Wall clock time and date at job start Sat Apr 11 2020 06:03:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31613 * 1 3 3 Si 1.86801 * 119.99923 * 2 1 4 4 H 1.48506 * 109.47117 * 240.00190 * 3 2 1 5 5 H 1.48503 * 109.46949 * 359.97438 * 3 2 1 6 6 H 1.48503 * 109.47198 * 120.00037 * 3 2 1 7 7 C 1.38807 * 120.00173 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00051 * 180.02562 * 7 2 1 9 9 N 1.36937 * 120.00175 * 359.97438 * 7 2 1 10 10 C 1.47370 * 125.57543 * 0.02562 * 9 7 2 11 11 C 1.54869 * 104.81613 * 155.30765 * 10 9 7 12 12 C 1.54915 * 101.76904 * 37.07490 * 11 10 9 13 13 N 1.46495 * 112.33111 * 86.21551 * 12 11 10 14 14 C 1.34779 * 119.99907 * 61.01460 * 13 12 11 15 15 O 1.21590 * 120.00042 * 359.97438 * 14 13 12 16 16 C 1.47582 * 119.99648 * 179.97438 * 14 13 12 17 17 C 1.41752 * 120.01354 * 0.02562 * 16 14 13 18 18 C 1.35634 * 119.53702 * 179.97438 * 17 16 14 19 19 C 1.41171 * 119.50719 * 359.97438 * 18 17 16 20 20 N 1.32415 * 132.11347 * 179.97438 * 19 18 17 21 21 C 1.33592 * 109.22438 * 180.02562 * 20 19 18 22 22 C 1.35004 * 108.66027 * 359.97438 * 21 20 19 23 23 N 1.37008 * 107.14224 * 0.26574 * 22 21 20 24 24 C 1.35917 * 132.41915 * 180.45490 * 23 22 21 25 25 C 1.53585 * 109.09145 * 211.33068 * 12 11 10 26 26 C 1.55468 * 106.05489 * 112.99870 * 25 12 11 27 27 C 1.54760 * 104.36376 * 335.35622 * 26 25 12 28 28 C 1.46973 * 125.58195 * 180.02562 * 9 7 2 29 29 H 1.09004 * 111.81730 * 59.06843 * 28 9 7 30 30 H 0.97002 * 120.00512 * 0.02562 * 1 2 3 31 31 H 1.08996 * 110.37072 * 36.47355 * 10 9 7 32 32 H 1.09004 * 110.46615 * 274.18843 * 10 9 7 33 33 H 1.09003 * 110.96934 * 278.95547 * 11 10 9 34 34 H 1.08998 * 111.00435 * 155.21296 * 11 10 9 35 35 H 0.97001 * 120.00299 * 241.01567 * 13 12 11 36 36 H 1.07993 * 120.23299 * 0.02562 * 17 16 14 37 37 H 1.07998 * 120.24009 * 179.97438 * 18 17 16 38 38 H 1.08004 * 125.67314 * 180.02562 * 21 20 19 39 39 H 1.08002 * 126.42676 * 179.97438 * 22 21 20 40 40 H 1.07995 * 119.75417 * 359.32427 * 24 23 22 41 41 H 1.09002 * 110.01207 * 232.96956 * 25 12 11 42 42 H 1.08994 * 110.02032 * 354.36183 * 25 12 11 43 43 H 1.08994 * 110.50312 * 216.56443 * 26 25 12 44 44 H 1.09003 * 110.28079 * 94.03979 * 26 25 12 45 45 H 1.09000 * 110.67135 * 279.24676 * 27 26 25 46 46 H 1.08997 * 110.66950 * 156.11322 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.1039 1.6965 -1.2126 5 1 1.2851 2.7465 -0.0006 6 1 3.1039 1.6965 1.2125 7 6 2.0102 -1.2021 -0.0005 8 1 3.0902 -1.2021 -0.0001 9 7 1.3256 -2.3880 -0.0005 10 6 -0.1411 -2.5313 -0.0005 11 6 -0.4030 -3.9237 -0.6260 12 6 0.7722 -4.7539 -0.0522 13 7 0.4652 -5.3168 1.2650 14 6 -0.5635 -6.1758 1.4076 15 8 -1.2370 -6.4833 0.4431 16 6 -0.8724 -6.7432 2.7345 17 6 -0.0878 -6.3845 3.8593 18 6 -0.3806 -6.9113 5.0743 19 6 -1.4630 -7.8088 5.2005 20 7 -1.9609 -8.4587 6.2412 21 6 -3.0009 -9.1963 5.8426 22 6 -3.1754 -9.0159 4.5161 23 7 -2.2052 -8.1445 4.0961 24 6 -1.9156 -7.6117 2.8797 25 6 1.1668 -5.8354 -1.0689 26 6 2.5899 -5.4576 -1.5680 27 6 2.6843 -3.9300 -1.3383 28 6 1.9332 -3.7263 -0.0005 29 1 2.5744 -3.8801 0.8675 30 1 -0.4851 0.8400 -0.0004 31 1 -0.5986 -1.7504 -0.6079 32 1 -0.5277 -2.4941 1.0180 33 1 -0.3538 -3.8781 -1.7139 34 1 -1.3615 -4.3255 -0.2975 35 1 1.0022 -5.0712 2.0346 36 1 0.7369 -5.6959 3.7496 37 1 0.2100 -6.6462 5.9388 38 1 -3.6028 -9.8309 6.4763 39 1 -3.9341 -9.4762 3.9006 40 1 -2.5115 -7.8821 2.0205 41 1 1.1703 -6.8144 -0.5897 42 1 0.4696 -5.8321 -1.9066 43 1 2.6977 -5.6916 -2.6270 44 1 3.3466 -5.9791 -0.9819 45 1 2.1888 -3.3884 -2.1441 46 1 3.7247 -3.6183 -1.2469 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000992408443.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:03:44 Heat of formation + Delta-G solvation = 91.646621 kcal Electronic energy + Delta-G solvation = -29736.946403 eV Core-core repulsion = 25821.726816 eV Total energy + Delta-G solvation = -3915.219587 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -43.07456 -40.40820 -38.57373 -36.95252 -34.40388 -34.08776 -33.37954 -31.54807 -30.80945 -29.63099 -29.02062 -26.75856 -26.27185 -24.36774 -23.85984 -23.37760 -22.03553 -21.44030 -20.04963 -19.88461 -18.99826 -18.24676 -17.37706 -17.02841 -16.70474 -16.20742 -15.67581 -15.32562 -15.01549 -14.82370 -14.72914 -14.30567 -14.04445 -13.96344 -13.56507 -13.30611 -13.20810 -12.87157 -12.24656 -12.09310 -11.99946 -11.81858 -11.72707 -11.33669 -11.21098 -11.02451 -10.86892 -10.72596 -10.58954 -10.41975 -10.27399 -10.15984 -10.01949 -9.86926 -9.69989 -9.51629 -9.16245 -8.69833 -8.65301 -8.16464 -6.90027 -5.68101 -3.11731 0.31588 0.81074 2.18174 2.36030 2.95119 3.23558 3.37312 3.42014 3.43333 3.48290 3.92556 4.25490 4.37707 4.43936 4.55695 4.62647 4.83019 5.02277 5.08575 5.12974 5.17190 5.26925 5.48021 5.55064 5.59939 5.65537 5.74871 5.77639 5.80367 5.93443 6.00338 6.08168 6.10634 6.17111 6.30385 6.30973 6.36274 6.47477 6.54487 6.68178 6.72163 6.73358 6.91825 7.04534 7.49696 7.55527 7.59978 7.63060 7.83946 8.26812 8.33010 9.17583 9.78622 10.42178 11.34313 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.015273 B = 0.002946 C = 0.002682 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1832.817307 B = 9502.577998 C =10437.354602 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C -0.009 4.009 3 Si 0.913 3.087 4 H -0.285 1.285 5 H -0.291 1.291 6 H -0.286 1.286 7 C -0.222 4.222 8 H 0.077 0.923 9 N -0.595 5.595 10 C 0.152 3.848 11 C -0.142 4.142 12 C 0.159 3.841 13 N -0.693 5.693 14 C 0.569 3.431 15 O -0.534 6.534 16 C -0.153 4.153 17 C -0.077 4.077 18 C -0.083 4.083 19 C 0.232 3.768 20 N -0.494 5.494 21 C 0.032 3.968 22 C -0.097 4.097 23 N -0.367 5.367 24 C 0.129 3.871 25 C -0.111 4.111 26 C -0.124 4.124 27 C -0.128 4.128 28 C 0.162 3.838 29 H 0.047 0.953 30 H 0.253 0.747 31 H 0.108 0.892 32 H 0.009 0.991 33 H 0.069 0.931 34 H 0.068 0.932 35 H 0.400 0.600 36 H 0.148 0.852 37 H 0.157 0.843 38 H 0.183 0.817 39 H 0.185 0.815 40 H 0.179 0.821 41 H 0.059 0.941 42 H 0.071 0.929 43 H 0.059 0.941 44 H 0.058 0.942 45 H 0.075 0.925 46 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.857 -17.321 5.510 18.271 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.568 5.568 2 C -0.205 4.205 3 Si 0.744 3.256 4 H -0.212 1.212 5 H -0.216 1.216 6 H -0.213 1.213 7 C -0.350 4.350 8 H 0.095 0.905 9 N -0.319 5.319 10 C 0.027 3.973 11 C -0.182 4.182 12 C 0.074 3.926 13 N -0.343 5.343 14 C 0.355 3.645 15 O -0.413 6.413 16 C -0.160 4.160 17 C -0.101 4.101 18 C -0.103 4.103 19 C -0.012 4.012 20 N -0.214 5.214 21 C -0.118 4.118 22 C -0.226 4.226 23 N -0.039 5.039 24 C 0.003 3.997 25 C -0.150 4.150 26 C -0.163 4.163 27 C -0.168 4.168 28 C 0.054 3.946 29 H 0.064 0.936 30 H 0.063 0.937 31 H 0.126 0.874 32 H 0.027 0.973 33 H 0.087 0.913 34 H 0.087 0.913 35 H 0.235 0.765 36 H 0.165 0.835 37 H 0.175 0.825 38 H 0.200 0.800 39 H 0.203 0.797 40 H 0.196 0.804 41 H 0.078 0.922 42 H 0.089 0.911 43 H 0.078 0.922 44 H 0.077 0.923 45 H 0.094 0.906 46 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -2.167 -17.276 5.626 18.298 hybrid contribution 0.280 0.873 -0.296 0.964 sum -1.887 -16.403 5.330 17.350 Atomic orbital electron populations 1.69784 1.04883 1.24893 1.57258 1.24778 0.95666 0.97686 1.02333 0.86182 0.78412 0.83175 0.77868 1.21163 1.21639 1.21258 1.18975 0.90407 0.82270 1.43389 0.90542 1.44515 1.01767 0.99139 1.86527 1.21975 0.84372 0.92972 0.97962 1.23350 0.96718 0.97979 1.00115 1.21739 0.97204 0.92499 0.81205 1.45767 1.31859 1.44907 1.11720 1.17567 0.80810 0.79270 0.86869 1.90787 1.49833 1.60752 1.39888 1.19505 0.98633 1.02075 0.95745 1.21148 0.99210 0.98788 0.90944 1.20174 0.95109 0.95920 0.99112 1.21174 0.96771 1.01034 0.82226 1.70753 1.12048 1.12093 1.26466 1.22560 0.96468 1.00172 0.92578 1.22789 0.99009 1.02980 0.97836 1.42840 1.22762 1.30028 1.08254 1.21694 0.97004 0.93714 0.87239 1.22502 0.96840 0.97420 0.98248 1.22575 0.96197 0.97282 1.00209 1.22918 1.00439 0.93909 0.99569 1.21787 0.91510 0.85852 0.95446 0.93567 0.93668 0.87430 0.97305 0.91268 0.91324 0.76468 0.83457 0.82522 0.80024 0.79745 0.80383 0.92179 0.91075 0.92196 0.92331 0.90634 0.92235 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.05 10.07 55.49 0.56 -25.49 16 2 C -0.01 -0.24 5.49 -17.43 -0.10 -0.34 16 3 Si 0.91 21.41 29.55 -169.99 -5.02 16.39 16 4 H -0.29 -6.60 7.11 56.52 0.40 -6.20 16 5 H -0.29 -6.94 7.11 56.52 0.40 -6.53 16 6 H -0.29 -6.62 7.11 56.52 0.40 -6.22 16 7 C -0.22 -5.80 10.01 -15.06 -0.15 -5.95 16 8 H 0.08 1.93 7.83 -52.48 -0.41 1.52 16 9 N -0.60 -14.04 3.03 -161.14 -0.49 -14.53 16 10 C 0.15 3.57 5.90 -2.58 -0.02 3.56 16 11 C -0.14 -2.78 5.71 -24.74 -0.14 -2.92 16 12 C 0.16 2.67 0.74 -129.38 -0.10 2.58 16 13 N -0.69 -10.03 5.18 -46.36 -0.24 -10.27 16 14 C 0.57 8.18 6.95 -12.45 -0.09 8.09 16 15 O -0.53 -9.00 14.08 5.29 0.07 -8.93 16 16 C -0.15 -1.82 5.84 -105.37 -0.61 -2.44 16 17 C -0.08 -0.78 9.53 -39.17 -0.37 -1.15 16 18 C -0.08 -0.87 10.09 -39.40 -0.40 -1.26 16 19 C 0.23 2.87 7.81 -155.93 -1.22 1.65 16 20 N -0.49 -6.39 11.31 -12.72 -0.14 -6.53 16 21 C 0.03 0.32 11.82 -17.94 -0.21 0.11 16 22 C -0.10 -0.90 11.75 -16.39 -0.19 -1.09 16 23 N -0.37 -4.15 2.93 -62.31 -0.18 -4.33 16 24 C 0.13 1.44 10.49 -16.36 -0.17 1.27 16 25 C -0.11 -1.68 5.41 -25.12 -0.14 -1.81 16 26 C -0.12 -1.74 6.87 -24.49 -0.17 -1.91 16 27 C -0.13 -2.19 6.22 -24.87 -0.15 -2.35 16 28 C 0.16 3.04 3.67 -65.61 -0.24 2.80 16 29 H 0.05 0.84 7.96 -51.93 -0.41 0.43 16 30 H 0.25 7.02 8.31 -40.82 -0.34 6.68 16 31 H 0.11 2.90 5.83 -51.93 -0.30 2.60 16 32 H 0.01 0.23 8.14 -51.93 -0.42 -0.20 16 33 H 0.07 1.35 7.63 -51.93 -0.40 0.96 16 34 H 0.07 1.36 6.53 -51.93 -0.34 1.02 16 35 H 0.40 5.01 6.52 -40.82 -0.27 4.74 16 36 H 0.15 1.19 6.44 -52.49 -0.34 0.86 16 37 H 0.16 1.29 8.06 -52.49 -0.42 0.87 16 38 H 0.18 1.17 8.06 -52.48 -0.42 0.74 16 39 H 0.19 1.06 8.06 -52.49 -0.42 0.64 16 40 H 0.18 1.77 7.56 -52.49 -0.40 1.37 16 41 H 0.06 0.88 7.58 -51.93 -0.39 0.48 16 42 H 0.07 1.12 7.37 -51.93 -0.38 0.73 16 43 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16 44 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 45 H 0.07 1.45 8.09 -51.93 -0.42 1.03 16 46 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 LS Contribution 366.15 15.07 5.52 5.52 Total: -1.00 -32.05 366.15 -10.55 -42.59 By element: Atomic # 1 Polarization: 12.88 SS G_CDS: -6.15 Total: 6.73 kcal Atomic # 6 Polarization: 3.31 SS G_CDS: -4.46 Total: -1.15 kcal Atomic # 7 Polarization: -60.65 SS G_CDS: -0.50 Total: -61.15 kcal Atomic # 8 Polarization: -9.00 SS G_CDS: 0.07 Total: -8.93 kcal Atomic # 14 Polarization: 21.41 SS G_CDS: -5.02 Total: 16.39 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -32.05 -10.55 -42.59 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000992408443.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 134.237 kcal (2) G-P(sol) polarization free energy of solvation -32.046 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 102.192 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.545 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.591 kcal (6) G-S(sol) free energy of system = (1) + (5) 91.647 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds