Wall clock time and date at job start Sat Apr 11 2020 06:03:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86805 * 120.00063 * 2 1 4 4 H 1.48499 * 109.46966 * 270.00189 * 3 2 1 5 5 H 1.48501 * 109.47011 * 29.99971 * 3 2 1 6 6 H 1.48503 * 109.46843 * 150.00052 * 3 2 1 7 7 C 1.38817 * 120.00346 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00636 * 179.97438 * 7 2 1 9 9 N 1.36945 * 119.99471 * 0.02562 * 7 2 1 10 10 C 1.47374 * 125.57846 * 0.02562 * 9 7 2 11 11 C 1.56425 * 104.93259 * 155.24921 * 10 9 7 12 12 C 1.54919 * 101.06230 * 37.03625 * 11 10 9 13 13 N 1.46497 * 112.33045 * 86.50317 * 12 11 10 14 14 C 1.34777 * 120.00247 * 62.35547 * 13 12 11 15 15 O 1.21607 * 119.99825 * 359.97438 * 14 13 12 16 16 C 1.47390 * 120.00144 * 179.97438 * 14 13 12 17 17 N 1.31574 * 126.82256 * 359.97285 * 16 14 13 18 18 N 1.28387 * 111.96086 * 179.97438 * 17 16 14 19 19 H 0.97003 * 124.36624 * 180.02562 * 18 17 16 20 20 C 1.37041 * 111.26036 * 0.02562 * 18 17 16 21 21 C 1.39127 * 134.72548 * 180.02562 * 20 18 17 22 22 C 1.36682 * 119.78404 * 179.97438 * 21 20 18 23 23 C 1.38897 * 120.89488 * 0.02562 * 22 21 20 24 24 C 1.36722 * 120.52421 * 359.97438 * 23 22 21 25 25 C 1.39189 * 119.50728 * 0.27290 * 24 23 22 26 26 C 1.53586 * 109.09148 * 211.61440 * 12 11 10 27 27 C 1.54221 * 106.67161 * 113.66665 * 26 12 11 28 28 C 1.54763 * 104.15959 * 335.05550 * 27 26 12 29 29 C 1.46974 * 125.57700 * 180.02562 * 9 7 2 30 30 H 1.09000 * 112.54110 * 58.62540 * 29 9 7 31 31 H 0.96998 * 119.99705 * 359.97438 * 1 2 3 32 32 H 1.09004 * 110.36375 * 274.12378 * 10 9 7 33 33 H 1.08994 * 110.36792 * 36.45010 * 10 9 7 34 34 H 1.08995 * 111.05082 * 279.26651 * 11 10 9 35 35 H 1.08999 * 111.54968 * 155.02319 * 11 10 9 36 36 H 0.96999 * 120.00024 * 242.35062 * 13 12 11 37 37 H 1.08003 * 120.11217 * 359.95648 * 21 20 18 38 38 H 1.08002 * 119.55206 * 180.02562 * 22 21 20 39 39 H 1.08005 * 119.73814 * 179.97438 * 23 22 21 40 40 H 1.08002 * 120.24340 * 179.97438 * 24 23 22 41 41 H 1.08993 * 110.01664 * 232.96588 * 26 12 11 42 42 H 1.08994 * 110.01889 * 354.31708 * 26 12 11 43 43 H 1.08997 * 110.49755 * 93.72438 * 27 26 12 44 44 H 1.08998 * 110.49400 * 216.39014 * 27 26 12 45 45 H 1.08992 * 110.67306 * 156.24216 * 28 27 26 46 46 H 1.09001 * 110.66753 * 279.21788 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4976 2.0464 -1.4001 5 1 1.4476 2.6527 0.7000 6 1 3.5478 1.4401 0.7001 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2022 -0.0010 9 7 1.3256 -2.3881 -0.0016 10 6 -0.1412 -2.5313 -0.0028 11 6 -0.4085 -3.9363 -0.6364 12 6 0.7721 -4.7539 -0.0554 13 7 0.4642 -5.3177 1.2612 14 6 -0.5393 -6.2074 1.3954 15 8 -1.1894 -6.5418 0.4236 16 6 -0.8487 -6.7750 2.7199 17 7 -0.2362 -6.5104 3.8539 18 7 -0.7404 -7.1656 4.8362 19 1 -0.4269 -7.1064 5.7523 20 6 -1.7785 -7.9593 4.4235 21 6 -2.6456 -8.8445 5.0560 22 6 -3.6016 -9.4955 4.3277 23 6 -3.7213 -9.2868 2.9598 24 6 -2.8823 -8.4223 2.3132 25 6 -1.8983 -7.7530 3.0352 26 6 1.1825 -5.8330 -1.0683 27 6 2.5998 -5.4677 -1.5542 28 6 2.6933 -3.9387 -1.3335 29 6 1.9332 -3.7263 -0.0017 30 1 2.5825 -3.8905 0.8582 31 1 -0.4849 0.8401 0.0004 32 1 -0.5267 -2.4955 1.0162 33 1 -0.5982 -1.7499 -0.6099 34 1 -0.3543 -3.8919 -1.7241 35 1 -1.3645 -4.3467 -0.3114 36 1 0.9825 -5.0507 2.0364 37 1 -2.5634 -9.0170 6.1190 38 1 -4.2730 -10.1816 4.8227 39 1 -4.4832 -9.8115 2.4024 40 1 -2.9791 -8.2637 1.2493 41 1 1.1935 -6.8111 -0.5876 42 1 0.4889 -5.8385 -1.9091 43 1 3.3524 -5.9857 -0.9598 44 1 2.7148 -5.7083 -2.6111 45 1 3.7332 -3.6268 -1.2369 46 1 2.2060 -3.4020 -2.1475 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000992499266.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:03:54 Heat of formation + Delta-G solvation = 83.404922 kcal Electronic energy + Delta-G solvation = -29798.893057 eV Core-core repulsion = 25883.316084 eV Total energy + Delta-G solvation = -3915.576974 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -42.59208 -40.00490 -37.94739 -37.87392 -34.21069 -33.43065 -32.60652 -31.35903 -30.38138 -30.17273 -29.43955 -26.69067 -26.12814 -24.09388 -23.80005 -23.28110 -22.49413 -20.90787 -19.95379 -19.39023 -18.76553 -18.29602 -17.46870 -16.97473 -16.55173 -15.91301 -15.57311 -15.44199 -14.91454 -14.46438 -14.40214 -14.24164 -13.95176 -13.83740 -13.46194 -13.06855 -12.72797 -12.39099 -12.22747 -12.14987 -11.78816 -11.64781 -11.41047 -11.16503 -11.04279 -10.94131 -10.82656 -10.63471 -10.48874 -10.30136 -10.14791 -10.05984 -9.92953 -9.74864 -9.60311 -9.42329 -8.97432 -8.62625 -8.54457 -8.24149 -6.82112 -5.61501 -3.04678 0.67658 1.17614 1.84597 2.52277 3.31926 3.37137 3.41254 3.46213 3.48104 3.70022 4.24237 4.32998 4.49745 4.63529 4.77497 4.91571 5.03285 5.20249 5.20631 5.34344 5.38088 5.49449 5.54993 5.68950 5.77141 5.86883 5.91188 6.01356 6.03504 6.13540 6.18941 6.24065 6.30951 6.32792 6.40603 6.45515 6.58976 6.60080 6.63323 6.79894 6.82141 6.84272 7.03170 7.15969 7.57844 7.60196 7.67847 7.88985 7.93590 8.40085 8.48255 9.24643 9.85527 10.49980 11.40937 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.016209 B = 0.002989 C = 0.002773 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1726.972225 B = 9365.056506 C =10095.787124 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C -0.011 4.011 3 Si 0.913 3.087 4 H -0.289 1.289 5 H -0.291 1.291 6 H -0.282 1.282 7 C -0.219 4.219 8 H 0.077 0.923 9 N -0.594 5.594 10 C 0.154 3.846 11 C -0.144 4.144 12 C 0.160 3.840 13 N -0.689 5.689 14 C 0.604 3.396 15 O -0.527 6.527 16 C 0.013 3.987 17 N -0.206 5.206 18 N -0.417 5.417 19 H 0.446 0.554 20 C 0.063 3.937 21 C -0.123 4.123 22 C -0.084 4.084 23 C -0.144 4.144 24 C -0.039 4.039 25 C -0.109 4.109 26 C -0.112 4.112 27 C -0.124 4.124 28 C -0.130 4.130 29 C 0.163 3.837 30 H 0.046 0.954 31 H 0.251 0.749 32 H 0.010 0.990 33 H 0.108 0.892 34 H 0.069 0.931 35 H 0.069 0.931 36 H 0.405 0.595 37 H 0.127 0.873 38 H 0.130 0.870 39 H 0.129 0.871 40 H 0.140 0.860 41 H 0.059 0.941 42 H 0.071 0.929 43 H 0.058 0.942 44 H 0.059 0.941 45 H 0.058 0.942 46 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.671 -19.606 8.293 21.602 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.568 5.568 2 C -0.206 4.206 3 Si 0.744 3.256 4 H -0.216 1.216 5 H -0.218 1.218 6 H -0.208 1.208 7 C -0.347 4.347 8 H 0.095 0.905 9 N -0.318 5.318 10 C 0.029 3.971 11 C -0.183 4.183 12 C 0.075 3.925 13 N -0.338 5.338 14 C 0.387 3.613 15 O -0.401 6.401 16 C -0.159 4.159 17 N -0.035 5.035 18 N -0.136 5.136 19 H 0.291 0.709 20 C -0.050 4.050 21 C -0.144 4.144 22 C -0.105 4.105 23 C -0.164 4.164 24 C -0.059 4.059 25 C -0.117 4.117 26 C -0.151 4.151 27 C -0.162 4.162 28 C -0.170 4.170 29 C 0.055 3.945 30 H 0.063 0.937 31 H 0.062 0.938 32 H 0.028 0.972 33 H 0.126 0.874 34 H 0.088 0.912 35 H 0.087 0.913 36 H 0.240 0.760 37 H 0.145 0.855 38 H 0.148 0.852 39 H 0.147 0.853 40 H 0.158 0.842 41 H 0.077 0.923 42 H 0.090 0.910 43 H 0.076 0.924 44 H 0.078 0.922 45 H 0.076 0.924 46 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -3.312 -18.919 8.030 20.818 hybrid contribution 0.301 0.572 0.916 1.121 sum -3.011 -18.347 8.946 20.633 Atomic orbital electron populations 1.69805 1.04853 1.24668 1.57510 1.24782 0.95673 0.97649 1.02518 0.86100 0.78484 0.83521 0.77539 1.21632 1.21777 1.20816 1.19035 0.90435 0.82281 1.42983 0.90501 1.44482 1.01830 0.99141 1.86362 1.22247 0.84208 0.92768 0.97880 1.23610 0.96633 0.98102 0.99979 1.21718 0.97042 0.92443 0.81343 1.45765 1.33863 1.42723 1.11469 1.16584 0.80538 0.79145 0.85033 1.90775 1.50428 1.61002 1.37923 1.22983 0.98203 1.01863 0.92834 1.72955 1.20550 1.14337 0.95699 1.43027 1.26341 1.34267 1.09988 0.70893 1.19223 0.93644 0.97787 0.94347 1.19754 0.96461 0.98308 0.99904 1.20732 0.97051 0.98495 0.94216 1.20849 1.00693 1.00200 0.94620 1.20454 0.91605 0.93111 1.00759 1.19444 0.99171 1.00614 0.92424 1.22290 0.96710 0.97643 0.98418 1.22359 0.96368 0.97313 1.00209 1.22947 1.00344 0.93949 0.99740 1.21766 0.91530 0.85807 0.95447 0.93653 0.93780 0.97245 0.87450 0.91233 0.91259 0.75989 0.85533 0.85230 0.85278 0.84201 0.92257 0.90999 0.92370 0.92205 0.92366 0.90707 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.80 10.07 55.49 0.56 -26.24 16 2 C -0.01 -0.30 5.49 -17.43 -0.10 -0.39 16 3 Si 0.91 21.99 29.55 -169.99 -5.02 16.97 16 4 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 5 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 6 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 7 C -0.22 -5.94 10.02 -15.05 -0.15 -6.10 16 8 H 0.08 2.02 7.83 -52.49 -0.41 1.61 16 9 N -0.59 -14.78 3.06 -160.12 -0.49 -15.27 16 10 C 0.15 3.81 5.95 -1.72 -0.01 3.80 16 11 C -0.14 -2.99 5.85 -23.88 -0.14 -3.13 16 12 C 0.16 2.97 0.73 -129.37 -0.09 2.88 16 13 N -0.69 -11.88 5.23 -46.42 -0.24 -12.12 16 14 C 0.60 10.44 6.98 -12.53 -0.09 10.35 16 15 O -0.53 -9.98 14.21 5.27 0.07 -9.91 16 16 C 0.01 0.20 7.32 -80.75 -0.59 -0.39 16 17 N -0.21 -2.82 11.80 34.46 0.41 -2.41 16 18 N -0.42 -4.38 6.85 32.34 0.22 -4.16 16 19 H 0.45 2.91 8.96 -190.49 -1.71 1.20 16 20 C 0.06 0.71 7.38 -84.21 -0.62 0.09 16 21 C -0.12 -1.04 10.03 -39.81 -0.40 -1.44 16 22 C -0.08 -0.67 9.96 -39.90 -0.40 -1.07 16 23 C -0.14 -1.34 9.98 -39.89 -0.40 -1.73 16 24 C -0.04 -0.48 9.87 -39.78 -0.39 -0.87 16 25 C -0.11 -1.51 6.34 -105.05 -0.67 -2.17 16 26 C -0.11 -1.85 5.27 -25.79 -0.14 -1.98 16 27 C -0.12 -1.88 6.84 -25.16 -0.17 -2.06 16 28 C -0.13 -2.36 6.25 -24.85 -0.16 -2.52 16 29 C 0.16 3.31 3.63 -65.59 -0.24 3.07 16 30 H 0.05 0.92 7.98 -51.93 -0.41 0.50 16 31 H 0.25 7.15 8.31 -40.82 -0.34 6.81 16 32 H 0.01 0.26 8.14 -51.93 -0.42 -0.17 16 33 H 0.11 3.00 5.83 -51.93 -0.30 2.70 16 34 H 0.07 1.42 7.63 -51.93 -0.40 1.03 16 35 H 0.07 1.46 6.64 -51.93 -0.35 1.11 16 36 H 0.40 6.65 8.23 -40.82 -0.34 6.32 16 37 H 0.13 0.70 8.06 -52.48 -0.42 0.27 16 38 H 0.13 0.64 8.06 -52.49 -0.42 0.22 16 39 H 0.13 0.88 8.06 -52.48 -0.42 0.46 16 40 H 0.14 1.76 7.65 -52.49 -0.40 1.36 16 41 H 0.06 0.97 7.49 -51.93 -0.39 0.58 16 42 H 0.07 1.21 7.37 -51.93 -0.38 0.82 16 43 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 44 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 45 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 46 H 0.07 1.50 8.11 -51.93 -0.42 1.08 16 LS Contribution 368.75 15.07 5.56 5.56 Total: -1.00 -32.21 368.75 -11.28 -43.49 By element: Atomic # 1 Polarization: 15.36 SS G_CDS: -7.60 Total: 7.76 kcal Atomic # 6 Polarization: 1.08 SS G_CDS: -4.75 Total: -3.67 kcal Atomic # 7 Polarization: -60.66 SS G_CDS: 0.45 Total: -60.20 kcal Atomic # 8 Polarization: -9.98 SS G_CDS: 0.07 Total: -9.91 kcal Atomic # 14 Polarization: 21.99 SS G_CDS: -5.02 Total: 16.97 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -32.21 -11.28 -43.49 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000992499266.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 126.898 kcal (2) G-P(sol) polarization free energy of solvation -32.209 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 94.689 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.284 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.493 kcal (6) G-S(sol) free energy of system = (1) + (5) 83.405 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds