07 1.71 7.05 -51.93 -0.37 1.34 16 33 H 0.04 0.91 7.98 -51.93 -0.41 0.49 16 34 H 0.07 1.34 7.17 -51.93 -0.37 0.97 16 35 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 36 H 0.40 6.92 5.83 -40.82 -0.24 6.69 16 37 H 0.14 1.77 6.39 -52.49 -0.34 1.43 16 38 H 0.14 1.24 8.06 -52.49 -0.42 0.82 16 39 H 0.13 1.36 8.06 -52.49 -0.42 0.93 16 40 H 0.22 1.18 8.06 -52.49 -0.42 0.76 16 41 H 0.07 1.09 6.86 -51.93 -0.36 0.74 16 42 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 43 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16 44 H 0.06 0.75 8.14 -51.92 -0.42 0.32 16 45 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 46 H 0.06 1.03 7.38 -51.93 -0.38 0.65 16 LS Contribution 364.39 15.07 5.49 5.49 Total: -1.00 -31.44 364.39 -11.27 -42.71 By element: Atomic # 1 Polarization: 17.85 SS G_CDS: -6.12 Total: 11.73 kcal Atomic # 6 Polarization: 5.09 SS G_CDS: -5.36 Total: -0.27 kcal Atomic # 7 Polarization: -65.15 SS G_CDS: -0.33 Total: -65.48 kcal Atomic # 8 Polarization: -10.25 SS G_CDS: 0.07 Total: -10.18 kcal Atomic # 14 Polarization: 21.02 SS G_CDS: -5.02 Total: 16.00 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -31.44 -11.27 -42.71 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000992376104.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 120.842 kcal (2) G-P(sol) polarization free energy of solvation -31.440 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 89.402 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.275 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.714 kcal (6) G-S(sol) free energy of system = (1) + (5) 78.127 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds